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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0405500 |
| Transcript ID | LotjaGi1g1v0405500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carotenoid cleavage dioxygenase; TAIR: AT4G32810.1 carotenoid cleavage dioxygenase 8; Swiss-Prot: sp|Q8LIY8|CCD8B_ORYSJ Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic; TrEMBL-Plants: tr|I1JUV6|I1JUV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0405500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89469650..89474248) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGAAAACAAACCATGTCTCCTAGTGGAAAGAATTTCCACCAATACAAGATTCCCACAAACGCAAGATAGCTTATCA CATGGACATAGATCAATACCTCCTTTATATATAAATTGATGAATCGTTCACACTCATGCAACCTCACTAAGAAGATAAAC TCTCTATTTTCCTCTTCTAGCGGCTCTTATCAATTTCTCCGACCCATAAGCATACACCAAAGACAAACTCCATTTTTTTT CCATGGCTTTCATAGCATCATCACCTATCATGAACTCCATTTCGTGGCCAACTATGGTTGTTTCTGACATGTCTCATATT GTCAAGGACGGGTTTTCATTTCGAAACAACAATAAGGGCATGCATAAAGGCCAACACCATCTTCAAGGCTTGACCGTTGC AAATGTTGCAAGTCCATCAGTGCCCGTGATTGCTCCACAAAGGGAGGAGCCGTCAGGGACCTCCGATGACGGCCACAGTC AGCACCACCATGTTGCATGGACTAGTATACCCCGAGAGAGATGGGAAGGAGAGTTGGCTGTTCAAGGACAAATACCATTC TGGCTGGTAATTAAGTCATGTCTTAAACTTCATATCACAAAAAAAAATTCCTTAGTGATCATTCCCCAACACTAAGTTTT TCAGGAAAAAATATATTCATAACCTTTCTTTTTTCAGTTTTCTTGACGAATAAATTCATTAATCATTTCAACTTGAAACT ATGTAATATATGTATTAAAAGATTAAACTAATGATATGCAATTAAATTTTATATTTTATATTATATGTATGATGTAACTT TTGCTTAAATTTCACCACCATTATTAGTAGGTCGCACAGCTTATATTATATTGTATCCGCCATTGAAACACACAGGCAAA TGGAAAAAGAACAGGAAATTTTGTTGTCACCAAGGAAAAGCATCTTCTTCTCTAGGATCAATTACATCCATAAATTATAA AAAAGAGTTTAATTTTGATGCACCGATGGTGTAAAGTTTTTTTACACCGTCAACCAATCAGATTTCAAGGATGTGACATG TCAATTAAAGAAATTAAATGAACAGAGAGATTTTCTCACATCCTTAAAATCTGATTGGTTGACGGTGTAAAAAAACTTTA CACCGTCGGTGCATCAAACTTTTCTCTTATAAAAATAATAACAAAAGCTGCTAATCTCACACGTAACATAGTTTAGTTGG TAATCGTTCTCGATTAATACCGTGTTAGCCAATGGGAAGCCAACAAACTACAAAAACAAAGTATATATTACTTGTAAGAT TAGTTTAAGAGTTGAATTTTGATGCACCGACGGTGTAAAGTTTTTTTACACCGTCAACCAATCAGATTTTAAGGATGTGA CATGTCAATTAAAGAAATTAAATGAAAAGAGAGATTTTCTCACATCCTTGAGATCTGACTGGTTGACGGTGTAAAAAAAC