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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0420900 |
| Transcript ID | LotjaGi1g1v0420900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ornithine carbamoyltransferase; TAIR: AT1G75330.1 ornithine carbamoyltransferase; Swiss-Prot: sp|Q43814|OTC_PEA Ornithine carbamoyltransferase, chloroplastic; TrEMBL-Plants: tr|I3SIH2|I3SIH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0420900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91464591..91468263) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTCACCATATAAAAAGGAAGAAGTGAAGTTTCAGTGAAAACTGAAAAAGAAAGAAAAAGCAGCAAAACGAATTGAAG CTTGTTGTTGGTGGCTGCTGTGAAATGGGTGTGATCTCGGGTCAATGTTACAGCACTCTCGGATCCTACAACAAACCCTT CTTCTCTTCTCAGACTCTCCGCCATTCAACTCCCTTTTCCGTTTCTTCTCCGCCACCTCGACTCAGAACAACAATTTCAT GTCGCGCCGTCGCCGCCGAATCTCCCCTCACCGGTAAAGCTACTCTCCGCCGCCTTTTCAATTTACTTCCCAAATTCGTT ATCATTCGATTCTGATTTCAGATACCAATTGCATCAAATTAGGGTTTTAGCATGCTATAAAGGGACTTGACAAAAATGCT ATAGTTAGTTAGATAGATAGTTAGTTAGTTAAGTTGCATGTTTTTAGGAACTGGGTTGGTATCAAAATCTTATCTTTTGA CTTGGGTTTGTTTTGTTTTACTGATTCTCTCAGCGAAAGTTGGGCTGAAAGATTTTATCCACATTGATGATTTTGACAAG GACACCATTTTGAAGATGTTAGATCGAGCCATTGAGGTCAAGGCTTTGCTCAAATCGGGGGACAGGTCGTTTCGGCCGTT TGAAGGGAAGACTATGTCTATGATATTTACAAAGCCGTCCATGAGAACGCGGGTCTCGTTCGAGACTGGCTTTTCGTTGT TGGGTGGCCATGCTGTTTATTTAGGACCTGATGATATTCAAATGGGTAAGCGAGAGGAGACTCGTGATGTTGCTCGTGTT TTGTCTCGCTACAATGACCTCATTATGGCTCGTGTTTTTGCTCATCAGGTATGTTGCTGCTGACTGCTGATGAGTTAGAG TTACTTGCATTTCATTTGGTTTTTCGACTACAATTACTCATGTACTCATATGCTATTAGATGCGTGGTTCATATAGCTGT TTATGCCAAATTTTCGTGGTTTTAAGATGTTATTAATCTTCAAGGCCCTCTTATATTTGATATGCTTGCATAAAATTGCA AAGGAAATATATGTAATGCTTGACCTTAAATATCTGTGGTATGGGCATATACAAAGAAGACCTACAGAGGCACCAGTGAG AAGAGTTGATAACATAGTATTTAGTCCAGTGAAGAGAGGTAGAGGGGAGCCAAAAAGAACATGGGAAGATATTGTTAAAA ATGACTTCATTATCAATAATATCCCTTATAATGTGGTTTTTGGTCGAGCTCAATGGCGTAGTGTGATCCATATAGCCGAC CTCACTTAGTGGGATAAGGCTTTTGTTGTTGTTGTTAATTGTGTGTTGCTTTTAGATAAGAAGTTCTTAATAGATGTTGC TACCTTTGCGTAATATAAAAGAGCAAATAAGTGAATATGCAACCAAGATACTTATATGGTGCTTACTGAAGAATGATGTC TGGGTCTGTTCTGTTTGGTTGGATAATGCTTGGTTGAACGAAAATTATTTCGTTCCTTTTGCACTAATGTTCATCTGTAA AGGAACTTTTTAGTGTTTCTTTATCCTGTGATATATGTTTCCTCTCTCTTCTCACACATTTGTGCAATTTGTCTCGTACT AAATATCACAGGTCTTTCTGACCTGTACTATTGGTTTTGTGTAATGTTGCGACCTTCAAATGACTGAACAGTATCTAATA AGAAGTTAGCAGTCCCTCCCCTGTGAACCTGTTTTCTGATCTGTTGCAAATTTTGTGGGTTTAATACCATAATGAAATAA GCTCCTTCACAATTGTGCTTGAGAGGGATTTTTATTTTCTCCAGAGATTTGATGAGTCTATCTGTCAATATACAAGAACT