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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0419800 |
| Transcript ID | LotjaGi1g1v0419800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CBS domain protein; TAIR: AT1G47271.1 Cystathionine beta-synthase (CBS) family protein; Swiss-Prot: sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial; TrEMBL-Plants: tr|A0A1J7FPF2|A0A1J7FPF2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0419800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91334400..91337936) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCCTAAGATCTTGCACACCAAAATTAAGACATGTTTGTTAAGAAAATGAAAACATAATTATTTAATATAGTGAAAGA CTAGTTTTGAAGCATTTCAAGCATATCCAATATGGCTGAGCAGCTTTGAAGACTAGTTTGTAAACGAATGGTCATGAATT TTTCATACTCTTTCTTGATACAAATGTATATATTTTGGCGCAGAAAAAGTAGCTATGTTGTTAACATTAACAACGAAATA TCAAAATCATGTTATCATATGATCTCAAGTGAATAAGAGACTGTAATTTGTTGCAGAATCCCATAATCCTTTTTATCCTG AATTTCTAACCTCACCACAACTGACTTTGCAACCATGACGCCGAGGCTTGTCAGGGTTATCAGGATCAGAGTCACTAGGT TCCAGGAGAAGACCTCTGAGGCATCGTCTTCGAACAATGGGAGTGGGAACATGATTTAACCTCTCTGCCCGGTGAATCTT CACTTCAGGCCTGGGATTTTCCTTTTCAAAACATTGTTTATCCTCCTCAGGCTGTTGTTGAAGAATCACACGAACACCAG GGTCTCTTCCATTGATTGAACCGTGGGAGATCAATGAATTATTCATGCTCTGTATGTTGCTGTTCACATACGAAGAAGAG TTTTCTTCTCCATGTATTGATCCATTTTTCTTCCTTGTTGATTCGGCCACTTGCATTGTTGCTCCTCTGTTCTCACCAGC TAGAGTCATGACACTCACTCTTTTCTCATCCACAGTGGCTAGTTTATGATCAAAATTTGAAATGTCATCATCTATTGGCT TCTCATCGTTGGATATGGATGATACTTCCCTGATCACTGGATCTGAAGAAGCAGCAAGTTTGATGTCTTTTCCGCTGGAG CTAGGAAACACCATCTTCCTCTCTGATGTTAATAAAGATCCATGCTTTATGATGTCATTGCCTTTTCCTACTCTGATAGG TTCTTCTTCTTCCACCACTTTTTCCTTAGCTTTAGGTTCAGAAGATTGATGGGATTTGCTTGAAGGACCTGATATCCAAG GGATTCTAAAACGAAGTTGCAGCTTTTTATGTGGCATGGTGTAACAAAAACAACAGGATGAGTTCTTTAGATTTCATTAG TTGCCTTCTCTACATATATGCAGAACTAAGAATCTATACCTTGGATGTATTGTAGGAGTTTCATGGATTTTTTTTTTTGT GTTGACTCACTCACCAGTTGTTATTCCTCAGCATTTCACACTGATTCCCTTGAAAGCTTCTTATTATGTGCTTTGCTTCA GATTTATGTTTTAACCAAACATGTCTTGTGGTAACCATTTCTTATATCTTGTGGCGGAGGAAAGAAATTTCTTTTACATC TTACCAAAGAAACCACCAGAATATACTTCCCTTTGAGGTCTAATCATTCATATCATCCAAAAAGGTTCACCAGTTCCATC AATGTGAAAGCAACCATAAAGTTCCTTTCTTCATATTCTCCTTCAAGAAAAGAATTCAGAGACAAGCAAGTCATAAAGTA AACCATGCCTCCAAGCTATTCTTTGACAAATATGAAATACCAAAGAGGTAGTTCCTTAAACCTTTGCTGCTGGTAAACCA GAACCAACGCTACCAAATACCAAAATACCAATCAACTCTCAAGTATTCCTTGGCAGCAACATCAGGTACATAGAAACAAG TAACAAAAAAAAAATTATAATTTTATTGTTTATTTAATGTCTTAAGTCACATATGTCTCCAAGGAAGAACATCTATAATT TCTAGTGGTACTTTATAAACAATAAATTTTAGCCATTGCTTATATTTATTTTGGTTGAACAGAACAAGAATAACAAATGC AAGGAATTTACCGGATACTGCGACCTCACTATTATCCTCCAAGGGCTGCAATATTTCAACAATACCATGGGAATGGAATC ATTAACCCGAACAAGCTATCTGCAGGTTTTGGATGTGTCACAACCTCTCCACCAATGCAGCAGAAAGGATTGGAGAATGT CACAGTATCTGACGTGCTGATGACAAAAGGGGAAGACAAAAATGGTTCCTGGCTTTGGTGCAGAGTTGATGATGCTGTAA TCAATGCAATGAAGAATGTAAGATAGTTTCAATTTGTTCATATGTTTCCTCTAATTATAAGTTTCATAAGATTTGTTAAC AAACATGGTGTATGGATTTAGATGGCAGAAAATAATATTGGATCATTGGTGGTGCTAAATCCAGAAGGTCAGCATATAGC AGGCATTGTCACAGAACGAGGTATGAGTTTCCAATTAATTCATGTACTTCAAGTTAAGCTAGAATTTGTGCTACCCTTGT