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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0400500 |
| Transcript ID | LotjaGi1g1v0400500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit L; TAIR: AT5G25754.1 RNA polymerase I-associated factor PAF67; Swiss-Prot: sp|A7SDW5|EIF3L_NEMVE Eukaryotic translation initiation factor 3 subunit L; TrEMBL-Plants: tr|I1JUS7|I1JUS7_SOYBN Eukaryotic translation initiation factor 3 subunit L; Found in the gene: LotjaGi1g1v0400500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88824852..88829512) extracted from Lotus japonicus Gifu genome v1.2.
TCAGTATATAAATAAAAATCTCAGCTAATCCACTTCAGCGTCCTATCGCGGAAAACCCTAATCTACCAGTATCAGTCTCG TAGAACCTCGAATCAGTGTTCCAAAGCAAACATGGCGTCTCAGGATTTCGATGAGCAGCGGCAGCCACCACAAGAAGCCG GGTACGACCCAAACTACGTCCCCGACTCCGTCAAATCCTTCGTCGTCCACCTCTACCGCCACATCCGCGAGAAGAATGTC TACGAGATCCACCAGATGTACGAAACCTCTTTCCAAACCCTATCGGAGCGTCTCTTCAAGGATACTCCATGGCCCTCCGT CGACGCCGTCGCTCACTACGTCGACAACGACCACGTCTTCTGCCTCCTCTATAGGGAGATGTGGTTCCGCCACCTCTATG CTCGTCTTACCCCCACTCTCCGCCAGAGGATTGATTCGTGGGATAACTACTGCTCGCTCTTTCAGGTTGTGCTCCACGGC GTTGTGAATATGCAGCTGCCGAATCAGTGGCTTTGGGATATGGTTGATGAGTTCGTTTACCAGTTTCAGAGCTTCTGTCA GTATCGTGCGAAGATGAAGAACAAAACTGAACAGGAAATCGCTCTCCTGAGACAGTTTGATCAGGTCAGCTACATAACAA GCTGTTAATTTTGTGAAATTGCTTACATATTCAGAATTGTGGTTGCAATTATGCTGTTATTTGTGTGAAATTGGGAACAT ATTCGGAATTGTGGTTGCTGAAAGCGATTTTGTGCATGTTTAGAAGCTTTTCTACAATTGATTTTTAGGTTTAAATCATT GCCGGTTAGAGAAGCTTATGCGAGTAGTTTCTGATTCTCGGAATTGATGATGAGCTGATTCAAACATGCTATTGAAATCC TGAACTAACTGTGTTTGTTCTGTTAATGTTTATGGTTTAGGCATGGAATGTTTATGGGGTGCTGAACTACTTGCAAGCGC TTGTGGAGAAATCTGCAATTATTCAGATTCTGGAGCAGGAGAAGGAGGGATTGGAGCAGTTTACTGCTACGGATGGATAC GATTACAATGGGGGAAGCAATGTGTTGAAGGTTTTGGGGTATTTCAGCATGGTTGGTTTGCTTAGGGTGCACTGTCTTCT GGGGGATTATCACACTGGTCTTAAGTGCCTGCTTCCTATTGATATTACTCAGCAGGGTGTTTACACCAGTGTCATTGGCA GTCACATCACTACTATTTACCACTATGGTTTTGCCAATCTTATGCTCCGCAGGTCATGACTTTTGTTGCTTTATTGCTTA AGTTGATTGTTTGTTTTATTGTTGTGTATGATGACCAATAATTTTTAGATTAATATCTTTACAATGTTAGTGATTGGTGT TGTCTTTACTTCTGAAGAAAAAAATTACCTGCTAAAATCTTAGTCGTTTGAGGGAGCTTTGCAGTGTTTGCTGGATGAAT GGTTTCCTTTTTTTGGTATAGTTTGGAAGTGTTTATGTACCCCCCCTAAAAAAAGAGTTGGTAGTGTTGATTGTGGTTGT TGGTTGTCTTATATTACCTATCATCTTGTAAAATGCAAGCATGGAATGAAATTATGAATGTTTTCTTTCTGTAGCTTTTA TGGTTTATATATATATTACTATTGAGGATTTAAAATTTATTCATGGATTAGAAAGCAGAGAACACTCAACCACTTTGGAG TATTATGTACTTGCAAGCTTCATCTTATTTAAAGACCGGACCAACATATCGTTGGTGTTATTTGTCATATATGGCGGGTT TTTGGCTCTCCACCATGGCCGATATCCCGCTATTACTTGTCATATATGACGGGTTTTTGGCTCTCCGCCATAGGCCGCCA CCCGCGATTAACAACCTTGTATATTATCCCATACTTCATTTTTGGAAGTAGTGCAATTTAAGTATACCATGTCACATATT GTTGGCTTATAATGATGCTTCATTGAAAATGGCTGTTTGAACATGTGTTATGAAGAATTTAATTCCACAGGATGTTTTTT