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LotjaGi1g1v0406500.2

Overview

Field Value
Gene ID LotjaGi1g1v0406500
Transcript ID LotjaGi1g1v0406500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Homeobox leucine-zipper protein; TAIR: AT4G32880.1 homeobox-leucine zipper protein ATHB-8; Swiss-Prot: sp|Q39123|ATHB8_ARATH Homeobox-leucine zipper protein ATHB-8; TrEMBL-Plants: tr|A0A0L9TDD2|A0A0L9TDD2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0406500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:89543309..89549302) extracted from Lotus japonicus Gifu genome v1.2.

ATGATGGCGGTGAGTTCAGGGTCCTCCAGAGATGGGAGCAAGGTGGCAATGGATAACGGGAAATACGTCCGGTACACGCC GGAGCAGGTGGAAGCACTTGAAAGGCTTTACCATGAATGCCCCAAACCCACCTCCCTCCGCCGCCAACAACTCATCAGAG AGTGCCCCATTCTCTCTCACATAGAACCTAAGCAGATCAAGGTTTGGTTCCAAAACAGAAGGTAACTTACTATTATTAGC ACGTTTGGATCAGCTTTTATTTTCTCGTAATCAATTCTAGCACTAGAAGAAGCTAGTTACATAAGTTTCTCGCGAATTTT GACTTTAGAATTAATTGTAGAAGTATTTTCAAAGACGAACCATCAACCGTGACTTCATAGTTTTTGATGATTGATCTGTG TGAATCTGGTTTTCATATATTTTCTTTCTGCATCTACTTTCTACTTTCTGATCATATCCTCTTTTTATTTTCTACTTTTC GTTTTTGATGAAGAACCATGAACACTAGTTAGGTACTCACTTAGATTGGTGTTGATTTTATATATTTTCCTTGACACCCC TTATAAGATTGAAACCAAAGTTCTTCTCTTTATTTTCTCTCCTCTTGTGGATAAGTGTTTAAGGCCTTATTCTGGTGGCT AAATATGTGTGCAGGTGCAGAGAGAAGCAGAGGAAAGAATCATCACGGCTGCAAGCTGTGAACAGGAAGCTAACAGCGAT GAATAAACTATTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGTTGGTGTACGAGAATGGCTTTTTCCGCC AACAAACACAGAATGTAATATACTATATAGTACTATACATTATACAATCAAATCTAATATTTTTCTTATCATAAATCATC ATTCTTTATAGCCTACTGGCTACTACTATCATTGTCATTCCTAGTTGGTTTGGTCAATGAAGAAGTCTAGCTACTGAGAT CAAAGTTAGGTGAATCTATTATTCTCTGTAGATTTTCTGCAGAATCAGAATCTAGTCAAAAAGATTATTTTTTGTTTTGT GGGGTGAGAGGCATTTCATTTCAATTCAATGTTTTAATTTGAGTCGTGGTTGTTTGTTTTTCTCAGGCCACCCTTGCCAC CACGGATACGAGCTGTGACTCGGTGGTAACCAGCGGTCAACGCCACTTGACACCGCAGAATCCACCGAGGGATGCTAGCC CTGCAGGGTTAGTGAACAGTAAATTTTATTAAAAGCTAGTTAATTTTTTATCATGTCTTGTTGTTGGGATCCTATGATTT TTTTTTTCTGTCCTTGTACTGATGGATATGGAATATTGTTCTGTGCTGTCTTTGTCTTTTTCTGCATTCTCCAGACTTTT GTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAA TGAAGGTTACTAGTTACTGCAACCTTTTTTTCTTACACCACTTTACTGTGTTAACTATTGATTCATTTGACTCCAATAAG TGAAGTACTTGCACATTGTAAGTGCATTGTTAGCAAACATTTTTTCCTCACAATTAATTTTAACACCATTAAATTACTCA CAGAAGTTTCCTATTAGAATTAATTTTGGTTTTAGAATCAACTGAAAAATGATTTTCAAACATGCACAAGAATCACTAGA CACTTCATAACACATTATCTCACCTTTTTGTCTTCTTTGTTCACTTTTTCCACATGCAACATTTCATGTTCTAAGTGAGC TACAAGGATATTCATTCATCAACACATAACCAATATCTTCTTTCTTCTTCTCTGAATAATTTGATGTTAATCTTCTTTTA TTCAATGTTTGTAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCTGCACGTGCC TGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTAAGTTCCATCCAGCTTGCTATCGTAATTAGAAAACTAATCCCATTGAA