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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0402800 |
| Transcript ID | LotjaGi1g1v0402800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0402800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89198463..89201943) extracted from Lotus japonicus Gifu genome v1.2.
CGGAAAGTACCTTTCCGTATTCAGTTAAATTGAATACGGAAAGTACCTTTCCGTAGGGCACTTTTGGGTTTAAAAAAAAA GGGTGGGGCGCGCAGCCCCATAGGGGAGGCCCCAAACCCAACTCCCCATAACTCCAAATTGAAATGAAGGAAAACTCCTC CAATTTCACACAAGCCCAAAATCTATCTGAAAATTCATCATACGTTGCTTCCGTCGAAACCTGTTAACTCCCTCTCGACG CCGCCGCCGCCGCCAGAATACTTCGTCAAAAGCAGCGTCGAAACCCACGCTTACCCCTCCGATGGCCTCCCCGAGTTCAG CCCGTGCCTGCCTCTCAGTTAGCGACGCGCCGCCTTACTCTGTCCGTTCATCCATGTCCTCTGACGGTGCGAGTCCGCCG GAAGCCGCGTCTGTGTCTACCATCGAGGTAAATCATTTGATCGATCACAGTTGTAATTTGTAAACCCTAAACCCAAACAA CAATTGCTATTGCTACTGTATCTATCTATCAATCTCACTTTGTGAATTCAATTCAATTCAGATTCAGATTCAAACACTGC ATATTGACATGGATCGAGATTTGATAATTGAAATCCTTTTGAGGTTGCCGGTGAAGTCTATTGTACGATTCAAGGCTGTG TGCAAGTTATGGAGATCTCTCATATCCGATCCCCTATTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTT CGCTGACTCTCATGCCATTCGAACCATTGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTC ACTTTTTGTCTAATTATCATGATTTATCCTTGCCTCGTAACTGTATTTCGATTCACGGTTCGTGTAGAGGCTTTCTGCTA ATCACCTGGATTAGGAATATTGGTCGTCGGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCA CAAACCAATACCATCATCTCCTGTTGTTGACACCAATGTTTTTAGTCATCTATTTGGATTTGGTTACGATTCCTCGACAG ATGACTACTTGGTGGTTCGAGTGCCCGTTACGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTG AGAGCTAATATGTGGAAATATACCGAGGGTGTTGATTTGCCTCCCTTGACCACTATTGACCTTTGTCATGGATTGCTCTT TAACGAGGCTATTCACTGGGCGGTTAGTAACTGGGTCGATGGTGTTACGAACATGTTTATTATTGCCTTTGATTTAATGG AAAAGAGACTCTTAGAGATACCCATGCCTCATGGTCTTCTTTTCCCTGGTTTTACTTTGTGGGTGCATGGAAGATTTTTA AGTCTATCAATTTTGCAGAGAGATGGTACATGTGAAATATGGGTTATGAAGAAATACAAAGTACTGACATCTTGGACCAA GACTGTTCTATCTACGGGGAGCTTTCACTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTACATTCTGGAACAA AAGTGAAAAAGTATAGTGATGAAGGAGTAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAAATGCA TCAGTGCCCATATATACAGAGTCAATGCTTTCACTCCCTGATGTTAGCGACTGAAATCTCCACAAGAGCTTCGATTTGTA AGTAAGCTCCTCAACTTTCACTTTCAATTTGTTAGAAACACATTTATTTCCCTTTTAATATGCCTTCTATTATAGTTGTA ATGTTTGTGGAGTTATAGTTCTAGTCGTTAAATATCTGGAGATTCATCCATGTAGTAGGGAGTTTTTTAATGGCTTTTAG AGGCAACTTTGGACTAACAATCCTAACCACAAAGACTCTGATAGTTGCTGTTTTGGTTTGGATTCTAACTTTGTGGAACC TTACTATGCTGGATGTAGTGAACTCCTTTTCAAAGATGGATAGACTAATAGTTTCATATAGGTAACAACCATGGCAATAT AATGACACAAAACCTATCATTGATTACAATTCTAAGATGACAAGAATAGGATTAGGCTCACTCGAAAATGAAAGTAGGAA AATGGGTGATTTTATACCTATTGTGATTTTGGTGGAGGGATAGGAGATCCTCTGCAATGAAATTCTAAAACTGAGTTGTT GGAAGCTGTACTGAAAAACCTTAATTATGGTTGTGGCTTTCGTTATGCTTTCAATTCATTCATTCATTACTACCCACAAT GTGAAGAAAGATCCATTTATTATTTGAAAACAAACATATAGACATTTTAAATAGGTTTCTTTTACTAGAACAATGTGTGG AAATGATGTACAAAAACAGTATTTAGACTTTTAATTCTTAATATCAAGTTAAGTTAAGGAATAATTGATCATGAGATGGA TTGTCACGAAACTTCTGTAATTCAGAAAAATCAATTTGCTACAAGTCCATGTTCATTTTACTATCTTAAACAGCTGCATA TATCATGATGTCATGATGAGGCTGCTAGATGGCAAAGTAATCTGCAGTGGTAGAAGAAGAATAAATTCAAGGGCATGTAA TTTGATCCATTTTTGTGAGGCTCATCTAGGAAATAGTTCATATCACAACTAAGGGCATATTTGAATAAGAATCTCAAAAG GGTTACAAAATTATGGTTTGATCTCTTACTTTGGTTTCTCGTAATAGCACTTTGACAGATCTTAATATTGATTAGTTGGA AATGAATTGGTATCAAATGTTGTTTCATATTGTTGATAGTGATGGACTTTTAATCTGCTATGTATTTTAAGCTTTAATCT