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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0402000 |
| Transcript ID | LotjaGi1g1v0402000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89047856..89051387) extracted from Lotus japonicus Gifu genome v1.2.
TTACTCTGTCCGTTCATCCATGTCCTCTGACGGTGCGAGTCCGCCGGAAGCCGCGTCTGTGTCTACCATCGAGGTAAATC ATTTGATCGATCACAGTTGTAATTTGTAAACCCTAAACCCAAACAACAATTGCTATTGCTACTGTATCTATCTATCAATC TCACTTTGTGAATTCAATTCAATTCAGATTCAGATTCAAACACTGCATATTGACATGGATCGAGATTTGATAATTGAAAT CCTTTTGAGGTTGCCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGTTATGGAGATCTCTCATATCCGATCCCC TCTTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGACTCTCATGCCATTCGAACCATTGACTTA GAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTTGTCTAATTATCATGATTTATCCTTGCC TCGTAACTGTATTTCGATTCACGGTTCGTGTAGAGGCTTTCTGCTAATCACCTGGATTAGGAATATTGGTTATCAGCACC CGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAACCAATACTTTCATCTCCTGTTGTTGACACC AATGTTTTTGATCATCTATATGGATTTGGTTACCATTCCTTGACAGATGACTACTTGGTGGTTCGAGTGCCCGTTACGGA CTGTTACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGCTAATATGTGGAAATATACCGAGGGTGTTG ATTTGCCTCCCTTGACCACTATTGAACCTTGTCATGGATTGCTCTTTAACGAGGCTATTCACTGGGCGGTTAGTAACTGG GTCGATGGTGTTACGAACATGTTTATTATTGCCTTTGATTTAATGGAAAAGAGACTCTTAGAGATACCCATGCCTCATGG TCTTCTTTTCCCTTGTTTTGAATTGTGGGTGCATGGAAGATTTTTAAGTCTATCAATTATGCAGAGAGATGGTACATGTG AAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGGACCAAGACTCTTGTTCTATCTACGGAGATATATCACTTC CCAATATGCTCTACAAAAGGTGGTGATATTGTTATATATTCTGGATCAAAAGTAAAAAAGTATAGTGGTGAAGGAGTAGA ACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAGATGCATCAGTGCCCATATATACAGAGTCAATGCTTT CACTCCCTGATGTTAGCGACTGAAATCTCCACAAGAGCTTCGATTTGTAAGTAAGCTCCTCAACTTTCACTTTCAATTTG TTAGAAACACATTTATTTCCCTTTTAATATGCCTTCTATTATAGTTGTAATGTTTGTGGAGTTATAGTTCTAGTCGTTAA ATATCTGGAGATTCATCCAAGCAGTAGGGAGTTTTTTAATGGCTTTTAGAGGCAACTTTGGACTAACAATCCTAACCACA AAGACTCTAATAGTTGCTGTTTTGGTTTGGATTCTAACTTTGTGGAACCTTACTATGCTGGATGTAGTGAACTCCTTTTC AAAGATGGAAAGACTAATAGTTTCATATAGGTAACAACCATGGCAATATAATGACACAAAACCTATCATTGATTACAATT CTAAGATGACAAGAATAGGATTAGGCTCACTCGAAAATGAAAGTAGGAAAATGGGTGATTTTATGCCTATTGTGATTTTG GTGGAGGGATAGGAGATCCTCTGCAATGAAATTCTAAAACTGAGTTGTTGGAAGCTGTACTGAAAAACCTTAATTATGGT TGTGGCTTTCGTTATGCTTTCAATTCATTCATTCATTACTACCCACAATGTGAAGAAAGATCCATTTATTATTTGAAAAC AAACATATAGACATTTTAAATAGGTTTCTTTTACTAGAACAATGTGTGGAAATGATGTACAAGAACAGTATTTAGACTTT TAATTCTTAATATCAAGTTAAGTTAAGGAATAATTGATCATGAGATGGATTGTCACGAAACTTCTGTAATTCAGAAAAAT CAATTTGCTACAAGTCCATGTTCATTTTACTATCTCAAACAGCTGCATATATCATGATGTCATGATGAGGCTGCTAGATG GCAAAGTAATCTGCAGTGGTAGAAGAAGAATAAATTCAAGGGCATGTAATTTGATCCATTTTTGTGAGGCTCATCTAGGA AATAGTTCATATCACAACTAAGGGCATATTTGAATAAGAATCTCAAAAGGGTTACAAAATTATGGTTTGATCTCTTACTT TGGTTTCTCGTAATAGCACTTTGACAGATCTTAATATTGATTAGTTGGAAATGAATTGGTATCAAATGTTGTTTCATATT GTTGATAGTGATGGACTTTTAATCTGCTATGTATTTTAAGCTTTAATCTAATGAGAGATTTTTTTAATTATAAGTATATG AAATGTTATGGTACTTATGATCTGAGTTTTTGTTATTGGTTTTGACTTTTGAGCAGCAGTTAGTGGGTCTGGTAGCATCA TTCACGTATGTTGGTGAAGTGATCAATGAAAAATTGGGTCAAACAGAAGCTGAAATCCTTCATTGAGGTCCATGGAGAAG AAAGGAAGCCATGGGGAGTCCATTAGGATCTTGACTACAAGGAGCGAAGACCCAGTTAATTTATATGAAGGATTACGAGC