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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0407700 |
| Transcript ID | LotjaGi1g1v0407700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3S190|I3S190_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0407700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89730679..89734097) extracted from Lotus japonicus Gifu genome v1.2.
TGGACATCTAAGTAATAAGTATATTATTAATGTAGGATGTACAGTCAAAGTATTGAAAACAAAATAAGAATTGTCCCTAA GTGAGCTCAAAATTGAAAACAAAATAACTTGCATTCTGCTCCAAATAACTCCAAATTGAAATGAAGGAAAACTCCTCCAA TTTCACACAAGCCCAAAATCTATCTGAAAATTCATCATACGTTGCTTCCGTCGCCGCCGCCAGAATACTCAACGGCTCCA ACATCCTCCTCAGCGACTACGCCTCCGACGCTCACCCACGCTTGCCCCTCCGATGGCCTCCCCTCTCAGTTAGCGACGCG CCGCCTTACTCTGTCCGTTCATCCATGTCCTCTGACGGTGCGAGTCCGCCGGAAGCCGCGTCTGTGTCTACCATCGAGGT AAATCATTTGATCGATCACAGTTGTAATTTGTAAACCCTAAACCCAAACAACAATTGCTATTGCTACTGTATCTATCTAT CAATCTCACTTTGTGAATTCAATTCAATTCAGATTCAGATTCAAACACTGCATATTGACATGGATCGAGATTTGATAATT GAAATCCTTTTGAGGTTGCCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGTTATGGAGATCTCTCATATCCGA TCCCCTCTTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGACTCTCATGCCATTCGAACCATTG ACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTTGTCTAATTATCATGATTTATCG TCTAAACACGGTAACCGTATTTCGATTGAAGGTTCGTGTAGAGGCTTTCTGCTAATCACCTGGATTATTAATATTAGTCA TCAGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAACCAATACCTTCATCTCCTGTTG TTGACACCAATGTTTTTAATCATCTATTTGGATTTGGTTACGATTCCTCGACAGATGACTACTTGGTGGTTCGAGTGCCC GTGGCGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGCTAATATGTGGAAATATACTGA GGGTGTTGATTTGCCTCCCTTGACCACTATTGACACTTGTACTGGGTTGCTCTTTAACGAGGCTATTCACTGGGCGGTTA GTAACTGGGTCGATGGTGTTACGACCATGTTTATTATTGCCTTTGATTTAATGGAAAAGAGACTCTTAGAGATACCCATG CCTCATGGTCTTCTTTTCCCTTGGTTTAATTTGTGGGTGCATGGAAGATTTTTAAGTCTATCAATTATGCAGAGAGATGG TACATGTGAAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGGACCAAGACTGTTCTATCTACGGGGAGCTTTC ACTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTAGATTCTGGAACAAAAGTGAAAAAGTATAGTGATGAAGGA GTAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAGATGCATCAGTGCCCATATATACAGAGTCAAT GCTTTCACTCCCTGATGTTAGCGACTGAAATCTCCACAAGAGCTTCGATTTGTAAGTAAGCTCATCAACTTTCACTTTCA ATTTGTTAGAAACACATTTATTTCCCTTTTAATATGCCTTCTATTATAGTTGTAATGTTTGTGGAGTTATAGTTCTAGTC GTTAAATATCTGGAGATTCATCCATGCAGTAGGGAGTTTTTTAATGGCTTTTAGAGGCAACTTTGGACTAACAATCCTAA CCACAAAGACTCTAATAGTTGCTGTTTTGGTTTGGATTCTAACTTTGTGGAGCCTTACTATGCTGGATGTAGTGAACTCC TTTTCAAAGATGGAAAGACTAATAGTTTCATATAGGTAACAACCATGGCAATATAATGACACAAAACCTATCATTGATTA CAATTCTAAGATGACAAGAATAGGATTAGGCTCACTCGAAAATGAAAGTAGGAAAATGGGTGATTTTATGCCTATTGTGA TTTTGGTGGAGGGATAGGAGATCCTCTGCAATGAAATTCTAAAACTGAGTTGTTGGAAGCTGTTCTAAAAAACCTTAATT ATGGTTGTGGCTTTCGTTATGCTTTCAATTCATTCATTCATTACTACCCACAATGTGAAGAAAGATCCATTTATTATTTG AAAACAAACATATAGACATTTTAAATAGGTTTCTTTTACTAGAACAATGTGTGGAAATGATGTACAAGAACAGTATTTAG ACTTTTAATTCTTAATATCAAGTTAAGTTAAGGAATAATTGATCATGAGATGGATTGTCACGAAACTTACTGTAATTCAG AAAAATCAATTTGCTAGAAGTCCATGTTCAGTTTACTAGCTCAAACAGCTGCATATATCATGAGGTCATGATGAGGCTGC TAGATGGCAAAGTAATCTGCAGTGGTAGAAGAAGAATAAATTCAAGGGCATGTAATTTGATCCATTTTTGTGAGGCTCAT