Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0407200 |
| Transcript ID | LotjaGi1g1v0407200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0407200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89677160..89680142) extracted from Lotus japonicus Gifu genome v1.2.
CGCCAACATACCAAGCCACAAGCCTTTGAATGAAGGAAAACTCCTCCAATTTCTCACAAGCCCAAAATCTAAGGCCCTAA AATTCCTCATAGAGAAAAAGAAAAAGGAGGCGAATCACAATTGAGTAAACGTGCTGTGCTGCTTCCGTCGACGCCTTATC TGTGTCTACCATCGAGGTAAGTCATTTGATCGATCACAATTGTAATTTGTAAACCCTAAACCCAAACAACAATTGCTATT GCTACTGTATCTATCTATCAATCTCACTTTGTGAATTCAATTCAATTCAGATTCAGATTCAAACACTGCATATTGACATG GATCGAGATTTGATAATTGAAATCCTTTTGAGGTTACCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGTTATG GAGATCTCTCATATCCGATCCCCTCTTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGACTCTC ATGCCATTCGAACCATTGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTTGTCT AATTATCATGATTTATCCTTGCCTGACAACCGTATTTCGATTGAAGGTTCGTGTAGAGGCTTTCTGCTAATCACCTGGAT TATTAATATTAGTCATCAGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAACCAATAC CATCATCTCCTGTTGTTGACACCAATGTTTTTAATCATCTATTTGGATTTGGTTACGATTCCTCGACAGATGACTACTTG GTGGTTCGAGTGCCCGTGGCGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGCTAATAT GTGGAAATATACTGAGGGTGTTGATTTGCCTCCCTTGACCACTATTGACACTTGTACTGGGTTGCTCTTTAACGAGGCTA TTCACTGGGCGGTTAGTAACTGGGTCGATGGTGTTACGACCATGTTTATTATTGCCTTTGATTTAATGGAAAAGAGACTC TTAGAGATACCCATGCCTCATGGTCTTCTTTTCCCTTGGTTTAATTTGTGGGTGCATGGAAGATTTTTAAGTCTATCAAT TATGCAGAGAGATGGTACATGTGAAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGGACCAAGACTGTTCTAT CTACGGGGAGCTTTCACTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTAGATTCTGGAACAAAAGTGAAAAAG TATAGTGATGAAGGAGTAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAGATGCATCAGTGCCCAT ATATACAGAGTCAATGCTTTCACTCCCTGATGTTAGCGACTGAAATCTCCACAAGAGCTTCGATTTGTAAGTAAGCTCCT CAACTTTCACTTTCAATTTGTTAGAAACACATTTATTTCCCTTTTAATATGCCTTCTATTATAGTTGTAATGTTTGTGGA GTTATAGTTCTAGTCGTTAAATATCTGGAGATTCATCCATGCAGTAGGGAGTTTTTTAATGGCTTTTAGAGGCAACTTTG GACTAACAATCCTAACCACAAAGACTCTAATAGTTGCTGTTTTGGTTTGGATTCTAACTTTGTGGAGCCTTACTATGCTG GATGTAGTGAACTCCTTTTCAAAGATGGAAAGACTAATAGTTTCATATAGGTAACAACCATGGCAATATAATGACACAAA ACCTATCATTGATTACAATTCTAAGATGACAAGAATAGGATTAGGCTCACTCGAAAATGAAAGTAGGAAAATGGGTGATT TTATGCCTATTGTGATTTTGGTGGAGGGATAGGAGATCCTCTGCAATGAAATTCTAAAACTGAGTTGTTGGAAGCTGTTC TAAAAAACCTTAATTATGGTTGTGGCTTTCGTTATGCTTTCAATTCATTCATTCATTACTACCCACAATGTGAAGAAAGA TCCATTTATTATTTGAAAACAAACATATAGACATTTTAAATAGGTTTCTTTTACTAGAACAATGTGTGGAAATGATGTAC AAGAACAGTATTTAGACTTTTAATTCTTAATATCAAGTTAAGTTAAGGAATAATTGATCATGAGATGGATTGTCACGAAA CTTACTGTAATTCAGAAAAATCAATTTGCTAGAAGTCCATGTTCAGTTTACTAGCTCAAACAGCTGCATATATCATGAGG TCATGATGAGGCTGCTAGATGGCAAAGTAATCTGCAGTGGTAGAAGAAGAATAAATTCAAGGGCATGTAATTTGATCCAT TTTTGTGAGGCTCATCTAGGAAATAGTTCATATCACAACTAAGGGCGTATTTGAATAAGAATCTCAAAAGGGTTACAAAA