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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0417500 |
| Transcript ID | LotjaGi1g1v0417500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation of fatty acids protein 3-like protein; TAIR: AT4G36830.1 GNS1/SUR4 membrane protein family; Swiss-Prot: sp|Q9SYY4|ELO3L_ARATH Elongation of fatty acids protein 3-like; TrEMBL-Plants: tr|A0A072V432|A0A072V432_MEDTR GNS1/SUR4 membrane family protein; Found in the gene: LotjaGi1g1v0417500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91147358..91149017) extracted from Lotus japonicus Gifu genome v1.2.
TGACGGTGACCAATGAAAAATCAGAACCTCTCTGTGGCATCTCGTCATGCATTAATTTTTATCTTAAATCCTTCTAGATG ATGAAGCTGCCAAGAAAATTCGAACAAAAGCAATAATGTTAGTCAAGGCCAAACAAGTATATAATCAAAGTCTTTGTGCC TTACAACACTACAAACAAATCTTAATTGGGATTCAACTTTGGTGGTCCAAAATTCCAAACTCCAAATCTCAATTCAATTT CACTCTCAAAATCTCATATTCATATTAGAGGATGCAAGAAATTTGCACCATGACACAAACACATTCAGTAATGGAGAATC TCAAATATTGGCTACTAGATCATCCATCCATTGTTTCATTCCGCTGGAGCCCTGCCGAATCGTGGGGCTCCACGTGGTGG TTCCTCATCTCGTCCATCTCATTCTACATCGCCACCGCGGTCACACTCCACCTCATCCTCAAACTCTTCCGCCGCAGCCG CCCCATCCCGCTCGGCCCCCTCCCGGCGGTCCACGCCCTCGCCATGGCCCTCATCTCCGTCACCACTTTCATCGGCATGT TCTTCTCCGCAAAAGCAGAGGCTATCGACACACGCTGGCTCTGGCGGCGAAACAGAGCAACCCCTCTCGAGTGGTTGCTT TGTTTCCCGCTTGGGATGAGACCCTCCGGCCGTGTCTTCTTCTGGTCCTACATCTTCTACCTCTCCCGCTTCCTCCACAT GTTCCGGACACTCTTCGTCGTCCTCCGCCACCGGAAGCTCTCGTTCTCGCGCCTCTTCAACAACTCTGTTCTCCTCCTCA TGGCCTTCCTCTGGCTTGAATTCTCACAGTCGCTTCAGGTGCTGGCGATTCTGTTTTCCTCCGCCGTTTGCTCCGTCGTG TACGGCTACCGGTTCTGGGTGGAAATCGGGTTGCCAAGGAAGGCTTTTCCGATCAGCGTGAACGTTCATTTTGTTCTGCT CGGTTGTAACTTGGCTTGCCATGTTGGGGTGCTTTTGCTGCATCATTGGAGAGGAGGGTGTAATGGGATCGGAGCTTGGG TTTTCAACTCTGTGTTGAATGTTTTCATTCTTCTGCAGATTTTGAAGTCCTATGTGAAAATTTACTGGAAGAGAAGGAAC AAGGGTGCTGCGAGTGATTGCTCTGCTTTGAAAACAGAGGAGGACATGGTTAAGCTTGCAAGTCAAGATGCCAAGTCAGG GCAATAGAATAGTACTGTGTTATACTCTTCGAGCCGGTTAGAACCACTATTGGCGGCAAAGCTCTTCCTACGAGTACTAT TTAACCCAGGCGCATTCACGAGTACTCAAACTTAAATCTCTAATTAAGCTAGAACAACCTTATGTCAATTGACCTACGCG GATCTTTGAGGTTCTTTTGAATGCTACCCTTTTCTTTTTTTGAAAAGTTTGTTATACCTTCTTGATTTAAGTTTTGATTA GGTCCACCTTCTTCTTTGTAATGTAGTGACTCTGTAAGGATACAGAGATTGTAAAGATTTAATTGACTACTTCTACATTG AAACTGTATAGTACAAAACAAAGAATCTAAATGAATGATAGTTCTTTTAACTTTTAATGTCATCTTCACAAAAAGAACTT AATGGTACAGCAAATTTTAGGAACCTAGGTAAGAAACTATTCTTTCTTGTATGATATGAG
