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LotjaGi1g1v0398400.4

Overview

Field Value
Gene ID LotjaGi1g1v0398400
Transcript ID LotjaGi1g1v0398400.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Protein kinase; TAIR: AT4G32660.1 Protein kinase superfamily protein; Swiss-Prot: sp|P51568|AFC3_ARATH Serine/threonine-protein kinase AFC3; TrEMBL-Plants: tr|A0A151TT15|A0A151TT15_CAJCA Serine/threonine-protein kinase AFC3; Found in the gene: LotjaGi1g1v0398400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:88491162..88494186) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTACCTGTTGAAGCCAATCACATGGAGCGGGAACGAATTCGTAAACGACCTCGTCTCACCTGGGATGTTCCCCCTCC AGAGGTTTCTTCAATTTCTCAATTCTCGTTAGGGTTTTCAATTTTCAATTCTCAATAATCTGAAATTGCTTTGCTTTGTT AATCTTAGTCGCAGAGGGCTTTGGTGTTAGATGGTGACGAACGAATCGATAAGAAGCATGCCTCGCCTCCACGAAGGGAT GATGACCGCGATGGCCATTATGTGTATCATCTCGGCGAAAATCTCACTCCTAGATGTAACTTCTCTCCCAATTTCTTTGC TTATTTGTTGTTTTCTTTCAATTCGTTTCAAAAATCAACCAATTTAGATGCGATACCCATTGCTTTGTTTTGTCAAATTT TAATTGTAGCCTTGTGAATTGCTCTGTTTTTTGTTCTGGGTGTTTCATTTACCTAATAAGTTCATTTCTTTTAATTGTTT GTACCCTTGTTCAGTTTTTAATTAGTTCTTATATTTCAGCATTTGGTAACACATGATGTGAATCATCCTAATTTCATAGG TTTTTTTATTTTTTATTTTAATGCCATGGTGCTTAATGTGTGCTATTATCCTGATTCCTGATACCACTCATTCAGATAGT GATTTTTATGTTTTCTCATTGGAGTGGTTTTTCGTTTTGTTTTGTTTTTAACAGATAAAATTCTCAGCAAGATGGGTGAA GGTTAGGGGTCAAGTGCTATCTGAATACAAGTTTAATTTTTTTGTGAGTGTGCTTCTGTCATTCCACATGTTGCTAGTGC TGTAGGCACATTTGGTCGGGTTTTGGAATGTTGGGACCGTCAAACACGAGAGTATGTAGCTATCAAGGTAATTAGGAGCA TACGGAAATATCGCGATGCGGCAATGCTTGAGATTGATGTGCTTGAACGTCTAACAAAGAAGGATGGAGCAAGCTCACGG TACGGATTGTGTATACTGTATAGTAAAATTGCTGCTAGAATTTGGTTATCGTTTATTGCATGGGATGACTAATATTTACT CCATCACAATTGTTATTTGCAGCTGTGTGCAGATCATAAATTGGTTTGATTACCGAAATCACATATGCATTGTAAGTAGT CTATATAATATTTCTTTCGTCAATATATCTTCCTTGATTTACTGTGTTCAAGAAGTTTGTTTTGATAAAAATTGTTGCCG AATTGAAAGTGTGCTGTCTTCCTTTTTTCTGGGGGTGGGAAGGGTTACAGGTTATTTTTTAGTTGTTGTGAAAATGGATG GGATGATTGGAATCTTGAATGAATTTGGTAATTATTTTCCTGATGGTTTGTGTATGTCTTTCATGTTCTTTTGTTCTCCT TTCTTTTCAGAAAGGATAGGTGATTGATCACCATTTATTTTGCAAGTGAATTGAGTTGTTTAGTTCAGCCATAGTGAATT ACACACACACACATCTCCATGGGGGCTTTATTCATAGAATTGGGAACTAAGCAGATATATTCCTTCAATGCATTTTAATG GTGTTATCAGGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAGGAGAAATAAATACTGCCCATTCCCTGTGG ATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATGTCTGTGGATAATTCTAGACCTTCAGTTTACTTCT CATGTTTTATTCTTATATCTCTTGTGTACAATCAACCACATCATTTTCCTTGGCTGTCTTGCTTTGTCCAGGAACGCAGT ATTTCTTCGTTTTGTCTGCTTACTTAAACTTGTTTCTTGTGCTTTGTCATATTCAGATATGCATGAACTACACCTAATCC ACACAGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATGTAAAGCTCCCTAGTCGCAAGGTAGCTAGCATT TTTGAAGTAATGACATAGACTCTAATGATGTATTTAAGTAAAATGATTTGATTGGTACAGAGGCTTTCCTCAGATGAAAC ACAATTCAGGTGCTTGCCCAAATCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATGTGATAATCAGAACCATA GCTCCATTGTTTCTACAAGGCATTACAGAGCCCCGGAGATTATTTTAGGTAACTAGATATTGTTTTTGTTGGTGAGAATG TGTTGCTTTACTTGTTTGTCTATTGCTCTGTTGAGTGTAAATGTGGAACTCTGAAACCCTGTGACCCATTAAAAATTTCG TCAATACCTTACATCACATCTCTTGTTAAATCTTCCAGGATTATTTACCATCTTCTTTTGACTTTGTATGATCCTGGATT