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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0401100 |
| Transcript ID | LotjaGi1g1v0401100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0401100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88904839..88907013) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGTTTCTACTGCGAATCTATTCACTTCAACATCAAACCCTCAGAGTCAGCTCACTATCACTGCAAATGGCGAAACCC TAGATTCCAATTTCCACAAATCCATCACTCAAATGTCGTTTCATGGTTGATATGTGAGCTTAAGATGAAGAAGATGAAGA CGAACGATAGAATTAGCAACTTACCAGACGCAATCCTCTGCCACATTCTCAGTTTTCTCCCAACCAAGCAAGCGGTTGCC ACCACCGTTCTCTCCAAGAGGTGGAAGCCACTATGGCGTTCAACCACCGCTCTCGACTTCGACGACGACGCCTATCTTGG AAGAACCAAAGAGGTTTATTCCAGCTTCATTCAATTCGTGTACGCTGTTCTTCTCTCCCGAGATTTCACCCAACCCATCA CAAAATTCCGCATCAGTTCTCAATCCCGACACTTCGACAACCCTTCCCATGTCATCGTGTGGGTTAATGCTGTATTGCAG CGCCGAATCGAGCACCTTGAAATCTCGCTCCCATTTTCTGAAACCCCTGTTAAACCCATCAACTGGTCTTCCATCTTCAG TTGCAGAACTCTCGTGGTTCTCAAGTTGCAGGGGTTAGATTTGACACCCATTTCCTCTGTTGATCTTCCATTGCTTAAAG TCCTGCATTTACAAGAATTGCATTTCCGAAAACTTGGATGTCTCGCTGAGCTTCTATTCGGATGTCCGGTTCTTGAAGAT TTGTTTGAAAGGGATTTGTGTTATGCCATTTATTCGACTCGCAGGAAGTTTAAAACTTTACCCAAGTTGGTCAGAGCACA TATTTCAGAAGGATATCCTATAGTGGAAGTGATTAACAATGTCAAGTTTTTGCGGATAGACCAGGTATTGTGGTCCTGGT CTATCCATCATTCATTTATATTCTTAAAGAAAATGGGATATTTGATTTCTAGTTATTGTAACTCATGCAGGATTGTTATC ATCTCCCTGGGCATGGACATCGTTATGGTGAACGTATAGACATGTTTCACAATTTAACCCATGTTGAAATCGTCTATGCC AACTTTAATGAAGATTGGTTTGAGGTAGTGGAATTTCTCACGCATTGCCCCAAGCTTCAAACTCTCGTCATTAGCCAGGT TTGCTTAGAGGCTTAGGATTCAATATCTTTGTCACATCTCACATGTTTCCATTTATTTACTTAATTTTTTGTGTATTGTT AACAGCCAAAGTTTCATGAATACGGTCTTGGTGAGTACGAAGTAGGATTTGGGCAATACCCACTACATGTTCCTAAATGC ATTCTACGACACCTTAAAGAATGCTATTTAAATGATTATCGAGGCACAAAAGGTGAGTTTCAATTTGCAAGATATATTAT GCGGAATGGAAGGGTTTTAAAGAGGATGTCAATATGCAGTAGCACTGCTGAAAAGCAAAGAAGAAAGCTTAAGAATTTAA CAAAATTATCCTCATGCATGAGGCGCTCATCATCGTGTAAACTTTTCTTTAAATGATAACAAACTAGCTACGCAAAAGGA TATGGACCTTGTCTTAATTTTTAAATTAGTTAACTGGCTATTTACTGATAATTTCTTGTAAATTTGAGATATACTGCTGA AGTGTGAGGAAATTGTATGTCTTATCTTGTGCAAATCTCCATGGTCTCTCTCATACAAGCATAGTCACATAGTTGTTTGT TCATAGATTACTCTTCTGTCTTCTGATAGTATTAATTTTCTTATTATCGTGTATATCAATGATGTAGTAGCGATGCAGCA GAACTTGGTTAGAAATTAACTGTTCACATAAGACTGTTTTATCCTTTCAATAAGAAAAGGTTATACTTATTGGTAGGTTG AATTTTATTTTATTTTGTGTTAAACCGGTGTTTTTTTCTATTATTTTCTTTTAGTTTTGGTACGATGTCAACTTGCTAGG TTCATGAGATCTTACGCACGTAAGTTTCTTTTCATCTAATATGAGCAATTGGGATATTGGTAGGCTTTGTTGGGAAGTCC ACTGCTGTGGTCTTCATGCCTCTTAATGGCTTAGTCTCTGGTTGTCGACAGATGGTACCCTTGTTGCACATCAAAGTTTA AGTAATTGGAATATTGAAGCTGTTTAGATTGCTTGCTAGTGCACTATAGTAACAATCAGATAAACCTGATATGAATGAAC TGATTTATAATATAT