GTGGGGAAGTAATGAGTTTTCATGTTGTGTACAGGTTGCTGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCC GAACTGTGGATGTTCTGAATGTGATGTCCACTGGAAATGGAGGAACCATTGAACTGCTTTACATGCAGGTACTACTAATA TAATTTCTTAGTCTCAATAATTTATGCTAAATGCAAATCTTAACATATGCCATCTTGTATTCTTAGTTGTATGCGCCAAC AACTTTAGCACCAGGTCGTGATTTCTGGTTGCTGCGCTACACATCTCTTATGGAGGACGGTAGTCTTGTGGTATGTATTC TCATTGAAGTTCTCACGTTTTCCTTCATCCTTGCCTAGACTTTAATGATCTTTCATGATTTTAACAATGCCAGGTATGTG AAAGATCACTTAATAACACTCAGAATGGTCCTGCTATGCCTCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGC GGGTATCTGATTAGACCTTGCGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGATTTTAGAGGTTTGTAAATG CATTTATAAAAAAAAGCAAAATCATTCAGATGTTTGATCACTTGCAATTAATTTGCTGGCTCTTTAACCTCAGCCCTGGA GTGTACCTGAAGTTTTGCGCCCGCTGTATGAATCATCTATGCTGCTTGCTCAGAGGACAACAATGGCAGTAAGACTATTT TTTCTTCTCACTAACTTTCACTATGCTAAACTAGTTGGTATCATAAATGCACGGCTTGTAAAGTTTGGTATTTTCACTGG CTAATTACTGTATTAATGTAGTTCCATATGTGGACATTAGCTTTTCAATGGAGATAAAAATATGAAGGGATGGAATTTGG ACTAACTGTTTTTGTAACCCTGCAATTGTCATTCAGGCTTTACGTCATTTGAGGCAGATTTCTCAAGAAGTTTCTCAGCC ATGTGTCACGGGATGGGGAAGAAGGCCTGCAGCCCTACGTGCCCTTAGTCAGCGATTGTGCAAGTATGTTTCATTATCCT TCACATTGTTCCTTGAAATATATCATGTTTGGATCAATTTCACTTTTCTCAAAATCAATTATGACAATAAGAAGCTAATC GCAATAGCTTTTCTCCAGAATTGATTTTAGAATTAGTTATTGAATAATTTCCAAACATGCTAATAATGGACTAGTTACGA TAACTCATCTTGTTTTTTTTTTTTTGCAGGGGCTTTAATGAAGCTGTGAATGGATTTGCAGATGATGGCTGGTCCATGTT AGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCACCCAGCAAGATGATGGGTGCAAATCTTGGATATA GCAATGGATTCCCATCCATGCCCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGTTACAGGTATAATTCTTTAATACT CCATAATGTGGACTGATGCTATTGCTCATTGCTCAGCTCTTAGGAATTGCTTTTACTTTCTATTGTTTTCAAGCAATTGA TTTCCATGTATTTAGTTGTCTCATGCTCTTTTTCTGTCTTTGTAGAATGTCCCTCCAGCTATTCTTCTTAGATTCTTGCG GGAGCACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGCCCCTGTAGCTTGC CAGGGGCCAGAGGAAGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGAATGAAGAGGCAAGTTGTTTT CTCCTAATTTTATAATCTAGTACATATTTACTATTTAGAAATTACCATTTAATCTTCCAACATGAAATTGAATACATGTT AACTTGGCTTGTGGATTATATTAACTTTTTTGTGTTTCTCTTCCGGCATATTACATACTAACTGACACTTTATCTCTAAA ATAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATCGGGACGACATGACTATGCCTGGTGATGTTTTCCTCT TGCAAGTAAGTACTGCTCCATGATGCCATTCTTTTCAACATATCTATGTCCATACCTTACAGCATCATGGAAAAATTCAT AAAATTTTAATTGAGGGAATGCCTTCAATTAAAATCCACTAATATTCTGTTGGTTAATTTTTCTCATTCGCTAACTAATC GTCCCTGGCTTCTAGAGTTTGCAAAGAATAAGATGCATCAAATATCATGAATGGATTTGCATGTAGTTATAGGAATAGTC AGGAATTAAGGATCTATATGAAGTTTGATTTTAATTGAATAGCTATAACACTTGCGCCTGCATATAGTTCAGAAGGTTTA ATCCAATATCAAGTTTATAGCTAACAGTGTTTGTTGCTGCACCTGTCATCAGCTTTGCAGTGGAGTGGATGAGCATGCAG TTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCGTCTTTCTCTGATGATGCACCCATTTTACCTTCCGGTTTT