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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0410500 |
| Transcript ID | LotjaGi1g1v0410500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ergosterol biosynthetic protein 28; TAIR: AT1G10030.1 ergosterol biosynthesis protein; Swiss-Prot: sp|O80594|ERG28_ARATH Ergosterol biosynthetic protein 28; TrEMBL-Plants: tr|I3SL99|I3SL99_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0410500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90115681..90117762) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGGCGTTGGGATGGTGGCTGATCGTGGTTGGCACGCTCCGATTAGCCTCCGTGTGGTTCGGTTTCTTCGACATCTG GGCTCTCCGACTCGCCGTCTTCTCCAAAACCACCAGTAACTTCCTCTCTCTCTCTCTCTCTCACTCACTCACTCTCATCA ATCAATCAATGCATGAAATCCTCACATGTTTCTAGGTCAGATATTGTCGTTGTTTCCTATTTCAGCGCCTGCAACGGTTC ATTGGATCCAATGTTTCACAGCAATGAGATCTTCTAGATCCCAATGCACCGGAATTTGCTCGTATCTAACAGTAAAATGG TTGCAGGCATTGAACTTTAGGATTTCTCATATTCTAGATGCCAGTTATCTGCACCTGGTTTTTGCTTAGTGGTTAAACTA TTAACAACTTGCTCTTTGTTTAGGGTTAGTGTCAATAAGAAAGAATAAGGTAGCATTGACTTGTCTTATGAGTTATGACC ATGTATGCAAGTTGGATTTGATTGTGGGAATAATGAAATTTAGCTTGTTTGAAGGGAGAAACAGTGAATCTGCTCCTTAA TTTGACTGACAAATCTTCTGGATAAATGTGTTGATAATTGGCTATCAATGTGGAGGATTGTTTTTAGAACTTGGGAGATG GAAGAACATAGTTAATTAGTATTTTGACTGTTTTCAAATTGTGGTATTTCTTGTATAGAGATAAGAGATTTCAGATTCTT TGACATGTTCAATACTGTAATCATCCCTATCAACATATGTTTTCTGCTTACATACCGTTTCCGAGCCCTTGGTTTAACCT GAATCAGCTGTGTAACGCTAAACTCCAGGCTATATGATAATACCCTTTCTAAATTTACTTCTAAGAACCAAAACATAACA CTTGCTTATGCAGGGCCTGTATAGAAACAAAATATGAGGGGATTGAATTAGTTAAAACAAATTAATAAGCACTCGTATTC TGTAGTTGGGTTGAGTTTTTACTCTTAATACTTGGACAGTGGCAACGGCTGATGGATAATATGATACGTCTTTGTTTTAC CTAATTTCCTGTGATTTGATGGCATTAAAAATTTCAACTTAAATTCAACAATATTCATCACGGTGCATTAGCAAAGTTGT TTCTGCGTCCCTTGTTTAAGCTTTGTGTTCAGTATGATTTCAAATGTTATCCGGATGAGAACCATGAGAACTGATGAGAG TTCATTAATTGTTGCAGTGACTGAAATTCATGGACGCACATTTGGAACTTGGACACTGTTGACCTGCACCCTGTGCTATC TATGTGCATTCAATCTTGAAAATAAGCCTCTTTACCTGGCTACTTTGTTGTCATTCTTCTATGCATTGGGTCATTTTTTG ACCGAATACCTAATTTATCAAACAATGGAATTTTCAAATCTCACAACTGTCGGTATATTTGCAGGTATGATAAAGTCTAT TCTCGTATCCCACCAAATTGACTTGCATTAGCCATTACATTATTTTCCTTAATTTCAATCCCAAACGGTCTTTTCTTTTC GCCAATTATTTTTGTATATATCGTAGGTTATTTGTTTAGTCGTGCATGCCAACAAATTTTAGGCATTGTGAATTTGTAGA CTTAGAGTTAGAGTGTGTTGTATTTTCATTGAACTTAACACCGGTCCATCTTAAATTCAATACTATAAAATCATGCTTCT TTCTTTGGGCATTGAGATATGTGAAATCATGTTTGGGTTGAACGAAAAAACACATACTTACTCCATTCTTGATGCCTATT GGACTAGATGTCATTTTTGTGTAGGAATTATTTGCTGCTCTCTTTTTGCTTCCCGTGTAAATAAACAAAAAGAAAAAGTA TCCTATACCCAAATGCATTTCCGCTGCAGGCTCTGCTGTATACCTTCTGGTCCATTATTATTCTAGGAGGACCTCAGCCT GGCTTGGCTTATAATTGTCTTTTTGCTTTAGCATTATTTGCTCATGGATGAACCACATTTTCACATCTGAATTTTTTGAT AGGAACATCGATTGTATGGATGCTATTGCAATGGAATAATCACCAGAAAGTCCGGTTGAAGCCCTCTAAGAGAAAGGCTT AG
CDS sequence (LotjaGi1g1v0410500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCGTTGGGATGGTGGCTGATCGTGGTTGGCACGCTCCGATTAGCCTCCGTGTGGTTCGGTTTCTTCGACATCTG GGCTCTCCGACTCGCCGTCTTCTCCAAAACCACCATGACTGAAATTCATGGACGCACATTTGGAACTTGGACACTGTTGA CCTGCACCCTGTGCTATCTATGTGCATTCAATCTTGAAAATAAGCCTCTTTACCTGGCTACTTTGTTGTCATTCTTCTAT GCATTGGGTCATTTTTTGACCGAATACCTAATTTATCAAACAATGGAATTTTCAAATCTCACAACTGTCGGTATATTTGC AGGAACATCGATTGTATGGATGCTATTGCAATGGAATAATCACCAGAAAGTCCGGTTGAAGCCCTCTAAGAGAAAGGCTT AG
Protein sequence (LotjaGi1g1v0410500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKALGWWLIVVGTLRLASVWFGFFDIWALRLAVFSKTTMTEIHGRTFGTWTLLTCTLCYLCAFNLENKPLYLATLLSFFY ALGHFLTEYLIYQTMEFSNLTTVGIFAGTSIVWMLLQWNNHQKVRLKPSKRKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 122 | 122 | 2.3E-56 | ||
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 122 | 122 | 2.3E-56 | – | |
| Pfam | 3 | 100 | 98 | 7.9E-26 | ||
| Phobius | 6 | 27 | 22 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 28 | 46 | 19 | - | – | |
| TMHMM | 44 | 63 | 20 | - | – | |
| Phobius | 47 | 65 | 19 | - | – | |
| Phobius | 66 | 70 | 5 | - | – | |
| TMHMM | 70 | 92 | 23 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 96 | 6 | - | – | |
| Phobius | 97 | 116 | 20 | - | – | |
| TMHMM | 97 | 116 | 20 | - | – | |
| Phobius | 117 | 133 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0410500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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