TTTACACCGTTGGTGCATCAAACTTTTTCTCTTAGTTTAATATCCAATTAATTAAATAAGCATTAACGTATCTTTGAACA TTATGTACTTGTATGCGGATTTCATCAGGTATCTCATATCTGTTTGCAGATTTCACCATATCAATCATTTCAAATTCGAA ATTAACTAGATTCCCAGAAGGGTATACAAGGAAACAAAATAATTAATTATACATACCCACTATTTTTTCTTATGTTTTCT ATGACATGATTTATAAACAACATGTACTATAAGTCTGCATCATCCTCATTCCTCATAATAATAACGTTAATGACCTTATA TAATAACTATGAAAGAATATTACATGCAGAAAGGAACGTATATAAGGAATGGCCCGGGCATGTGGCACATAGGGGACTAC AACTTCAGGCACCTCTTTGACGGCTACGCCACTCTGGTCAAGCTTAACTTCGAGAATGGCCGGTTAATCGCCGGCCACAG GCAAATCGAGTCTCAAGCCTACGAAGCCGCGAAGAAAAACCAGAAGATATGTTACCGTGAATTCTCTGAGGTGCCTAAAG CAGAAAGCTTCTTAGCCTACGTGGGGGAGCTCGCAAGCTTGTTCTCTGGCGCATCTCTCACTGATAACGCCAACACTGGC GTTGTCAAGCTCGGCGACGGGAGGGTGGTGTGTCTCACGGAGACCCAGAAAGGGTCCATTGTGATAGACCCTGACACACT GGACACGCTTAGGAAATTCGAGTACAGTGACTCTCTAGGGGGTCTAATTCACTCTGCACATCCCATTGTGACAGACAATG AGTTTTTAACGTTGCTTCCAGATCTTGTTAGACCAGGGTATGTCATGAACTAACTATTCTAAAAACTTAAATTATTCTAT TGGGTGAAGACACACGAATGATTTTATATTATATTTATAATAGGTACCTAGTGGTGAGAATGGAGCCTGGTACTAATGAG AGGAAGGTGATCGGTCGGGTCGACTGTCGCGGCGGGCCATCACCCGGTTGGGTCCATTCTTTCCCTGCTACTGACCACTA TGTTATTGTGCCTGAAATGCCTCTTAGATACTGTGCTCAGAATTTACTAAAGGCTGAGCCTACTCCACTGTACAAGTTCC AGTGGCACCCTGAATCCAAAGCTTTTATGCATGTCATGTGCAAGACTAGTGGAAAGATTGTAAGTAATAGTGTTATATAT CTCTGATGTGTATGATATGCTAATAGCTTTGCTCTATGTTCCATGTGTTGATTTTCTATATCCATCATATATGTCTTGGG GTTTAATTTTTTCCAAGTAACAATATTTAGACTCTCAAATAGTATAGACACCTCATTTTTTTCTCTCATCTCTATCATTA TCACATCCATCATATATATCATATCCATTACTTGTCTCTTCTATTCCTTTCTCATTTTGGGTGTCAGTCAGCTGTATACA CTGTCTGTGCATGTCTACAAATCAATTTTCTTATTTTTGGAATGTGATTTTGAAGGTGGCAAGTGTGGAAGTGCCTCTGT TCATCACTTTCCATTTCATAAATGCGTACGAAGAGGAAGATGAAGATGGGAGGGTGACGGCAGTTATTGCTGACTGTTGT GAGCACAATTCAAATACTGACATTCTTGAAAGGCTTAGATTACAGAATCTTCGCTCATTCAATGGCCAAGATGTTCTGCC AGATGCTAAGTACTGATTTGTATCTTATTTTATCTTAATTGGCCTTTCCTGAACTGAAAGGTCATATAAGTGAATGCAAA ACTAAAACCATAGTTTAATGTATTGAATATTAATTAACAGGGTTGGTCGGTTCAGAATACCTCTGGATGGGAGTCCAAAT GGAACACTGGAACCAGCATTAGACCCAAATGAACATGGGAAAGGCATGGACATGTGCAGCATAAACCCTAACTATTTAGG GAAGAAATACAGATATGCCTATGCTTGTGGAGCAAACCGACCTTGTAACTTTCCCAACACCCTCACCAAGGTTTGTTAAT