TTTGGTTTACTTTCTTTTGTAATTGCAGGATATACTTGACCTTGCAAAGTATGCAACTGTGCCAGTCATTAATGGGTTGA CAGATTACAATCATCCCGTCCAGATAATGGCTGATGCTCTTACTATGATTGAGCACATCGGTCGGGTTGAAGGTACCAAG GTCAGGTTATGTTGCTTGTCTTGAAGAGTTTGCTTCTTTCTAATTATTGGTGGCATACTGGCATTGGTAGAATAATTATC TTGATATTGTTCTGTGATACTCATGTCAGGTTGTATATGTTGGAGATGGAAATAATATTGTTCATTCATGGTTGTTGTTG GCATCAGTAATTCCCTTTCACTTCGTCTGTGCGTGTCCAAAAGGTTTTGAACCTGATGCAAAAACAGTTGAGAAGGCGAG GAAGGCTGGTATCAGCAAGATTGAGATAACTAATGATCCCAAAGAAGCTGTTAAAGGGGCTGACGTTGTGTATTCCGATG TCTGGGCCAGCATGGGCCAAAAGGAAGAAGCTGCATACCGTCGTGAAGTGTTCAAAGGATTTCAGGTACTTAATATTTTA GTCACAGAAGATATTGCTTTTGTGTAAGAAAAGATGACATGTTTTGATAAATTTGTAGCTTGAATTGTTTTCTTGTAGCC ACTTGGGATTTAGCTCAAAGAGTACAAGTGGGGTGGGTTTGTGCACAAATCATAGGTTCCGTTAGAAAATCTGTGTCCCT GATGTCCTGTGATTCAGCAATGGCGTTTGAGTTGTAGTTAAAAAATGAAATGATTTAACTTCTTTGTAACTCAATTGGCA GTGGCTGAAGTCATTAAAGACTTGGGTGTTCCTGGTGTTTCCCCCTTTTCCCTTCCCATTGCCAAGTTCCTGCCTGTAAC AAAAAATGGAAGTATATTGTTCTTAATTGATGAATAATAAGATAATAATTACATAAGTAAAATATTTAATTAGCAGTGCA TAGACTATATGGGGATGGGCTCATTTTTTAGGAATCATAACTATTGATTTACAATACCTAAAATCCATATTGAACAACGT CCCACCCTTACTTCCTAGTTCCCACTATAAGTTATGAAACAAGTCGCTCCACGAAATATTTTCTAACACTCTTGATAGGG TTGGGTGGACTGTTCATGGCTGTGAAAAACTCTGTCAACCCTCCCCCCCTCTTTTATCCTCTTTTATCCTTGTTTTCTCT ACTTTTATTTCAGTTGTAAGTTAATCGGTTATAAATGCTGTGTCTTTCACATGCTTGAATTGTTTAACTAGCATTTACGT TTAATCACAATTACATTTTGCAGGTGGACAAAATTCTTATGGATATTGCTGGTTCAAAGGCGTTTTTCATGCATTGCTTA CCAGCGGAAAGAGGGGTGGAGGTAACTGACGAAGTTGTTGAAGCTCCGTATTCAATAGTCTTTCCGCAAGCTGAGAACCG AATGCACGCACAAAATGCCATAATGCTCCATGTACTTGGCAAGTAGTTTGCTAGATGATAATCTAGTTTGAGGTTGAGCA GGATTAATGTACACTTGCAATAATCATTTCCTTCTCATGCTTATAGAAGTATTTTTGGTCTATAGAGTTGGAATTTGAGT TGCGTTTTTGTTAGTACTAGCCAGTGAAGAACAGCAGAATTGAATGAACATGCTAGTATGAAGTTTCTTTTTGGCTTAAA TAAGTTTTTGGTCCCTAACCTTTACCAAATGCTTGGTTTTCGTCCCTCGTCGGAGCAAAGGTGGGTTTTAGTCCCTAACC TTTGCCCCAAGATTTGGTTTTGGTCCCTCTGGAGCTCTGGGTCAACGCCGGAGCTCCGGTGACTCATGTGGCA
CDS sequence (LotjaGi1g1v0420900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGATCTCGGGTCAATGTTACAGCACTCTCGGATCCTACAACAAACCCTTCTTCTCTTCTCAGACTCTCCGCCA TTCAACTCCCTTTTCCGTTTCTTCTCCGCCACCTCGACTCAGAACAACAATTTCATGTCGCGCCGTCGCCGCCGAATCTC CCCTCACCGCGAAAGTTGGGCTGAAAGATTTTATCCACATTGATGATTTTGACAAGGACACCATTTTGAAGATGTTAGAT CGAGCCATTGAGGTCAAGGCTTTGCTCAAATCGGGGGACAGGTCGTTTCGGCCGTTTGAAGGGAAGACTATGTCTATGAT ATTTACAAAGCCGTCCATGAGAACGCGGGTCTCGTTCGAGACTGGCTTTTCGTTGTTGGGTGGCCATGCTGTTTATTTAG GACCTGATGATATTCAAATGGGTAAGCGAGAGGAGACTCGTGATGTTGCTCGTGTTTTGTCTCGCTACAATGACCTCATT