CCTATGGAGGTTTTATTTCAATTAATCAATTGATTTCAAATTATTGGAACAAATGTTTTATTTGTAATTTAATCTCTACA AATAATAGCTCGGTTAATTTATTTGTAATCAGAGTTTTTTTCTACATTCTCATTATATTTTGGATTAATGGTATATTAAA CTATTTGTGTGACAACTTTTTTTAATTGTTAGAACATATATTTATATCAACTCACATATTCAATTCTTGCATACTATACT TTCGTATACCTCACGTTATATGTTAAAAAAGTTCACGGGGACGAACAATTTGCACGTATAAATGAGGATGTTAAGATTTA TAGTTGACAAACTTTTAAGTAAGGGGTAACATACGCACAGTCTAGGATTATCTGGAGTTTAATTGCATGTTTCAATTTAA ATGGGGAGGAACATTTTTTGTTTTAACATTTTAACAATGACAATATAATGACACAAAACCTATCATTGATTATAATTCTA AGACGACAAGAATCGGTTTAGGCTCACTCGAATATGGAAGTAGGAAATGGGGGGCTGAGATCCTCTCCAGTGAAATCCTC TCAAGTTTTCTCCAATGGACATTTGTGTTTGGACCGCCACAAAATGTTTCCAGCTGCCACAAAGTCTGTCAATTTTTTCA GTAGAGAATTTCACTAGAGAGGATCCGGACCCGGAAATGGGTGATTTTGGTGGAGGGATAGGATGTCCATTGCAATGAAA TTCTAAAACTGTGTTCTTAGGAGCTGTACTAACAAACCTTAATATAAATGTGTTTTTTTTCCTTTCATTATGCTCTCAAT TGATTCATTGAT
CDS sequence (LotjaGi1g1v0402000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCTGACGGTGCGAGTCCGCCGGAAGCCGCGTCTGTGTCTACCATCGAGATTCAGATTCAAACACTGCATATTGA CATGGATCGAGATTTGATAATTGAAATCCTTTTGAGGTTGCCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGT TATGGAGATCTCTCATATCCGATCCCCTCTTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGAC TCTCATGCCATTCGAACCATTGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTT GTCTAATTATCATGATTTATCCTTGCCTCGTAACTGTATTTCGATTCACGGTTCGTGTAGAGGCTTTCTGCTAATCACCT GGATTAGGAATATTGGTTATCAGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAACCA ATACTTTCATCTCCTGTTGTTGACACCAATGTTTTTGATCATCTATATGGATTTGGTTACCATTCCTTGACAGATGACTA CTTGGTGGTTCGAGTGCCCGTTACGGACTGTTACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGCTA ATATGTGGAAATATACCGAGGGTGTTGATTTGCCTCCCTTGACCACTATTGAACCTTGTCATGGATTGCTCTTTAACGAG GCTATTCACTGGGCGGTTAGTAACTGGGTCGATGGTGTTACGAACATGTTTATTATTGCCTTTGATTTAATGGAAAAGAG ACTCTTAGAGATACCCATGCCTCATGGTCTTCTTTTCCCTTGTTTTGAATTGTGGGTGCATGGAAGATTTTTAAGTCTAT CAATTATGCAGAGAGATGGTACATGTGAAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGGACCAAGACTCTT GTTCTATCTACGGAGATATATCACTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTATATATTCTGGATCAAAAGT AAAAAAGTATAGTGGTGAAGGAGTAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAGATGCATCAG TGCCCATATATACAGAGTCAATGCTTTCACTCCCTGATGTTAGCGACTGA
Protein sequence (LotjaGi1g1v0402000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSDGASPPEAASVSTIEIQIQTLHIDMDRDLIIEILLRLPVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFAD SHAIRTIDLEGPLQSHRVSQPINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWNPSTHVHKP ILSSPVVDTNVFDHLYGFGYHSLTDDYLVVRVPVTDCYQPTHLPDVQFFSLRANMWKYTEGVDLPPLTTIEPCHGLLFNE AIHWAVSNWVDGVTNMFIIAFDLMEKRLLEIPMPHGLLFPCFELWVHGRFLSLSIMQRDGTCEIWVMKKYKVQTSWTKTL VLSTEIYHFPICSTKGGDIVIYSGSKVKKYSGEGVEQEEQLEYPNHCGLLDASVPIYTESMLSLPDVSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 382 | 359 | 7.7E-81 | – | |
| PANTHER | 24 | 382 | 359 | 7.7E-81 | – | |
| Gene3D | 27 | 64 | 38 | 4.1E-8 | – | |
| SMART | 28 | 68 | 41 | 4.3E-5 | ||
| SUPERFAMILY | 28 | 83 | 56 | 5.89E-14 | ||
| Pfam | 29 | 63 | 35 | 6.6E-7 | ||
| TIGRFAM | 135 | 344 | 210 | 6.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0402000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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