TTTGTACATTATTTTATTATTATTGTTTTCCCTTCTCATTTATCTTTTTACATGTCCTAACCTGTAGCCTTTTCTACAGA TATGTGGAAGCAATCCGTGAATTTAACAAAATCCTCTTGTACATCTATAAGACGAAGCAGTATCATAATAAATCGCCACA ATATGAGCAGATACTGAAGAAGAATGAACAAATGTATGCCTTGCTGGCAATCTGCCTTTCACTCTGCCCCCAAAGCAGGC TTGTTGATGAAACTGTGAACTCTCAGCTCCGAGAGAAGTATGGTGAAAAGATGGGTAGAATGCAGCGTTATGATGATGAG GCTTTTGCCATGTATGATGAGCTCTTCTCATATGCATGTCCCAAGTTCATTACCCCATCAGCACCTAGCTTTGACGAACC TCTAGTAAATTACAATCAGGTATACCTTGGATTCCATCTGTGTTCCAGACTAACAGAAGCATTTTTTAGTGTGTGCGTAG CCTTCCAGAAAAACTTCAAATTTGAATTTAGCTCCAATTGACTTCAAATTTGTTTTCTCTATATTATTTTACTTTTGAAT ATTTCTCTCTGCTTCCTGGGGGGTATACATCTGATTTGAAATACCTAACCTCATTAAAGAAAGTTAATGAACTATTGAAT GTGAATTTTGGCACTTGAAGTTGAGTTCCTATGAGTTTCATTAAGAACTAATGTTTTCAGTATTTTCCCCCCACTTTTCT TCTTTTGAATGTTAATTTATTTGTTTACACTTCACACATTTCTTGCTGTTAATCTTATATTGGACCTCAATTGACACCTT GAGCCTGTATGGTTTAGGGCTTTGGTTAAATAAAAGGTTTAGAATTATCTGTCAGAGTTGCTCAACTTGTCAGAGATAAT TGTTTAGATGTTCTTTTTGCGCTCTTTTTTCCTATGTGAAATGCTAAATATTATTTGTTTTGTCAGGATGCTTATAGACT TCAATTGAAATTGTTCCTTTATGAAGCCAAGCAACAACAGTTGTTATCAGGCCTCCGTACCTTCTTGAAAGTGTACTCAA CAATCTCCCTTGCAAAACTTGCAAGTTACATGGAAGTGGATGAACCCACCTTAAGGTTGCAACTTGCCAGACATCCAATT ATTTTAGAATTTACTTTATCAATATGAAATATAAATTTGGACATAAGTTGACACGCACTTCAATTTGATGCTTGGCAGGA CTATCTTGACGACATACAAGCATAAGACACATGCTGTTGATAGTGATGGAAAAATTACATCAAATGCAGATGTGGATTTC TATATTGATGAAGTAAGCGCTATTTCCCTTTGCTTAATACTTTGCTCATCGGAGGGGTTCTTATTTCTGAATACTGCTTT GAAATGTTAACAGAATTTCTGGGCCATATTAGCGCCAGTGTAATTTTCAGTTGAATTTATAGCTTGATATTAATAGCATT TCCTTGCTAATTCTTTTCTGAATTTATGGTCGTGTCTCTTTGAGTTCAGATCAACTACGTCCGTTGTTGTTTTGTATGCT GAGAATAATGCAAATGAATAAGAATGTTATTGATGAATGGAATCCCTACTTGACTACTTTTGTGAATGCAATGAACATTG TTCAGGAATTCATATTAGTTTTCCTGGTTGAAGCTGAAAATTATGTTTCACGTTTTTGATGAATGGAATCCCTACTTGAC TACTTTTGCTAATGCAATAAACATCGTTCAGGAATTCATTTTAGTTTTCTTGTTGTGAAGCTGAAAATTATGTTTCCTGA ATTGAACTGTATGCCAGTTTCTGATGGTGCTCCAATATTTACTTAATTGACTTTTTCATTTGCTGCAGGACTTGATTCAT GTTGTGCAGTCTAAACCTGCCAAACGTTATGGTGATTACTTCTTGCGGCAGATCGTCAAGGTAGGATTGCGTCTGCAGTG TGATGTATATTTTTCAGGTCTGCCAAGTATTGTTATTTCTTATATGACCAATTCGTTCTGTCTTGTATGCAGCTTGAAGG GGTGATCAACGAGATGGACGCTATAAAGCTGGAGTGAGTTGTTGCCCATTAGCTCCTAAATTGACTTCATAATTTATCCT TTTTGGTTCCCTGTTTTACTTTGATTATCAGGCTGAATTTTTCCTGAGGAGTCAGTATGTTGTTTGGAGGTGGAGGATGT AGTTAGCATTCTAAATGTAATTTTAACTTTTCTTAACTTAAGTTGTTTTATCTTAAGAAATAACCCATCCATTTATTGTT CCAAAAAAGAGGCTTAAGAAAGTTTCATTATTCTGGTGATTTACTCGTTCATATTCACGATAATAGGTGAACACTTTGTT GTGTTCAGCTACTAAGTTTTAATTGACCAGTAGCAAGATTTAGTAGCAAGATTGCGTCTTTTGTTTCGTAACCCGACATA TTATGATACTATAGCTCAAGGTGTACTTTAAAGTTTGAGCTCGAGATGATTGCTTAATCAAGTTGATTAAGGGCCCGTTT GGTGGTCAGGATATGATATGTAAGCAGATAGCAACAAGATATGATAAGAGCAGGATAGACTCTTATCCTATCCTGTGTTT GAGTTGTCCATGATAAGAACAGGATATGATAAGGAAAAATGTTATATTTGAATAAAAATATATATTTAAAAATTTAAATT TTTTACATTTTAATGAATGAG
