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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0400800 |
| Transcript ID | LotjaGi1g1v0400800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0400800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88876735..88880544) extracted from Lotus japonicus Gifu genome v1.2.
TAGGCTTAAATACTCTGGAGGTCCCTGAAATTGTATGACATACAAAAATAAGTCCCTGAAATTTTTTTTCCCGATTCTGA ATCCCTAGAATTTGTTTTTTAATCGAAATAGGTCCCTAGCCGTGTTACCAGCTTATATGACTATATTTTTACACAGTCAC TCATTCCACGTGGCATTTTTATTTTTCTTTTATTACACATGTTATAATCAATTATAATTAAAATAAATAAATTATAATTA AACATTTTAATCTTAAAATTAATCCCTAAACCTAATAATTCTTAATCCCTAAATCAGAAGGGTTCATTCTCCTTCTTCCA TTCCTTCAACCACCATCCCCAAATCTCTGAATTCGCATCCTCCCTGTAAACACCCAGCAATTTCTGTCATATCCAGCGAT CCAGCATCAAGCTTGTTTCACGTTCCAGAATTTGAACAACAATGTCCTCCAAAAATCTACTTGTACACAAAATAATCACA ACAAATTCTCAAAATCAAGGGAAAAAAATTCATTATTCCCTTATTTCACGTTCTGATTTTTGAAAATAGAAGTAACTGGA ATACAAGAGCAAGAGTATAGAATCGAGGGGTGAGGATGAAGGAAAGGAGCAAGCATAATCAATGGATCTTCATCAACCAA TAGATCTTCATCAACCAAATCGATACCCAATTTTTGAAGCCCACTCCACCTCCAAGCAGATCTGAGACTGGAAGTGGAGG AGGGAGAGGGAGGGTGTCATGGCGCTGGATCTCTCGCCAGAGCTTCTCCAATCCATCAAGCCAGGGGACATGATTGGAGT CGACGCCAGCGGCGGCGCCGTTAGCCTCCTCCTTCGACCTGTGGTTTTCTCCCTCTATCTCGCACCTCGCTCCTTCCTCT GTTGTCATCTCTCTCTCTCGCTCTCTTCCTCCCTTCCCCTCTCACGATTTCTCTCTCCCCTTCTCCCCCACCATTGTTGG CATCAGCGCGCGAGAGAGAAGAGTGATGAAGAAGGGTGAAAAACTGAAGAAGGTTGGGGTTTGTGTCTTTGTGAGGATGA TGATGAAACGATGATAAAGGGCGATGAAGAAGTTTGTGAGCGTGAATGGGTGATGAAGAAACAGTGATGGAGGGGAGTTG GGTTTGACACCCCACCTATGGGGCTTGGCACCCCACTTTATCAAATACGGAATTTAAAATTCCGTATTCTCCCTATTGAA TACGGAACTTAAAATTCCGTACTGTATTTAAGCATGCGTGTCACATTTTCAACCACTCATTATATACTAAAATAGATACG GAATTTTATTTTCCGTATTGATACGGAACTTTAAATTCCGTATTTAATAAAGTGGGGTGCAAAGCCTAAGGGGTGGGGCA CCAAACTCAATTCCCGTAATGGAGATTGATTTTCTAAAGATAGGGGTTGGGTTCTGATAGGTTTTGGTTTGGGAATTTAG GGATTTATGGTTACTGTGTTTTAATATACGGTTTAATTAGATTTAGGTTAATTAGGTAAATAGGGTTTTATATTTACATT TAATTGCTTTTTTTTAATTCCATGTGTATTTAAAATAAATGAAAAAGTCACGTGTAAATATTGAGTCGGCAAAAAATATG CCAAATAGGTTGAAAACACGAGTAGAGACTTATTATGATTAAAAAAACAATTCCAGGAATCCGGAATCGAAAAAAAAATT TTAGGGACTTATTTTCGTACGTGGCACAATTTTAGGGACCCCTAGAGTATTTAAGCCAAAAAAAAATTACAAATGTATGT GTTGTTGTTCCTCTTTCTGCAGTGCATCAAACTGTCAGGTTTATCGAAGGGCAGGGCAATATTTTAGCTGGAGAATGGCG