AATGAGAGATTTTTTAATTATAAGTATATGAAATGTTATGGTACTTATGATCTGAGTTTTTGTTATTGATTTTGACTTTT GAGCAGCAATTAGTGGGTCTGGTAGCATCATTCACGTATGTTGGTGAAGTGATCAATGAAAAATTGGGTCAAACAGAAGC TGAAATCCTTCATTGAGGTCCATGGAGAAGAAAGGAAGCCATGGGGAGAGTCCATTAGGATCTTGACTACAAGGAGCGAA GACCCAGTTAATTTATATGAAGGATTACGAGCCCTATGGAGGTTTTATTTCAAATTAATCAATTGATTTCAAATCATTGG AACAAATGTTTTATTTGCAATTTAATCTCTACAAATAATAGCTCGGTTAATTTATTTGTAATCAGAGTTTTTTTCTACAT TCTCATTATATTTTGGATTAATGGTATATTAAACTATTTGTGTGACAACTTTTTTTAATTGTTAGAACATATATTTATAT CAACTCACATATTCAATTCTTGCATACTATACTTTCGTATACCTCACGTTGTATGTTAAAAAAGTTCACGGGGACGAACA ATTTGCATGTATAAATGAGGATGTTAAGATTTATAGTTGACAAACTTTTAAGTAAGGGGTAACATACGCACAGTCTTGGA TTATCCGGAGTTTAATTGCATGTTTCAATTTAAATGGGGAG
CDS sequence (LotjaGi1g1v0402800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCCCCGAGTTCAGCCCGTGCCTGCCTCTCAGTTAGCGACGCGCCGCCTTACTCTGTCCGTTCATCCATGTCCTC TGACGGTGCGAGTCCGCCGGAAGCCGCGTCTGTGTCTACCATCGAGATTCAGATTCAAACACTGCATATTGACATGGATC GAGATTTGATAATTGAAATCCTTTTGAGGTTGCCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGTTATGGAGA TCTCTCATATCCGATCCCCTATTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGACTCTCATGC CATTCGAACCATTGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTTGTCTAATT ATCATGATTTATCCTTGCCTCGTAACTGTATTTCGATTCACGGTTCGTGTAGAGGCTTTCTGCTAATCACCTGGATTAGG AATATTGGTCGTCGGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAACCAATACCATC ATCTCCTGTTGTTGACACCAATGTTTTTAGTCATCTATTTGGATTTGGTTACGATTCCTCGACAGATGACTACTTGGTGG TTCGAGTGCCCGTTACGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGCTAATATGTGG AAATATACCGAGGGTGTTGATTTGCCTCCCTTGACCACTATTGACCTTTGTCATGGATTGCTCTTTAACGAGGCTATTCA CTGGGCGGTTAGTAACTGGGTCGATGGTGTTACGAACATGTTTATTATTGCCTTTGATTTAATGGAAAAGAGACTCTTAG AGATACCCATGCCTCATGGTCTTCTTTTCCCTGGTTTTACTTTGTGGGTGCATGGAAGATTTTTAAGTCTATCAATTTTG CAGAGAGATGGTACATGTGAAATATGGGTTATGAAGAAATACAAAGTACTGACATCTTGGACCAAGACTGTTCTATCTAC GGGGAGCTTTCACTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTACATTCTGGAACAAAAGTGAAAAAGTATA GTGATGAAGGAGTAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAAATGCATCAGTGCCCATATAT ACAGAGTCAATGCTTTCACTCCCTGATGTTAGCGACTGA
Protein sequence (LotjaGi1g1v0402800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPSSARACLSVSDAPPYSVRSSMSSDGASPPEAASVSTIEIQIQTLHIDMDRDLIIEILLRLPVKSIVRFKAVCKLWR SLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEGPLQSHRVSQPINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWIR NIGRRHPWNDSLYLWNPSTHVHKPIPSSPVVDTNVFSHLFGFGYDSSTDDYLVVRVPVTDGNQPTHLPDVQFFSLRANMW KYTEGVDLPPLTTIDLCHGLLFNEAIHWAVSNWVDGVTNMFIIAFDLMEKRLLEIPMPHGLLFPGFTLWVHGRFLSLSIL QRDGTCEIWVMKKYKVLTSWTKTVLSTGSFHFPICSTKGGDIVLHSGTKVKKYSDEGVEQEEQLEYPNHCGLLNASVPIY TESMLSLPDVSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| MobiDBLite | 17 | 34 | 18 | - | – | |
| PANTHER | 48 | 405 | 358 | 4.3E-80 | – | |
| PANTHER | 48 | 405 | 358 | 4.3E-80 | – | |
| Gene3D | 51 | 88 | 38 | 4.4E-8 | – | |
| SMART | 52 | 92 | 41 | 4.3E-5 | ||
| SUPERFAMILY | 52 | 107 | 56 | 1.31E-13 | ||
| Pfam | 53 | 87 | 35 | 3.5E-7 | ||
| TIGRFAM | 150 | 344 | 195 | 5.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0402800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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