TTATGTTCAAGATATTGGTTGTTGTGACTTCTGAGCCCTTTGTAGGGTAGTAATTGCCATTTTTCTTATTCAGATTGTAT TCCCCCCTTATAATGCATGCCTTGCTAGTAATCTTCCTGTACACTTTCTTTGGTGATCTTTTGTTTGTTTTCTCATGTTA ATGTTAAGAGGCCAAAAACAAACCAGAGGTGCCAAATCTATGACATGTAATGGTGCCATTTGGGAGACTGCATTATGTGG ATTTAGTGCATGTTTGGATGCACGGTGAAAAAAAAAATCATGGTGGACAGAAGTAAAAGATAAGGGAAGTTGCTTCTATC CACCATGATTTTGGCTCACCGTGGTTTTGTACCATGTATACAAACATGCACTTAGTCTTGACTAAATGAAATTATTAGGA TTGTAATAGTTAATGCAATGCTCTCACCTGTATCTGAAATGATAATTGCAGGTCTAGGGTGGTCATACCCATGTGATTTG TGGAGTATTGGATGTATCCTCATTGAACTATGCACGGTTGGTCCTCCAGCTAACAAGATACATTAGGCATGGTCAGAATC TGGAACAGCTAGCCTTAATGTTTTAAATGTGGAACTTTTGCAGGGTGAAGCGTTGTTCCAGACTCATGAAAACTTAGAGC ATCTGGCAATGATGGAGAGAGTCCTGGGACCTCTACCAGAGCACATGGTTCGAAGATCTAAGTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0398400.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTACCTGTTGAAGCCAATCACATGGAGCGGGAACGAATTCGTAAACGACCTCGTCTCACCTGGGATGTTCCCCCTCC AGAGTCGCAGAGGGCTTTGGTGTTAGATGGTGACGAACGAATCGATAAGAAGCATGCCTCGCCTCCACGAAGGGATGATG ACCGCGATGGCCATTATGTGTATCATCTCGGCGAAAATCTCACTCCTAGATATAAAATTCTCAGCAAGATGGGTGAAGGC ACATTTGGTCGGGTTTTGGAATGTTGGGACCGTCAAACACGAGAGTATGTAGCTATCAAGGTAATTAGGAGCATACGGAA ATATCGCGATGCGGCAATGCTTGAGATTGATGTGCTTGAACGTCTAACAAAGAAGGATGGAGCAAGCTCACGCTGTGTGC AGATCATAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTA AGGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGAACGCAATAT GCATGAACTACACCTAATCCACACAGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATGTAAAGCTCCCTA GTCGCAAGAGGCTTTCCTCAGATGAAACACAATTCAGGTGCTTGCCCAAATCTAGTGCTATTAAGCTGATTGATTTTGGT AGTACTGCATGTGATAATCAGAACCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCGGAGATTATTTTAGGTCT AGGGTGGTCATACCCATGTGATTTGTGGAGTATTGGATGTATCCTCATTGAACTATGCACGGGTGAAGCGTTGTTCCAGA CTCATGAAAACTTAGAGCATCTGGCAATGATGGAGAGAGTCCTGGGACCTCTACCAGAGCACATGGTTCGAAGATCTAAG TAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0398400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVPVEANHMERERIRKRPRLTWDVPPPESQRALVLDGDERIDKKHASPPRRDDDRDGHYVYHLGENLTPRYKILSKMGEG TFGRVLECWDRQTREYVAIKVIRSIRKYRDAAMLEIDVLERLTKKDGASSRCVQIINWFDYRNHICIVFEKLGPSLFDFL RRNKYCPFPVDLVREFGRQLLESERNMHELHLIHTDLKPENILLVSSEYVKLPSRKRLSSDETQFRCLPKSSAIKLIDFG STACDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSIGCILIELCTGEALFQTHENLEHLAMMERVLGPLPEHMVRRSK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45646
11 319 309 1.3E-164 –
PANTHER
PTHR45646:SF12
11 319 309 1.3E-164 –
MobiDBLite
mobidb-lite
15 57 43 - –
MobiDBLite
mobidb-lite
33 57 25 - –
CDD
cd14134
58 320 263 1.50955E-166 –
SUPERFAMILY
SSF56112
58 317 260 1.48E-66
IPR011009
Gene3D
G3DSA:3.30.200.20
62 151 90 1.4E-95 –
Pfam
PF00069
71 308 238 2.4E-41
IPR000719
SMART
SM00220
71 320 250 3.9E-46
IPR000719
ProSiteProfiles
PS50011
71 320 250 32.881
IPR000719
Gene3D
G3DSA:1.10.510.10
125 320 196 1.4E-95 –
ProSitePatterns
PS00108
192 204 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0398400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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