TTATGGTTTGATCTCTTACTTTGGTTTCTCGTAATAGCACTTTGACAGATCTTAATATTGATTACTTGGAAATGAATTGG TATCAAATGTTGTTTCATATTGTTGATAGTGATGGAATCTGCTATGTATTTTAAGCTTTAATCTAATGAGAGATTTTTTT AATTATAAGTATATGAAATGTTATGGTACTTATGATCTGAGTTTTTGTTATTGATTTTGACTTTTGAGCAGCAGTTAGTG GGGCTGGTAGCATCATTCACGTATATTGGTGAAGTGATCAATGAAAAATTGGCACAAACAGAAGCTGAAATCCTTCATTG AGGTCCATGGAGAAGAAAGGAAGCCATGGGGAGTCCATTAGGATCTTGACTACAAGGTCAATTGATTTCAAATCATTGGA ACAAATGTTTTATTTGCAATTTAATCTCTACCAATAATAGCTCGGTTAATTTATTTGTAATCAGAGTTTTTTTCTACATT CTCATTATATTTTGGATTAATGGTATATTAAACTATTTGTGTGACAACTTTTTTTAATTGTTAGAACATTTATTTATATC AACTCACATATTCAATTCTTGCA
CDS sequence (LotjaGi1g1v0407200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGAGATTTGATAATTGAAATCCTTTTGAGGTTACCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGTT ATGGAGATCTCTCATATCCGATCCCCTCTTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGACT CTCATGCCATTCGAACCATTGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTTG TCTAATTATCATGATTTATCCTTGCCTGACAACCGTATTTCGATTGAAGGTTCGTGTAGAGGCTTTCTGCTAATCACCTG GATTATTAATATTAGTCATCAGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAACCAA TACCATCATCTCCTGTTGTTGACACCAATGTTTTTAATCATCTATTTGGATTTGGTTACGATTCCTCGACAGATGACTAC TTGGTGGTTCGAGTGCCCGTGGCGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGCTAA TATGTGGAAATATACTGAGGGTGTTGATTTGCCTCCCTTGACCACTATTGACACTTGTACTGGGTTGCTCTTTAACGAGG CTATTCACTGGGCGGTTAGTAACTGGGTCGATGGTGTTACGACCATGTTTATTATTGCCTTTGATTTAATGGAAAAGAGA CTCTTAGAGATACCCATGCCTCATGGTCTTCTTTTCCCTTGGTTTAATTTGTGGGTGCATGGAAGATTTTTAAGTCTATC AATTATGCAGAGAGATGGTACATGTGAAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGGACCAAGACTGTTC TATCTACGGGGAGCTTTCACTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTAGATTCTGGAACAAAAGTGAAA AAGTATAGTGATGAAGGAGTAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAGATGCATCAGTGCC CATATATACAGAGTCAATGCTTTCACTCCCTGATGTTAGCGACTGA
Protein sequence (LotjaGi1g1v0407200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRDLIIEILLRLPVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEGPLQSHRVSQPINCHFL SNYHDLSLPDNRISIEGSCRGFLLITWIINISHQHPWNDSLYLWNPSTHVHKPIPSSPVVDTNVFNHLFGFGYDSSTDDY LVVRVPVADGNQPTHLPDVQFFSLRANMWKYTEGVDLPPLTTIDTCTGLLFNEAIHWAVSNWVDGVTTMFIIAFDLMEKR LLEIPMPHGLLFPWFNLWVHGRFLSLSIMQRDGTCEIWVMKKYKVQTSWTKTVLSTGSFHFPICSTKGGDIVLDSGTKVK KYSDEGVEQEEQLEYPNHCGLLDASVPIYTESMLSLPDVSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 37 | 37 | 4.2E-8 | – | |
| ProSiteProfiles | 1 | 45 | 45 | 9.021 | ||
| SMART | 1 | 41 | 41 | 4.3E-5 | ||
| PANTHER | 2 | 354 | 353 | 5.7E-80 | – | |
| PANTHER | 2 | 354 | 353 | 5.7E-80 | – | |
| SUPERFAMILY | 3 | 56 | 54 | 1.06E-12 | ||
| Pfam | 4 | 36 | 33 | 1.4E-6 | ||
| TIGRFAM | 112 | 293 | 182 | 3.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0407200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…