CDS sequence (LotjaGi1g1v0417500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGAAATTTGCACCATGACACAAACACATTCAGTAATGGAGAATCTCAAATATTGGCTACTAGATCATCCATCCAT TGTTTCATTCCGCTGGAGCCCTGCCGAATCGTGGGGCTCCACGTGGTGGTTCCTCATCTCGTCCATCTCATTCTACATCG CCACCGCGGTCACACTCCACCTCATCCTCAAACTCTTCCGCCGCAGCCGCCCCATCCCGCTCGGCCCCCTCCCGGCGGTC CACGCCCTCGCCATGGCCCTCATCTCCGTCACCACTTTCATCGGCATGTTCTTCTCCGCAAAAGCAGAGGCTATCGACAC ACGCTGGCTCTGGCGGCGAAACAGAGCAACCCCTCTCGAGTGGTTGCTTTGTTTCCCGCTTGGGATGAGACCCTCCGGCC GTGTCTTCTTCTGGTCCTACATCTTCTACCTCTCCCGCTTCCTCCACATGTTCCGGACACTCTTCGTCGTCCTCCGCCAC CGGAAGCTCTCGTTCTCGCGCCTCTTCAACAACTCTGTTCTCCTCCTCATGGCCTTCCTCTGGCTTGAATTCTCACAGTC GCTTCAGGTGCTGGCGATTCTGTTTTCCTCCGCCGTTTGCTCCGTCGTGTACGGCTACCGGTTCTGGGTGGAAATCGGGT TGCCAAGGAAGGCTTTTCCGATCAGCGTGAACGTTCATTTTGTTCTGCTCGGTTGTAACTTGGCTTGCCATGTTGGGGTG CTTTTGCTGCATCATTGGAGAGGAGGGTGTAATGGGATCGGAGCTTGGGTTTTCAACTCTGTGTTGAATGTTTTCATTCT TCTGCAGATTTTGAAGTCCTATGTGAAAATTTACTGGAAGAGAAGGAACAAGGGTGCTGCGAGTGATTGCTCTGCTTTGA AAACAGAGGAGGACATGGTTAAGCTTGCAAGTCAAGATGCCAAGTCAGGGCAATAG
Protein sequence (LotjaGi1g1v0417500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQEICTMTQTHSVMENLKYWLLDHPSIVSFRWSPAESWGSTWWFLISSISFYIATAVTLHLILKLFRRSRPIPLGPLPAV HALAMALISVTTFIGMFFSAKAEAIDTRWLWRRNRATPLEWLLCFPLGMRPSGRVFFWSYIFYLSRFLHMFRTLFVVLRH RKLSFSRLFNNSVLLLMAFLWLEFSQSLQVLAILFSSAVCSVVYGYRFWVEIGLPRKAFPISVNVHFVLLGCNLACHVGV LLLHHWRGGCNGIGAWVFNSVLNVFILLQILKSYVKIYWKRRNKGAASDCSALKTEEDMVKLASQDAKSGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 14 | 295 | 282 | 1.3E-132 | ||
| PANTHER | 14 | 295 | 282 | 1.3E-132 | – | |
| Pfam | 40 | 284 | 245 | 1.6E-26 | ||
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 42 | 66 | 25 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 78 | 100 | 23 | - | – | |
| Phobius | 101 | 134 | 34 | - | – | |
| Phobius | 135 | 158 | 24 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 159 | 164 | 6 | - | – | |
| TMHMM | 163 | 182 | 20 | - | – | |
| Phobius | 165 | 182 | 18 | - | – | |
| Phobius | 183 | 187 | 5 | - | – | |
| TMHMM | 187 | 209 | 23 | - | – | |
| Phobius | 188 | 209 | 22 | - | – | |
| Phobius | 210 | 220 | 11 | - | – | |
| Phobius | 221 | 243 | 23 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 244 | 254 | 11 | - | – | |
| TMHMM | 253 | 275 | 23 | - | – | |
| Phobius | 255 | 275 | 21 | - | – | |
| Phobius | 276 | 311 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0417500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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