Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0421000 |
| Transcript ID | LotjaGi1g1v0421000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mannan endo-1,4-beta-mannosidase-like protein; TAIR: AT5G66460.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9FJZ3|MAN7_ARATH Mannan endo-1,4-beta-mannosidase 7; TrEMBL-Plants: tr|A0A072V2A7|A0A072V2A7_MEDTR Mannan endo-1,4-beta-mannosidase-like protein; Found in the gene: LotjaGi1g1v0421000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91488952..91492242) extracted from Lotus japonicus Gifu genome v1.2.
ACAAGAGAAATGATGAAGTTCTTTCTGGTTTTCTTAGTTTTTTGTGTGACACTGAAGCAGGGGATTGCAGATGATGATGG TGGGTTTGTGAAAGCAAGAGGAGTGCAGTTGATGCTGAATGGGAGCCCTTACTATGCTAATGGCTTCAATGCTTATTGGT TAATGTATTTTGCCTCTGATCCTTCTCAGAGAAACAAGGTTTCTTCAGCTTTTCAAGAGGCTGCAGATCATGGACTTAAC ATTGGCAGAACTTGGGCTTTCAGTGATGGTGGATATAAACCCCTTCAATACTCTCCTGGGTCCTATAATGAGGAAATGTT CCAGGTACGTCTTCAATCTTCAACTTTGTTTTCTCAATCTTAAATAAGAAATGATACTTACACCCTCAATCAATTAGTAC AGACACTCCACAAATACCTCAGTTTCAGTCTCTATTTCTCTGTGTTGTGTTTGTAGGGTGTCTTCACTTTAAAGATATCA ACAAATCAATTTCCATCTAAAATTTATGAAAATTGTAGAGAAAAACCTTCATATCGCACACCCCCAAATAGTTTTTGTTT TTCCTCTTTATCTCAAGTTGTACACTTCTATTTTCATTAGGGGTTGGATTTCGTAGTAGCTGAAGCTGGAAAACATGGAA TCAAGCTGATCTTGAGTTTGGTGAATAACTATGAGAATTTAGGAGGGAAGAAGCAGTACGTGGAGTGGGCAAGGAGTCAG GGCCAGTCCATAAATTCAGAAGATGATTTCTTCACAAATCCTGTTGTCAAGGGATACTACAAAAACCACATCAAGGTAAA CACTTTATTTTCTCTTTATCTTGTTTTCCCTATTTCCATGAACATTATCCATGTTAAGGGTCAGGATCTAGATAGACAGT GTTACTCAGATTTGATAGTAATTTTTTTAACTGAAGGGGGAGACGGAGAGATTATGAAATATGAGGTTAATTTCTTATAT TCACTTGACAGAGTTATCAATAATATTGAAGAGTGAATAAATCAATCACAAAAAAAAAAGCAGATGAGTGAAAGAATATC AATGGAAGACATTAAATTTCTCTGGAACTTAAACTTAAATGTTCTAATATTCTAGTGGCTGGTCAAATATTTGATGAACC TAACCAATTATTGTGGTTAAACTGCTCTGAGCATAAATGTTTCCACTTAATATGTTCAAACTTAGACCAAATAGATGCCA TGAATGACACTTGTAGAGTTGTGAGTAGTTTGAAAAGGTAAAAAAGAGATCTAACATTGGAGTTTTTATCTCCTTTACTA TAGACTGTGCTTACAAGACATAACAGCCTCACTGGAGTTGCTTACAAGGATGATCCGACTATAATGGCTTGGGAGCTTAT GAATGAGATTAGATGTCCTTCAGATCAATCAGGAAATTCGGTTCAGGTAAACCATGCATCTTCAGCTACTCTAAATGAAA