CTAGGAAATAGTTCATATCACAACTAAGGGCGTATTTGAATAAGAATCTCAAAAGGGTTACAAAATTATGGTTTGATCTC TTACTTTGGTTTCTCGTAATAGCACTTTGACAGATCTTAATATTGATTACTTGGAAATGAATTGGTATCAAATGTTGTTT CATATTGTTGATAGTGATGGAATCTGCTATGTATTTTAAGCTTTAATCTAATGAGAGATTTTTTTAATTATAAGTATATG AAATGTTATGGTACTTATGATCTGAGTTTTTGTTATTGATTTTGACTTTTGAGCAGCAGTTAGTGGGGCTGGTAGCATCA TTCACGTATATTGGTGAAGTGATCAATGAAAAATTGGCACAAACAGAAGCTGAAATCCTTCATAGAGGTCCATGGAGAAG AAAGGAAGCCATGGGGAGTCCATTAGGATCTTGACTACAAGGTCAATTGATTTCAAATCATTGGAACAAATGTTTTATTT GCAATTTAATCTCTACCAATAATAGCTCGGTTAATTTATTTGTAATCAGAGTTTTTTTCTACATTCTCATTATATTTTGG ATTAATGGTATATTAAACTATTTGTGTGACAACTTTTTTTAATTGTTAGAACATTTATTTATATCAACTCACATATTCAA TTCTTGCATACTATACTTTCGTATACCTCACGTTATATGTTAAAAAAGTTCACGGGGACGAACAATTTGCACGTATAAAT GAGGATGTTGAGATTTATAGTTGACAAACTTTTAAGTAAGGGGTAACATACGCACAGTCTAGGATTATCTGGAGTTTAAT TGCATGTTTCAATTTAAATGGGGAGGAACATTTTTTGTTTTAACATTTTAACAATGACA
CDS sequence (LotjaGi1g1v0407700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGAGATTTGATAATTGAAATCCTTTTGAGGTTGCCGGTGAAGTCTATTGTACGATTCAAGGCTGTGTGCAAGTT ATGGAGATCTCTCATATCCGATCCCCTCTTTGCATCATTACATTTTCAACGTGCTGCTCCTTCACTCCTTTTCGCTGACT CTCATGCCATTCGAACCATTGACTTAGAGGGACCGCTTCAATCTCATCGTGTTTCTCAACCAATCAATTGTCACTTTTTG TCTAATTATCATGATTTATCGTCTAAACACGGTAACCGTATTTCGATTGAAGGTTCGTGTAGAGGCTTTCTGCTAATCAC CTGGATTATTAATATTAGTCATCAGCACCCGTGGAATGATAGTCTCTACCTGTGGAATCCATCCACACATGTCCACAAAC CAATACCTTCATCTCCTGTTGTTGACACCAATGTTTTTAATCATCTATTTGGATTTGGTTACGATTCCTCGACAGATGAC TACTTGGTGGTTCGAGTGCCCGTGGCGGACGGTAACCAACCTACTCATTTACCAGATGTGCAGTTTTTCTCATTGAGAGC TAATATGTGGAAATATACTGAGGGTGTTGATTTGCCTCCCTTGACCACTATTGACACTTGTACTGGGTTGCTCTTTAACG AGGCTATTCACTGGGCGGTTAGTAACTGGGTCGATGGTGTTACGACCATGTTTATTATTGCCTTTGATTTAATGGAAAAG AGACTCTTAGAGATACCCATGCCTCATGGTCTTCTTTTCCCTTGGTTTAATTTGTGGGTGCATGGAAGATTTTTAAGTCT ATCAATTATGCAGAGAGATGGTACATGTGAAATATGGGTTATGAAGAAATACAAAGTACAGACATCTTGGACCAAGACTG TTCTATCTACGGGGAGCTTTCACTTCCCAATATGCTCTACAAAAGGTGGTGATATTGTTTTAGATTCTGGAACAAAAGTG AAAAAGTATAGTGATGAAGGAGTAGAACAAGAAGAACAACTAGAGTATCCGAACCATTGTGGTTTACTAGATGCATCAGT GCCCATATATACAGAGTCAATGCTTTCACTCCCTGATGTTAGCGACTGA
Protein sequence (LotjaGi1g1v0407700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRDLIIEILLRLPVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEGPLQSHRVSQPINCHFL SNYHDLSSKHGNRISIEGSCRGFLLITWIINISHQHPWNDSLYLWNPSTHVHKPIPSSPVVDTNVFNHLFGFGYDSSTDD YLVVRVPVADGNQPTHLPDVQFFSLRANMWKYTEGVDLPPLTTIDTCTGLLFNEAIHWAVSNWVDGVTTMFIIAFDLMEK RLLEIPMPHGLLFPWFNLWVHGRFLSLSIMQRDGTCEIWVMKKYKVQTSWTKTVLSTGSFHFPICSTKGGDIVLDSGTKV KKYSDEGVEQEEQLEYPNHCGLLDASVPIYTESMLSLPDVSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 37 | 37 | 4.2E-8 | – | |
| ProSiteProfiles | 1 | 45 | 45 | 9.021 | ||
| SMART | 1 | 41 | 41 | 4.3E-5 | ||
| PANTHER | 2 | 355 | 354 | 8.5E-80 | – | |
| PANTHER | 2 | 355 | 354 | 8.5E-80 | – | |
| SUPERFAMILY | 3 | 57 | 55 | 1.57E-12 | ||
| Pfam | 4 | 36 | 33 | 1.4E-6 | ||
| TIGRFAM | 113 | 294 | 182 | 3.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0407700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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