CDS sequence (LotjaGi1g1v0401100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGATGAAGACGAACGATAGAATTAGCAACTTACCAGACGCAATCCTCTGCCACATTCTCAGTTTTCTCCCAAC CAAGCAAGCGGTTGCCACCACCGTTCTCTCCAAGAGGTGGAAGCCACTATGGCGTTCAACCACCGCTCTCGACTTCGACG ACGACGCCTATCTTGGAAGAACCAAAGAGGTTTATTCCAGCTTCATTCAATTCGTGTACGCTGTTCTTCTCTCCCGAGAT TTCACCCAACCCATCACAAAATTCCGCATCAGTTCTCAATCCCGACACTTCGACAACCCTTCCCATGTCATCGTGTGGGT TAATGCTGTATTGCAGCGCCGAATCGAGCACCTTGAAATCTCGCTCCCATTTTCTGAAACCCCTGTTAAACCCATCAACT GGTCTTCCATCTTCAGTTGCAGAACTCTCGTGGTTCTCAAGTTGCAGGGGTTAGATTTGACACCCATTTCCTCTGTTGAT CTTCCATTGCTTAAAGTCCTGCATTTACAAGAATTGCATTTCCGAAAACTTGGATGTCTCGCTGAGCTTCTATTCGGATG TCCGGTTCTTGAAGATTTGTTTGAAAGGGATTTGTGTTATGCCATTTATTCGACTCGCAGGAAGTTTAAAACTTTACCCA AGTTGGTCAGAGCACATATTTCAGAAGGATATCCTATAGTGGAAGTGATTAACAATGTCAAGTTTTTGCGGATAGACCAG GATTGTTATCATCTCCCTGGGCATGGACATCGTTATGGTGAACGTATAGACATGTTTCACAATTTAACCCATGTTGAAAT CGTCTATGCCAACTTTAATGAAGATTGGTTTGAGGTAGTGGAATTTCTCACGCATTGCCCCAAGCTTCAAACTCTCGTCA TTAGCCAGCCAAAGTTTCATGAATACGGTCTTGGTGAGTACGAAGTAGGATTTGGGCAATACCCACTACATGTTCCTAAA TGCATTCTACGACACCTTAAAGAATGCTATTTAAATGATTATCGAGGCACAAAAGGTGAGTTTCAATTTGCAAGATATAT TATGCGGAATGGAAGGGTTTTAAAGAGGATGTCAATATGCAGTAGCACTGCTGAAAAGCAAAGAAGAAAGCTTAAGAATT TAACAAAATTATCCTCATGCATGAGGCGCTCATCATCGTGTAAACTTTTCTTTAAATGA
Protein sequence (LotjaGi1g1v0401100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKMKTNDRISNLPDAILCHILSFLPTKQAVATTVLSKRWKPLWRSTTALDFDDDAYLGRTKEVYSSFIQFVYAVLLSRD FTQPITKFRISSQSRHFDNPSHVIVWVNAVLQRRIEHLEISLPFSETPVKPINWSSIFSCRTLVVLKLQGLDLTPISSVD LPLLKVLHLQELHFRKLGCLAELLFGCPVLEDLFERDLCYAIYSTRRKFKTLPKLVRAHISEGYPIVEVINNVKFLRIDQ DCYHLPGHGHRYGERIDMFHNLTHVEIVYANFNEDWFEVVEFLTHCPKLQTLVISQPKFHEYGLGEYEVGFGQYPLHVPK CILRHLKECYLNDYRGTKGEFQFARYIMRNGRVLKRMSICSSTAEKQRRKLKNLTKLSSCMRRSSSCKLFFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| Gene3D | 4 | 296 | 293 | 9.0E-23 | ||
| PANTHER | 7 | 389 | 383 | 6.4E-76 | – | |
| ProSiteProfiles | 7 | 60 | 54 | 9.365 | ||
| PANTHER | 7 | 389 | 383 | 6.4E-76 | – | |
| SUPERFAMILY | 8 | 50 | 43 | 5.76E-12 | ||
| Pfam | 9 | 45 | 37 | 2.4E-7 | ||
| SMART | 13 | 54 | 42 | 0.0075 | ||
| Phobius | 16 | 27 | 12 | - | – | |
| Phobius | 28 | 32 | 5 | - | – | |
| Phobius | 33 | 392 | 360 | - | – | |
| SUPERFAMILY | 132 | 299 | 168 | 7.46E-10 | – | |
| Pfam | 315 | 359 | 45 | 9.4E-14 | ||
| SMART | 320 | 392 | 73 | 3.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0401100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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