AAACCAAAGCAAACAATAGTGAACAAATGAAAACTTACTGAGACATGCGGTTTTCATCAATATCAAAACACACTTGAACG GCGGTTTATCACCAACCGCCGCTGAAGCGTGTGTTGATTGAATGTCCAATGAAAACCGGATATCCACGTATAACCACTCT CGCAAATTGAATCTCTTTGTTGGCTACATGCTTGAGCTGGCAGATTGCTTGAAGAAAATAATTGCACAAGGAAGGTCTCC TTTATACACACAAGTTGGTCAAATCATGACTGATGAGGTGATTTTACACTCTTTCATTTCCATTATATACAACTCAATTG AGCATTTTCATTGTGAGTGATGAGGTTACCTGTAAACAGAACAATCTGATAACAGTGACATCTGAAACCAACATTCTTCA AGCAATGAGACTTATGATAGGTAACTCTTCTGTTGTTCATTTGTCGCAACTCGCAATGCTTAAGTGATCAAAATTCAAAC ATCAAAGACCACTGCCTCTTTTTCTTGCAGAGAATCACATCCGGCATGTTCCGGTTATTGATGGGAAAATAGTTGGTATG ATTTCCATTGTAGATGTTGTAAGAGCAGTGATGGAGCAACAAGGTGGAGAACTGAAGCGACTCAATGACTACATCAAAGG AGATTACTATTAAACAAAAAAAATTCAAGCACTGATACACATTTCATGAAGCAAATTGCAAAATCTATGTAGCTAAAACA GAATACATCTTTGTATTTCAATTAGTAATTTGTTTGGTATTCTAATGACTACCAATTGAATAACATATGATCAATTTCAA TAATCATTCAGACAAAAATAAATTATCCATTGCAATTTTGTGCTCTGGTTTAGGGTTTCTACCTTGAGGATCGGATTCGT CTTTGAGCGGCGAGGGATGAGAAGGGAGAGCGAGGGGTCTGAACTGGAAGGGAGAGGAAGGAGTGAGGAAGCGCGATTGC CTACGGACGCGCGCCGGAAGGTGGCTGTTGCGGTGGTTGAAGGAGAAAGAGGAGGCGCGATTGGGGTTTGCGCCTACGGA GGCGAGACGGACGCGCACCGGAAGGTGGCTTGCGTCTACGGAAGCGAGATGGGCGAGCATCGGACGGTGGTTGAGATGGC GGAGAGGGAGGGTAGGGGAGCGGGTGAAAGCGGTTGTCGCCATTTTTGGCGGCAAGGAATGACGTGAACGAACCGCCACG GAATTTGGGCTTAATTT
CDS sequence (LotjaGi1g1v0419800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGAATTTACCGGATACTGCGACCTCACTATTATCCTCCAAGGGCTGCAATATTTCAACAATACCATGGGAATGG AATCATTAACCCGAACAAGCTATCTGCAGGTTTTGGATGTGTCACAACCTCTCCACCAATGCAGCAGAAAGGATTGGAGA ATGTCACAGTATCTGACGTGCTGATGACAAAAGGGGAAGACAAAAATGGTTCCTGGCTTTGGTGCAGAGTTGATGATGCT GTAATCAATGCAATGAAGAATATGGCAGAAAATAATATTGGATCATTGGTGGTGCTAAATCCAGAAGGTCAGCATATAGC AGGCATTGTCACAGAACGAGATTGCTTGAAGAAAATAATTGCACAAGGAAGGTCTCCTTTATACACACAAGTTGGTCAAA TCATGACTGATGAGAACAATCTGATAACAGTGACATCTGAAACCAACATTCTTCAAGCAATGAGACTTATGATAGAGAAT CACATCCGGCATGTTCCGGTTATTGATGGGAAAATAGTTGGTATGATTTCCATTGTAGATGTTGTAAGAGCAGTGATGGA GCAACAAGGTGGAGAACTGAAGCGACTCAATGACTACATCAAAGGAGATTACTATTAA
Protein sequence (LotjaGi1g1v0419800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGIYRILRPHYYPPRAAIFQQYHGNGIINPNKLSAGFGCVTTSPPMQQKGLENVTVSDVLMTKGEDKNGSWLWCRVDDA VINAMKNMAENNIGSLVVLNPEGQHIAGIVTERDCLKKIIAQGRSPLYTQVGQIMTDENNLITVTSETNILQAMRLMIEN HIRHVPVIDGKIVGMISIVDVVRAVMEQQGGELKRLNDYIKGDYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 205 | 205 | 1.4E-96 | – | |
| PANTHER | 1 | 205 | 205 | 1.4E-96 | – | |
| Gene3D | 45 | 202 | 158 | 2.1E-38 | – | |
| SUPERFAMILY | 52 | 191 | 140 | 6.06E-31 | – | |
| ProSiteProfiles | 62 | 127 | 66 | 10.55 | ||
| SMART | 71 | 120 | 50 | 1.3 | ||
| Pfam | 73 | 119 | 47 | 7.5E-6 | ||
| CDD | 75 | 183 | 109 | 9.09453E-42 | – | |
| Pfam | 131 | 186 | 56 | 8.5E-12 | ||
| ProSiteProfiles | 135 | 193 | 59 | 13.306 | ||
| SMART | 140 | 186 | 47 | 7.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0419800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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