TAATATATACATGATACATCTAAGTCTTGAGATTATTTTGTCAAATGTATTTATGTTTGGTCATGTAAAATGAGAAGGTA ATAAGAGAATTATAAAAATAAAAATTACCTTGTTTTTTAACTTCGATGACCATCGAGGTGTTTAGACACCAAGAGAGAGA AAAGAAGAGAATAAAGATAAGTAATGAATGTGATATATGATATGATAAGAAATGAGAGATTAAAAGGAAAATGAAGTGTT TAACTTTAATGAGTATTTAGACATTTGGTGATGTATGTTTCATAACTTTTCAAACATATATATATTTTTTCTTTACTTTT TCATTTTCCTCAACTCATGCAGTTTAAAGCTTTATGACATAAAGAAACAGGCAAAGAAGCTTTATAACATGTTTAGATTC ACTTTTAATCCTCCTAAAACCACTTTTCCACACACAAAACATAAGTTTCTCCTTATAATTAATTTTGGCCATAAAATCAA TCATAGAATTATTTCTAATCATGCTTATTCCAGAATCAATTCTTCATCAAACTTAGAAACCTACCAGGTTGAAAACCTAC ACTTACATTACATTAGTATATGTTGTTTCATTTTACAATAAAGGAAGATTATTCAGTCTTACAGCCATCAATGTTTGGTG TAGGTCTTGTACATTGATTGCATTTAAAACAGAATTAGTTGTTTTGCTACTCTGCTTTTTGTGGTGATATTAATTCCAGT CCATATTTTTTTTTTCATAAGACCTATACATTAGTACTAGTTTGTTATTGATTAATTGCAATTAAAAACGTAGACAATTT TATTTTAAACATTGGAAGAGATAAATTGGATTTCCTTTTCACTTTTGACAGGGTTGGATTACTGAGATGGCATCATACTT GAAATCCATAGATGGCAACCACTTGCTTGAAGCTGGTCTAGAAGGTTTCTACGGGCAGTCAAAGGCAGAGTCTAACCCTA ACTTCCAAGTTGGTACAGATTTTATTGCAAACAACCAAATCCCCGGCATTGATTTCGCAACACTACACTCCTACCCGGAT CAATGGTTTGACACTTTGACTTTTTAATTTCAATTCTTCATTTTTCTTTCAAAAATCATAATGACATGAAGTGAAATATA AATACATTAGTACTTTTTTTATGTGATGATAATGATGAATTAACTTTGTTTTCTTTCCCTTTGCAGGCTAACTAGTTCAA GTTATGAAGACCAAATGTCTTTCTTGAGTGGGTGGCTCAATGACCACATCCAAGATGCACAGAACATCCTTCACAAGCCA CTTCTATTTGCTGAGTTTGGGATTTCCACAAAAAATTTGGGTACCAACACAACTCCAAGGGACAGGTTCTTCAACACAGT ATATTCAGCAGTATATTCATCAGCAAGTGGTGGCGGAGCCGCTGTTGGCGGCTTATTTTGGCAACTTCTGGTTGAAGGAA TGGACTCATTTCGTGATGGTTATGAAGTGGTCTTAGGTGAGAGCCCCTCAACAGCTGCCGTGATTGCTCAACAGTCTCAG AAACTCAACCGAATTCGCAAGATGTACGCCAGATTGAGAAACATTGAGAAGTGGAATAAAGCAAAGGAAATTAGAAGCTC ACAAGGTGGAAAATGAGGGCCAAAATGACCTATTTCTGATACAGCGTTACACTTAGGTGTCCTACAAATACTTAATCTTA TAGATATAACTCTTATCAGCTTATAACAGCTGATAGAAATAAGAAATATACTATAATCTTATTCAGAAACAGATGAGCTC TTAACTTCTTATTTGGAAAACATTTCATCTACCTATATGTCGGCGAGTTAACTACTATACTAAAGATTTATGTCTAAACT CTGAAGATTAA