ATGGCTCGTGTTTTTGCTCATCAGGATATACTTGACCTTGCAAAGTATGCAACTGTGCCAGTCATTAATGGGTTGACAGA TTACAATCATCCCGTCCAGATAATGGCTGATGCTCTTACTATGATTGAGCACATCGGTCGGGTTGAAGGTACCAAGGTTG TATATGTTGGAGATGGAAATAATATTGTTCATTCATGGTTGTTGTTGGCATCAGTAATTCCCTTTCACTTCGTCTGTGCG TGTCCAAAAGGTTTTGAACCTGATGCAAAAACAGTTGAGAAGGCGAGGAAGGCTGGTATCAGCAAGATTGAGATAACTAA TGATCCCAAAGAAGCTGTTAAAGGGGCTGACGTTGTGTATTCCGATGTCTGGGCCAGCATGGGCCAAAAGGAAGAAGCTG CATACCGTCGTGAAGTGTTCAAAGGATTTCAGGTGGACAAAATTCTTATGGATATTGCTGGTTCAAAGGCGTTTTTCATG CATTGCTTACCAGCGGAAAGAGGGGTGGAGGTAACTGACGAAGTTGTTGAAGCTCCGTATTCAATAGTCTTTCCGCAAGC TGAGAACCGAATGCACGCACAAAATGCCATAATGCTCCATGTACTTGGCAAGTAG
Protein sequence (LotjaGi1g1v0420900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVISGQCYSTLGSYNKPFFSSQTLRHSTPFSVSSPPPRLRTTISCRAVAAESPLTAKVGLKDFIHIDDFDKDTILKMLD RAIEVKALLKSGDRSFRPFEGKTMSMIFTKPSMRTRVSFETGFSLLGGHAVYLGPDDIQMGKREETRDVARVLSRYNDLI MARVFAHQDILDLAKYATVPVINGLTDYNHPVQIMADALTMIEHIGRVEGTKVVYVGDGNNIVHSWLLLASVIPFHFVCA CPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDVWASMGQKEEAAYRREVFKGFQVDKILMDIAGSKAFFM HCLPAERGVEVTDEVVEAPYSIVFPQAENRMHAQNAIMLHVLGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 363 | 327 | 1.8E-198 | – | |
| PANTHER | 37 | 363 | 327 | 1.8E-198 | – | |
| SUPERFAMILY | 61 | 363 | 303 | 2.36E-102 | ||
| Hamap | 61 | 363 | 303 | 71.181 | ||
| Pfam | 62 | 203 | 142 | 9.0E-46 | ||
| Gene3D | 62 | 192 | 131 | 3.9E-115 | ||
| TIGRFAM | 62 | 362 | 301 | 1.6E-112 | ||
| PRINTS | 106 | 120 | 15 | 5.3E-27 | ||
| PRINTS | 108 | 127 | 20 | 1.3E-24 | ||
| PRINTS | 139 | 152 | 14 | 5.3E-27 | ||
| PRINTS | 179 | 193 | 15 | 5.3E-27 | ||
| PRINTS | 190 | 201 | 12 | 1.3E-24 | ||
| Gene3D | 193 | 358 | 166 | 3.9E-115 | ||
| Pfam | 209 | 360 | 152 | 1.1E-53 | ||
| PRINTS | 279 | 289 | 11 | 5.3E-27 | ||
| PRINTS | 315 | 324 | 10 | 1.3E-24 | ||
| PRINTS | 327 | 350 | 24 | 1.3E-24 | ||
| PRINTS | 341 | 352 | 12 | 5.3E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ornithine carbamoyltransferase activity | Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Biological process | Ornithine metabolic process | The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. | ||
| Molecular function | Amino acid binding | Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents. | ||
| Molecular function | Carboxyl- or carbamoyltransferase activity | Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0420900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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