CDS sequence (LotjaGi1g1v0400500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCTCAGGATTTCGATGAGCAGCGGCAGCCACCACAAGAAGCCGGGTACGACCCAAACTACGTCCCCGACTCCGT CAAATCCTTCGTCGTCCACCTCTACCGCCACATCCGCGAGAAGAATGTCTACGAGATCCACCAGATGTACGAAACCTCTT TCCAAACCCTATCGGAGCGTCTCTTCAAGGATACTCCATGGCCCTCCGTCGACGCCGTCGCTCACTACGTCGACAACGAC CACGTCTTCTGCCTCCTCTATAGGGAGATGTGGTTCCGCCACCTCTATGCTCGTCTTACCCCCACTCTCCGCCAGAGGAT TGATTCGTGGGATAACTACTGCTCGCTCTTTCAGGTTGTGCTCCACGGCGTTGTGAATATGCAGCTGCCGAATCAGTGGC TTTGGGATATGGTTGATGAGTTCGTTTACCAGTTTCAGAGCTTCTGTCAGTATCGTGCGAAGATGAAGAACAAAACTGAA CAGGAAATCGCTCTCCTGAGACAGTTTGATCAGGCATGGAATGTTTATGGGGTGCTGAACTACTTGCAAGCGCTTGTGGA GAAATCTGCAATTATTCAGATTCTGGAGCAGGAGAAGGAGGGATTGGAGCAGTTTACTGCTACGGATGGATACGATTACA ATGGGGGAAGCAATGTGTTGAAGGTTTTGGGGTATTTCAGCATGGTTGGTTTGCTTAGGGTGCACTGTCTTCTGGGGGAT TATCACACTGGTCTTAAGTGCCTGCTTCCTATTGATATTACTCAGCAGGGTGTTTACACCAGTGTCATTGGCAGTCACAT CACTACTATTTACCACTATGGTTTTGCCAATCTTATGCTCCGCAGATATGTGGAAGCAATCCGTGAATTTAACAAAATCC TCTTGTACATCTATAAGACGAAGCAGTATCATAATAAATCGCCACAATATGAGCAGATACTGAAGAAGAATGAACAAATG TATGCCTTGCTGGCAATCTGCCTTTCACTCTGCCCCCAAAGCAGGCTTGTTGATGAAACTGTGAACTCTCAGCTCCGAGA GAAGTATGGTGAAAAGATGGGTAGAATGCAGCGTTATGATGATGAGGCTTTTGCCATGTATGATGAGCTCTTCTCATATG CATGTCCCAAGTTCATTACCCCATCAGCACCTAGCTTTGACGAACCTCTAGTAAATTACAATCAGGATGCTTATAGACTT CAATTGAAATTGTTCCTTTATGAAGCCAAGCAACAACAGTTGTTATCAGGCCTCCGTACCTTCTTGAAAGTGTACTCAAC AATCTCCCTTGCAAAACTTGCAAGTTACATGGAAGTGGATGAACCCACCTTAAGGACTATCTTGACGACATACAAGCATA AGACACATGCTGTTGATAGTGATGGAAAAATTACATCAAATGCAGATGTGGATTTCTATATTGATGAAGACTTGATTCAT GTTGTGCAGTCTAAACCTGCCAAACGTTATGGTGATTACTTCTTGCGGCAGATCGTCAAGCTTGAAGGGGTGATCAACGA GATGGACGCTATAAAGCTGGAGTGA
Protein sequence (LotjaGi1g1v0400500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASQDFDEQRQPPQEAGYDPNYVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQTLSERLFKDTPWPSVDAVAHYVDND HVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTE QEIALLRQFDQAWNVYGVLNYLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGD YHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIYKTKQYHNKSPQYEQILKKNEQM YALLAICLSLCPQSRLVDETVNSQLREKYGEKMGRMQRYDDEAFAMYDELFSYACPKFITPSAPSFDEPLVNYNQDAYRL QLKLFLYEAKQQQLLSGLRTFLKVYSTISLAKLASYMEVDEPTLRTILTTYKHKTHAVDSDGKITSNADVDFYIDEDLIH VVQSKPAKRYGDYFLRQIVKLEGVINEMDAIKLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| Hamap | 1 | 503 | 503 | 29.366 | ||
| PANTHER | 8 | 512 | 505 | 2.8E-237 | ||
| Pfam | 105 | 500 | 396 | 1.8E-149 | ||
| ProSiteProfiles | 289 | 488 | 200 | 16.962 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. |
Expression pattern of LotjaGi1g1v0400500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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