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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0421000 |
| Transcript ID | LotjaGi1g1v0421000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mannan endo-1,4-beta-mannosidase-like protein; TAIR: AT5G66460.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9FJZ3|MAN7_ARATH Mannan endo-1,4-beta-mannosidase 7; TrEMBL-Plants: tr|A0A072V2A7|A0A072V2A7_MEDTR Mannan endo-1,4-beta-mannosidase-like protein; Found in the gene: LotjaGi1g1v0421000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91488961..91492030) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGAAGTTCTTTCTGGTTTTCTTAGTTTTTTGTGTGACACTGAAGCAGGGGATTGCAGATGATGATGGTGGGTTTGT GAAAGCAAGAGGAGTGCAGTTGATGCTGAATGGGAGCCCTTACTATGCTAATGGCTTCAATGCTTATTGGTTAATGTATT TTGCCTCTGATCCTTCTCAGAGAAACAAGGTTTCTTCAGCTTTTCAAGAGGCTGCAGATCATGGACTTAACATTGGCAGA ACTTGGGCTTTCAGTGATGGTGGATATAAACCCCTTCAATACTCTCCTGGGTCCTATAATGAGGAAATGTTCCAGGTACG TCTTCAATCTTCAACTTTGTTTTCTCAATCTTAAATAAGAAATGATACTTACACCCTCAATCAATTAGTACAGACACTCC ACAAATACCTCAGTTTCAGTCTCTATTTCTCTGTGTTGTGTTTGTAGGGTGTCTTCACTTTAAAGATATCAACAAATCAA TTTCCATCTAAAATTTATGAAAATTGTAGAGAAAAACCTTCATATCGCACACCCCCAAATAGTTTTTGTTTTTCCTCTTT ATCTCAAGTTGTACACTTCTATTTTCATTAGGGGTTGGATTTCGTAGTAGCTGAAGCTGGAAAACATGGAATCAAGCTGA TCTTGAGTTTGGTGAATAACTATGAGAATTTAGGAGGGAAGAAGCAGTACGTGGAGTGGGCAAGGAGTCAGGGCCAGTCC ATAAATTCAGAAGATGATTTCTTCACAAATCCTGTTGTCAAGGGATACTACAAAAACCACATCAAGGTAAACACTTTATT TTCTCTTTATCTTGTTTTCCCTATTTCCATGAACATTATCCATGTTAAGGGTCAGGATCTAGATAGACAGTGTTACTCAG ATTTGATAGTAATTTTTTTAACTGAAGGGGGAGACGGAGAGATTATGAAATATGAGGTTAATTTCTTATATTCACTTGAC AGAGTTATCAATAATATTGAAGAGTGAATAAATCAATCACAAAAAAAAAAGCAGATGAGTGAAAGAATATCAATGGAAGA CATTAAATTTCTCTGGAACTTAAACTTAAATGTTCTAATATTCTAGTGGCTGGTCAAATATTTGATGAACCTAACCAATT ATTGTGGTTAAACTGCTCTGAGCATAAATGTTTCCACTTAATATGTTCAAACTTAGACCAAATAGATGCCATGAATGACA CTTGTAGAGTTGTGAGTAGTTTGAAAAGGTAAAAAAGAGATCTAACATTGGAGTTTTTATCTCCTTTACTATAGACTGTG CTTACAAGACATAACAGCCTCACTGGAGTTGCTTACAAGGATGATCCGACTATAATGGCTTGGGAGCTTATGAATGAGAT TAGATGTCCTTCAGATCAATCAGGAAATTCGGTTCAGGTAAACCATGCATCTTCAGCTACTCTAAATGAAATAATATATA CATGATACATCTAAGTCTTGAGATTATTTTGTCAAATGTATTTATGTTTGGTCATGTAAAATGAGAAGGTAATAAGAGAA TTATAAAAATAAAAATTACCTTGTTTTTTAACTTCGATGACCATCGAGGTGTTTAGACACCAAGAGAGAGAAAAGAAGAG AATAAAGATAAGTAATGAATGTGATATATGATATGATAAGAAATGAGAGATTAAAAGGAAAATGAAGTGTTTAACTTTAA TGAGTATTTAGACATTTGGTGATGTATGTTTCATAACTTTTCAAACATATATATATTTTTTCTTTACTTTTTCATTTTCC TCAACTCATGCAGTTTAAAGCTTTATGACATAAAGAAACAGGCAAAGAAGCTTTATAACATGTTTAGATTCACTTTTAAT CCTCCTAAAACCACTTTTCCACACACAAAACATAAGTTTCTCCTTATAATTAATTTTGGCCATAAAATCAATCATAGAAT