CGTATTGTACCTCTTGATTCTGGCACGGCAAGTCTTTAGCTTGACACATGATTTGATTGTGTTGTTTTTGAAATTTGCTT GCTTGCTTTAGTTTTCCCTTTTTCTTTGAGTAAGGATTCTGATTTCTGTCTTATATAAGATGCAGGATGCTGCTAGTCCA AACCGGACACTTGATCTTGCCTCATCACTTGAGGTTGGAACCACAGCAAACAAAGCTGCTGGTGCCAATTCAGGTCATTC TGGAAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGATAATATAGCAACTATGG CCCGACAATATGTGCGTAGTATTGTTGCATCTGTTCAGAGGGTTTCCTTAGCACTTTCTCCTTCGCGCTTCGGTTCTCAA AGTGCTTTTCACTTACCACCTGGTACTCCTGAGGCTCAAACACTTGCTCGGTGGATCTGTAACAGCTATAGGTATGGCAG TTGAAACCTTCACTATCTGTTACTGCAATTCATGATCTTATCTTGGAGTGGCGCTGTACACTCCATGCTTATCAGTGCCC CAATTTTCTTGAATTACCAATGAAGCATAGAGCCAAACTTATAGCATGTTTGGAAATTCTTCAGCAATTGATTTTAAAGT CAAAATAAATTGTGGGGAGAAGCTCCTTGCTATTGTTTCTCTACTAATTGTGTCATGGTGACTCATGGGATTTAGTTTTG ATCCTGATGACTACTTAGTAGACATTCTAATTTCTAGACCTAGATTAAACTGTCCAATGTGTTTTAAATGTTGGCATTCT TTGCAGGTTCTATCTAGGGGTAGAGCTACTAAAGTGTGAAGGCAGTGAGCCCATTCTCAAATCCCTTTGGCATCACTCAG ATGCAGTTCTGTGCTGCTCTTTAAAGGTAGCGAATTAAATATATTGAACTTCATCACATGACTTAAGTAAATTTTCTATT ATGGATGTTCCATTGTAATAGATAGGTTGCTTATTTAATGTACCTTGTCTCTGTTAACTTTATTCTTTCTTTTTCTTCTT TCTTGCCTAATGATAATATTTAAGAAAAGTATAACTTTATATGATTTTGCCAGGCATTACCGGTTTTTACATTTGCAAAT CAAGCTGGACTTGACATGCTTGAAACAACATTGGTTGCCCTTCAAGACATCACCCTGGAGAAAATCTTTGATGACAACGG AAAGAAAATCCTGTGCTCTGAGTTCCCCCAGATAATGCAGCAGGTATAGTGTGTTTTTAACAAAACTAGAGAAAATTAGT TTTCCATGTTACTCTCCATTGTTTTTCCCTAGCACAGATTGAAATATGATATTTGGCCTTCAATTTTTAACTATTATTTT GGTTCAGGGTTTCATGTGTATGCAAGGTGGCATCTGTTTGTCCAGCATGGGGAGGCCAATATCCTATGAGAGAGCAGTGG CATGGAAAGTGTTAAACGAAGAAGAATCAGCTCATTGCATCTGTTTCATGTTCATCAATTGGTCCTTTGTCTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0406500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGCGGTGAGTTCAGGGTCCTCCAGAGATGGGAGCAAGGTGGCAATGGATAACGGGAAATACGTCCGGTACACGCC GGAGCAGGTGGAAGCACTTGAAAGGCTTTACCATGAATGCCCCAAACCCACCTCCCTCCGCCGCCAACAACTCATCAGAG AGTGCCCCATTCTCTCTCACATAGAACCTAAGCAGATCAAGGTTTGGTTCCAAAACAGAAGGTGCAGAGAGAAGCAGAGG AAAGAATCATCACGGCTGCAAGCTGTGAACAGGAAGCTAACAGCGATGAATAAACTATTGATGGAGGAAAACGACAGATT GCAGAAGCAGGTGTCACAGTTGGTGTACGAGAATGGCTTTTTCCGCCAACAAACACAGAATGCCACCCTTGCCACCACGG ATACGAGCTGTGACTCGGTGGTAACCAGCGGTCAACGCCACTTGACACCGCAGAATCCACCGAGGGATGCTAGCCCTGCA GGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAAT GCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCTGCACGTGCCT GCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCTGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACT GTGGATGTTCTGAATGTGATGTCCACTGGAAATGGAGGAACCATTGAACTGCTTTACATGCAGTTGTATGCGCCAACAAC TTTAGCACCAGGTCGTGATTTCTGGTTGCTGCGCTACACATCTCTTATGGAGGACGGTAGTCTTGTGGTATGTGAAAGAT CACTTAATAACACTCAGAATGGTCCTGCTATGCCTCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGCGGGTAT CTGATTAGACCTTGCGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGATTTTAGAGCCCTGGAGTGTACCTGA AGTTTTGCGCCCGCTGTATGAATCATCTATGCTGCTTGCTCAGAGGACAACAATGGCAGCTTTACGTCATTTGAGGCAGA TTTCTCAAGAAGTTTCTCAGCCATGTGTCACGGGATGGGGAAGAAGGCCTGCAGCCCTACGTGCCCTTAGTCAGCGATTG TGCAAGGGCTTTAATGAAGCTGTGAATGGATTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGT CACCCTTCTTGTGAATTCATCACCCAGCAAGATGATGGGTGCAAATCTTGGATATAGCAATGGATTCCCATCCATGCCCA GTTCTGTGCTATGTGCCAAAGCATCCATGTTGTTACAGAATGTCCCTCCAGCTATTCTTCTTAGATTCTTGCGGGAGCAC CGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTGCCATTAAAGCTGGCCCCTGTAGCTTGCCAGGGGC CAGAGGAAGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGAATGAAGAGTTCATGGAGGTTATTAAGC TTGAAAACATGGGCTACTATCGGGACGACATGACTATGCCTGGTGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGAT GAGCATGCAGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCGTCTTTCTCTGATGATGCACCCATTTTACC TTCCGGTTTTCGTATTGTACCTCTTGATTCTGGCACGGCAAGTCTTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0406500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMAVSSGSSRDGSKVAMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQR KESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGFFRQQTQNATLATTDTSCDSVVTSGQRHLTPQNPPRDASPA GLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRT VDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLMEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGY LIRPCEGGGSIIHIVDHMILEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPCVTGWGRRPAALRALSQRL CKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGANLGYSNGFPSMPSSVLCAKASMLLQNVPPAILLRFLREH RSEWADSSIDAYSAAAIKAGPCSLPGARGSFGGQVILPLAHTIENEEFMEVIKLENMGYYRDDMTMPGDVFLLQLCSGVD EHAVGTSAELVFAPIDASFSDDAPILPSGFRIVPLDSGTASL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45950
7 598 592 0.0 –
PANTHER
PTHR45950:SF11
7 598 592 0.0 –
Gene3D
G3DSA:1.10.10.60
12 87 76 5.5E-19 –
ProSiteProfiles
PS50071
16 80 65 15.516
IPR001356
SMART
SM00389
18 84 67 1.7E-15
IPR001356
SUPERFAMILY
SSF46689
20 82 63 4.71E-17
IPR009057
CDD
cd00086
21 81 61 5.4803E-17
IPR001356
Pfam
PF00046
21 79 59 1.4E-16
IPR001356
CDD
cd14686
73 112 40 4.5458E-7 –
Coils
Coil
86 117 32 - –
ProSiteProfiles
PS50848
155 357 203 23.525
IPR002913
CDD
cd08875
159 374 216 2.21991E-79 –
SUPERFAMILY
SSF55961
164 375 212 4.53E-35 –
SMART
SM00234
164 374 211 1.9E-39
IPR002913
Pfam
PF01852
165 373 209 3.1E-52
IPR002913
Gene3D
G3DSA:3.30.530.20
197 379 183 7.5E-17
IPR023393

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0406500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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