CCAGAACGCGATCAAACCTTCAACTCGTGATTGTAAGTTTCTATCACTCACTATTCTCAAATTTTAACAACATCGATCCT GTAAAGTGTAAATCTCACACTTCTGAAGCTATAGGTTTTTTGTAGTTCAATTCATTAGAACAGCATGTTAGGGTTTTGAA AAACTAGTATCATATCAGAACAAATTCAAAACCCTAGAATAGATTCCACAAATTCATCACTCATAATTTAGATTTATGGT TGATATGAAATGCAGGACGCACTGTAAGATTCAATTCAGTGATTTAGGAATTTGCATTTCATCTAAAAGATGAAGAAAAT GAAGATGGAGGATGGGATTAGCACCTTACCCGATGCGCTCCTCTGCCACATTCTCAGTTTTCTCACAACCAAGGAAGCCG TTGCGACAAGCGTTCTCTCCAAGAGGTGGATTCCGCTGTGGCGTTCCGTCCCCACTCTGCACTTCAAAGATGCCAACTAT CATACTGATATAGGACATGCCGACCATGATATAGTAAAAGACGTTTGTTCCCGCATTGTTCAGTCCGTGTATGCAGTTAT CCTCTCCCGAGATTTCCAGCTACCCATTAAAAAATTCTACCTCAGGCTCAACGATGTCTGTCAACCCTTTTACGACCCTG CCAATGTTAGCGTGTGGGTTAATGCTGTTGTGCAACGCCAGCTTGAGCATCTCGATATCTCCCTGCCCTATCCCATGTTG TCTACTCCACGAGCCAACTTGTCTTCCATCTTCAGTTGCAGGACTCTTGTGGTTCTCAAGTTGCGGGGGGGCTTAGAGTT GAAACGTTTTCCCTCTGTTCATTTTCCCTGCCTTAAAGTCCTGCATCTGCAAGGCGCATTGCTTCTCCATGACGTTCCAT ATCTTGCTGAGCTTCTTTCCGGATGTCCGGTTCTTGAAAATTTGAAGCAAAGTCTTATATTTTATCAAGAATATGTCCCT CTCACTAACAGAGAGTTTAATACCTTACCCAAGTTGGTCAGAGCAGATATTTCAGAAACAATTTTTAGGATGAACATGTT TAACAATGTCCATTTTCTGCGAATAGATGAGGTATTGTGGATTGTCCATCATTTCAGTCATTTTTATTCTTAAAGAAAAT GGGATATTTGATTTCTTGTTATTGTAACTCATGCAGATTTGCGAAGGACTCCTTCGCGGCGGTGAATGTATGTTTTACAA TTTAACCCATATTGAACTTGTCTATGCCAATTATAATTATGATTGGTTTGAGGTAGTGAAATTTCTCAAGTATTGCCCCA AGCTTCAAGTTCTTGTCATTAACCAGGTTTGGTTAGAGGCTTAGAATGATTTCTATTTTTTGTCACTTCTTCACATGTTT TCATTTATTTATTGATTTTATGTTTATTGTTAACAGCCAGACTTTTATGACTACGACCTTGATCAACTCCACATAAGCGA TTGGCAAGACCCACCATCTGTTCCTAAATGCATTCTACTACACCTTAAAGTTTGCTATCTAAATGATTATAGAGGCACAA AAGGTGAGCTTCAATTTGCAAGATATATTATGCGGCATGGAAGGTTTTTGAAGAGGATGACAATTTCCAGTAGCACTGCC GAGAATCAACGAGGAAAGCTTAAAAATGTAAAAAAATTATTCTCATGCACGAGGCGCTCTGCAACTTGTAAATTTTCCTT TAAATGATACGAACAAACTAGATTTGGTTGCACCAAGTAGTTTCTTCATTTTTCTTCCTTTGAACTAGTATCTACCTACA AGGATATGGACATTGTCCTAATTTTCAATTGACACTAACTGTTTCATTACTGATAATTGCTTGTGAATTTGAGATAGACT GCTCAATGTGAGGTAATCCGTTATTGTATGTCTGATCTCATGCAAGCACAATCACTCACTCAAGACTCAAAACACATAGT TGTTTGTTGGAATCAAGACCTATGAGATCTGATATAGGGTTAGTTTCTTC