CDS sequence (LotjaGi1g1v0421000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGTTCTTTCTGGTTTTCTTAGTTTTTTGTGTGACACTGAAGCAGGGGATTGCAGATGATGATGGTGGGTTTGT GAAAGCAAGAGGAGTGCAGTTGATGCTGAATGGGAGCCCTTACTATGCTAATGGCTTCAATGCTTATTGGTTAATGTATT TTGCCTCTGATCCTTCTCAGAGAAACAAGGTTTCTTCAGCTTTTCAAGAGGCTGCAGATCATGGACTTAACATTGGCAGA ACTTGGGCTTTCAGTGATGGTGGATATAAACCCCTTCAATACTCTCCTGGGTCCTATAATGAGGAAATGTTCCAGGGGTT GGATTTCGTAGTAGCTGAAGCTGGAAAACATGGAATCAAGCTGATCTTGAGTTTGGTGAATAACTATGAGAATTTAGGAG GGAAGAAGCAGTACGTGGAGTGGGCAAGGAGTCAGGGCCAGTCCATAAATTCAGAAGATGATTTCTTCACAAATCCTGTT GTCAAGGGATACTACAAAAACCACATCAAGACTGTGCTTACAAGACATAACAGCCTCACTGGAGTTGCTTACAAGGATGA TCCGACTATAATGGCTTGGGAGCTTATGAATGAGATTAGATGTCCTTCAGATCAATCAGGAAATTCGGTTCAGGGTTGGA TTACTGAGATGGCATCATACTTGAAATCCATAGATGGCAACCACTTGCTTGAAGCTGGTCTAGAAGGTTTCTACGGGCAG TCAAAGGCAGAGTCTAACCCTAACTTCCAAGTTGGTACAGATTTTATTGCAAACAACCAAATCCCCGGCATTGATTTCGC AACACTACACTCCTACCCGGATCAATGGCTAACTAGTTCAAGTTATGAAGACCAAATGTCTTTCTTGAGTGGGTGGCTCA ATGACCACATCCAAGATGCACAGAACATCCTTCACAAGCCACTTCTATTTGCTGAGTTTGGGATTTCCACAAAAAATTTG GGTACCAACACAACTCCAAGGGACAGGTTCTTCAACACAGTATATTCAGCAGTATATTCATCAGCAAGTGGTGGCGGAGC CGCTGTTGGCGGCTTATTTTGGCAACTTCTGGTTGAAGGAATGGACTCATTTCGTGATGGTTATGAAGTGGTCTTAGGTG AGAGCCCCTCAACAGCTGCCGTGATTGCTCAACAGTCTCAGAAACTCAACCGAATTCGCAAGATGTACGCCAGATTGAGA AACATTGAGAAGTGGAATAAAGCAAAGGAAATTAGAAATTAA
Protein sequence (LotjaGi1g1v0421000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKFFLVFLVFCVTLKQGIADDDGGFVKARGVQLMLNGSPYYANGFNAYWLMYFASDPSQRNKVSSAFQEAADHGLNIGR TWAFSDGGYKPLQYSPGSYNEEMFQGLDFVVAEAGKHGIKLILSLVNNYENLGGKKQYVEWARSQGQSINSEDDFFTNPV VKGYYKNHIKTVLTRHNSLTGVAYKDDPTIMAWELMNEIRCPSDQSGNSVQGWITEMASYLKSIDGNHLLEAGLEGFYGQ SKAESNPNFQVGTDFIANNQIPGIDFATLHSYPDQWLTSSSYEDQMSFLSGWLNDHIQDAQNILHKPLLFAEFGISTKNL GTNTTPRDRFFNTVYSAVYSSASGGGAAVGGLFWQLLVEGMDSFRDGYEVVLGESPSTAAVIAQQSQKLNRIRKMYARLR NIEKWNKAKEIRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 2 | 411 | 410 | 1.2E-229 | – | |
| PANTHER | 2 | 411 | 410 | 1.2E-229 | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 413 | 393 | - | – | |
| Gene3D | 22 | 393 | 372 | 7.2E-141 | – | |
| SUPERFAMILY | 26 | 382 | 357 | 4.23E-81 | ||
| Pfam | 44 | 330 | 287 | 6.0E-13 | ||
| Coils | 382 | 402 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0421000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…