TTATAATTCAGTTCTTTATTTCTTTGCTTATATATATATATATATGTGTGTTTGTGTATGCGCGCGCGTGCGTGTCTTTG GTTCCTTAACCGAACGTTCTTAATTTGACATGTAATGTGCAGCTTGATTTAGAGTTGAAAAAGGCTAAGACCTGGTATGA TGAAGGTGCTGTGCCATCTGAACCATTCTTTGTGGCTCGACCAGGAGCAACAGAGGAAGATGATGGTTAGAACTAGCTAC TACATTTGAAGCCTGTTCTCTCTAATATTCAGCCCCTTCTTGTTCTCCATTACAATTGACCTGCAATGTCTAACCTAATT TATTTTCTCCCATATTGCAGGCGTGGTAATCTCTATAATCAGTGGGAAAAATGGAGAAGGATATGCTTTGTTGTTAGATG GCTCCACCTTTGAAGAGATTGCTAGAGCTGAGTTCCCTCATGGTATTCCATATGGATTGCATGGATGCTGGGTTCCAAAA AAGTAGAAGTATCACTAAAGACTGTTACTATCATATAGGGAAAAACAATGCAAGCATTACACCTCTATAAATTCTACTAG TTTTCACAGCCTTATTTTTCTTACATTCACCTCACTTCTCATATCTCGTTCTTCTGTTTCTTTCTTTTCCGACTCATGTT CAATCACATATCTATCATCTCCCTATCATGATCATGTATTCATGTTTATGTGGGTGTAATTGAGATGTATCTTAAATAAG TGTATAACACTCATTGCAGTTCTACTACTGTATGAGGGAAAGCTGATATAGTGATCCATAGGCATGTATGTGTGCATTAG AAAGTAGCATTTGTAAATTATAATTTATGTATTATTATCTGTGAATATATCTCAAATTTGAAGTTCAGATCCATGATAGA TAAGTTAGATATTAGCAATTATACAACATTCGAACCAGCTAAAAGAAATCCAAGTATCTAACTTATCCATGATAGATAAG TTAGATATTAGCAATTATACAAACCAACTCTTCTCTAGCAAGAGCCTATCTTGGTTGTTCTCACATAATAAAACGCATCT TCAAAATCACTAAGATGTGTTTGGGTCAACAACTAAATCTCAGCGAGTTTAAGACCATAAACATTTATTGCAATAAACTA ATTTGAGAAGCTTATTGAAATAAGCTCAAAATAATTATA
CDS sequence (LotjaGi1g1v0405500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCATAGCATCATCACCTATCATGAACTCCATTTCGTGGCCAACTATGGTTGTTTCTGACATGTCTCATATTGT CAAGGACGGGTTTTCATTTCGAAACAACAATAAGGGCATGCATAAAGGCCAACACCATCTTCAAGGCTTGACCGTTGCAA ATGTTGCAAGTCCATCAGTGCCCGTGATTGCTCCACAAAGGGAGGAGCCGTCAGGGACCTCCGATGACGGCCACAGTCAG CACCACCATGTTGCATGGACTAGTATACCCCGAGAGAGATGGGAAGGAGAGTTGGCTGTTCAAGGACAAATACCATTCTG GCTGAAAGGAACGTATATAAGGAATGGCCCGGGCATGTGGCACATAGGGGACTACAACTTCAGGCACCTCTTTGACGGCT ACGCCACTCTGGTCAAGCTTAACTTCGAGAATGGCCGGTTAATCGCCGGCCACAGGCAAATCGAGTCTCAAGCCTACGAA GCCGCGAAGAAAAACCAGAAGATATGTTACCGTGAATTCTCTGAGGTGCCTAAAGCAGAAAGCTTCTTAGCCTACGTGGG GGAGCTCGCAAGCTTGTTCTCTGGCGCATCTCTCACTGATAACGCCAACACTGGCGTTGTCAAGCTCGGCGACGGGAGGG TGGTGTGTCTCACGGAGACCCAGAAAGGGTCCATTGTGATAGACCCTGACACACTGGACACGCTTAGGAAATTCGAGTAC