CDS sequence (LotjaGi1g1v0400800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAAATGAAGATGGAGGATGGGATTAGCACCTTACCCGATGCGCTCCTCTGCCACATTCTCAGTTTTCTCACAAC CAAGGAAGCCGTTGCGACAAGCGTTCTCTCCAAGAGGTGGATTCCGCTGTGGCGTTCCGTCCCCACTCTGCACTTCAAAG ATGCCAACTATCATACTGATATAGGACATGCCGACCATGATATAGTAAAAGACGTTTGTTCCCGCATTGTTCAGTCCGTG TATGCAGTTATCCTCTCCCGAGATTTCCAGCTACCCATTAAAAAATTCTACCTCAGGCTCAACGATGTCTGTCAACCCTT TTACGACCCTGCCAATGTTAGCGTGTGGGTTAATGCTGTTGTGCAACGCCAGCTTGAGCATCTCGATATCTCCCTGCCCT ATCCCATGTTGTCTACTCCACGAGCCAACTTGTCTTCCATCTTCAGTTGCAGGACTCTTGTGGTTCTCAAGTTGCGGGGG GGCTTAGAGTTGAAACGTTTTCCCTCTGTTCATTTTCCCTGCCTTAAAGTCCTGCATCTGCAAGGCGCATTGCTTCTCCA TGACGTTCCATATCTTGCTGAGCTTCTTTCCGGATGTCCGGTTCTTGAAAATTTGAAGCAAAGTCTTATATTTTATCAAG AATATGTCCCTCTCACTAACAGAGAGTTTAATACCTTACCCAAGTTGGTCAGAGCAGATATTTCAGAAACAATTTTTAGG ATGAACATGTTTAACAATGTCCATTTTCTGCGAATAGATGAGATTTGCGAAGGACTCCTTCGCGGCGGTGAATGTATGTT TTACAATTTAACCCATATTGAACTTGTCTATGCCAATTATAATTATGATTGGTTTGAGGTAGTGAAATTTCTCAAGTATT GCCCCAAGCTTCAAGTTCTTGTCATTAACCAGCCAGACTTTTATGACTACGACCTTGATCAACTCCACATAAGCGATTGG CAAGACCCACCATCTGTTCCTAAATGCATTCTACTACACCTTAAAGTTTGCTATCTAAATGATTATAGAGGCACAAAAGG TGAGCTTCAATTTGCAAGATATATTATGCGGCATGGAAGGTTTTTGAAGAGGATGACAATTTCCAGTAGCACTGCCGAGA ATCAACGAGGAAAGCTTAAAAATGTAAAAAAATTATTCTCATGCACGAGGCGCTCTGCAACTTGTAAATTTTCCTTTAAA TGA
Protein sequence (LotjaGi1g1v0400800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKMKMEDGISTLPDALLCHILSFLTTKEAVATSVLSKRWIPLWRSVPTLHFKDANYHTDIGHADHDIVKDVCSRIVQSV YAVILSRDFQLPIKKFYLRLNDVCQPFYDPANVSVWVNAVVQRQLEHLDISLPYPMLSTPRANLSSIFSCRTLVVLKLRG GLELKRFPSVHFPCLKVLHLQGALLLHDVPYLAELLSGCPVLENLKQSLIFYQEYVPLTNREFNTLPKLVRADISETIFR MNMFNNVHFLRIDEICEGLLRGGECMFYNLTHIELVYANYNYDWFEVVKFLKYCPKLQVLVINQPDFYDYDLDQLHISDW QDPPSVPKCILLHLKVCYLNDYRGTKGELQFARYIMRHGRFLKRMTISSSTAENQRGKLKNVKKLFSCTRRSATCKFSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| ProSiteProfiles | 7 | 55 | 49 | 9.286 | ||
| PANTHER | 8 | 397 | 390 | 1.6E-72 | – | |
| PANTHER | 8 | 397 | 390 | 1.6E-72 | – | |
| SUPERFAMILY | 8 | 51 | 44 | 6.93E-12 | ||
| Pfam | 10 | 40 | 31 | 7.6E-6 | ||
| SMART | 13 | 54 | 42 | 0.005 | ||
| Phobius | 16 | 27 | 12 | - | – | |
| Phobius | 28 | 32 | 5 | - | – | |
| Phobius | 33 | 400 | 368 | - | – | |
| SUPERFAMILY | 123 | 304 | 182 | 1.29E-9 | – | |
| Pfam | 324 | 367 | 44 | 3.8E-14 | ||
| SMART | 328 | 400 | 73 | 1.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0400800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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