AGTGACTCTCTAGGGGGTCTAATTCACTCTGCACATCCCATTGTGACAGACAATGAGTTTTTAACGTTGCTTCCAGATCT TGTTAGACCAGGGTACCTAGTGGTGAGAATGGAGCCTGGTACTAATGAGAGGAAGGTGATCGGTCGGGTCGACTGTCGCG GCGGGCCATCACCCGGTTGGGTCCATTCTTTCCCTGCTACTGACCACTATGTTATTGTGCCTGAAATGCCTCTTAGATAC TGTGCTCAGAATTTACTAAAGGCTGAGCCTACTCCACTGTACAAGTTCCAGTGGCACCCTGAATCCAAAGCTTTTATGCA TGTCATGTGCAAGACTAGTGGAAAGATTGTGGCAAGTGTGGAAGTGCCTCTGTTCATCACTTTCCATTTCATAAATGCGT ACGAAGAGGAAGATGAAGATGGGAGGGTGACGGCAGTTATTGCTGACTGTTGTGAGCACAATTCAAATACTGACATTCTT GAAAGGCTTAGATTACAGAATCTTCGCTCATTCAATGGCCAAGATGTTCTGCCAGATGCTAAGGTTGGTCGGTTCAGAAT ACCTCTGGATGGGAGTCCAAATGGAACACTGGAACCAGCATTAGACCCAAATGAACATGGGAAAGGCATGGACATGTGCA GCATAAACCCTAACTATTTAGGGAAGAAATACAGATATGCCTATGCTTGTGGAGCAAACCGACCTTGTAACTTTCCCAAC ACCCTCACCAAGCTTGATTTAGAGTTGAAAAAGGCTAAGACCTGGTATGATGAAGGTGCTGTGCCATCTGAACCATTCTT TGTGGCTCGACCAGGAGCAACAGAGGAAGATGATGGCGTGGTAATCTCTATAATCAGTGGGAAAAATGGAGAAGGATATG CTTTGTTGTTAGATGGCTCCACCTTTGAAGAGATTGCTAGAGCTGAGTTCCCTCATGGTATTCCATATGGATTGCATGGA TGCTGGGTTCCAAAAAAGTAG
Protein sequence (LotjaGi1g1v0405500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFIASSPIMNSISWPTMVVSDMSHIVKDGFSFRNNNKGMHKGQHHLQGLTVANVASPSVPVIAPQREEPSGTSDDGHSQ HHHVAWTSIPRERWEGELAVQGQIPFWLKGTYIRNGPGMWHIGDYNFRHLFDGYATLVKLNFENGRLIAGHRQIESQAYE AAKKNQKICYREFSEVPKAESFLAYVGELASLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVIDPDTLDTLRKFEY SDSLGGLIHSAHPIVTDNEFLTLLPDLVRPGYLVVRMEPGTNERKVIGRVDCRGGPSPGWVHSFPATDHYVIVPEMPLRY CAQNLLKAEPTPLYKFQWHPESKAFMHVMCKTSGKIVASVEVPLFITFHFINAYEEEDEDGRVTAVIADCCEHNSNTDIL ERLRLQNLRSFNGQDVLPDAKVGRFRIPLDGSPNGTLEPALDPNEHGKGMDMCSINPNYLGKKYRYAYACGANRPCNFPN TLTKLDLELKKAKTWYDEGAVPSEPFFVARPGATEEDDGVVISIISGKNGEGYALLLDGSTFEEIARAEFPHGIPYGLHG CWVPKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 51 | 565 | 515 | 1.2E-249 | – | |
| PANTHER | 51 | 565 | 515 | 1.2E-249 | ||
| MobiDBLite | 64 | 83 | 20 | - | – | |
| Pfam | 97 | 564 | 468 | 5.8E-98 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0405500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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