TATTTCTAATCATGCTTATTCCAGAATCAATTCTTCATCAAACTTAGAAACCTACCAGGTTGAAAACCTACACTTACATT ACATTAGTATATGTTGTTTCATTTTACAATAAAGGAAGATTATTCAGTCTTACAGCCATCAATGTTTGGTGTAGGTCTTG TACATTGATTGCATTTAAAACAGAATTAGTTGTTTTGCTACTCTGCTTTTTGTGGTGATATTAATTCCAGTCCATATTTT TTTTTTCATAAGACCTATACATTAGTACTAGTTTGTTATTGATTAATTGCAATTAAAAACGTAGACAATTTTATTTTAAA CATTGGAAGAGATAAATTGGATTTCCTTTTCACTTTTGACAGGGTTGGATTACTGAGATGGCATCATACTTGAAATCCAT AGATGGCAACCACTTGCTTGAAGCTGGTCTAGAAGGTTTCTACGGGCAGTCAAAGGCAGAGTCTAACCCTAACTTCCAAG TTGGTACAGATTTTATTGCAAACAACCAAATCCCCGGCATTGATTTCGCAACACTACACTCCTACCCGGATCAATGGTTT GACACTTTGACTTTTTAATTTCAATTCTTCATTTTTCTTTCAAAAATCATAATGACATGAAGTGAAATATAAATACATTA GTACTTTTTTTATGTGATGATAATGATGAATTAACTTTGTTTTCTTTCCCTTTGCAGGCTAACTAGTTCAAGTTATGAAG ACCAAATGTCTTTCTTGAGTGGGTGGCTCAATGACCACATCCAAGATGCACAGAACATCCTTCACAAGCCACTTCTATTT GCTGAGTTTGGGATTTCCACAAAAAATTTGGGTACCAACACAACTCCAAGGGACAGGTTCTTCAACACAGTATATTCAGC AGTATATTCATCAGCAAGTGGTGGCGGAGCCGCTGTTGGCGGCTTATTTTGGCAACTTCTGGTTGAAGGAATGGACTCAT TTCGTGATGGTTATGAAGTGGTCTTAGGTGAGAGCCCCTCAACAGCTGCCGTGATTGCTCAACAGTCTCAGAAACTCAAC CGAATTCGCAAGATGTACGCCAGATTGAGAAACATTGAGAAGTGGAATAAAGCAAAGGAAATTAGAAGCTCACAAGGTGG AAAATGAGGGCCAAAATGACCTATTTCTGA
CDS sequence (LotjaGi1g1v0421000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAGTTCTTTCTGGTTTTCTTAGTTTTTTGTGTGACACTGAAGCAGGGGATTGCAGATGATGATGGTGGGTTTGT GAAAGCAAGAGGAGTGCAGTTGATGCTGAATGGGAGCCCTTACTATGCTAATGGCTTCAATGCTTATTGGTTAATGTATT TTGCCTCTGATCCTTCTCAGAGAAACAAGGTTTCTTCAGCTTTTCAAGAGGCTGCAGATCATGGACTTAACATTGGCAGA ACTTGGGCTTTCAGTGATGGTGGATATAAACCCCTTCAATACTCTCCTGGGTCCTATAATGAGGAAATGTTCCAGGGGTT GGATTTCGTAGTAGCTGAAGCTGGAAAACATGGAATCAAGCTGATCTTGAGTTTGGTGAATAACTATGAGAATTTAGGAG GGAAGAAGCAGTACGTGGAGTGGGCAAGGAGTCAGGGCCAGTCCATAAATTCAGAAGATGATTTCTTCACAAATCCTGTT ACTGTGCTTACAAGACATAACAGCCTCACTGGAGTTGCTTACAAGGATGATCCGACTATAATGGCTTGGGAGCTTATGAA TGAGATTAGATGTCCTTCAGATCAATCAGGAAATTCGGTTCAGGGTTGGATTACTGAGATGGCATCATACTTGAAATCCA TAGATGGCAACCACTTGCTTGAAGCTGGTCTAGAAGGTTTCTACGGGCAGTCAAAGGCAGAGTCTAACCCTAACTTCCAA GTTGGTACAGATTTTATTGCAAACAACCAAATCCCCGGCATTGATTTCGCAACACTACACTCCTACCCGGATCAATGGCT AACTAGTTCAAGTTATGAAGACCAAATGTCTTTCTTGAGTGGGTGGCTCAATGACCACATCCAAGATGCACAGAACATCC TTCACAAGCCACTTCTATTTGCTGAGTTTGGGATTTCCACAAAAAATTTGGGTACCAACACAACTCCAAGGGACAGGTTC TTCAACACAGTATATTCAGCAGTATATTCATCAGCAAGTGGTGGCGGAGCCGCTGTTGGCGGCTTATTTTGGCAACTTCT GGTTGAAGGAATGGACTCATTTCGTGATGGTTATGAAGTGGTCTTAGGTGAGAGCCCCTCAACAGCTGCCGTGATTGCTC AACAGTCTCAGAAACTCAACCGAATTCGCAAGATGTACGCCAGATTGAGAAACATTGAGAAGTGGAATAAAGCAAAGGAA ATTAGAAGCTCACAAGGTGGAAAATGA
Protein sequence (LotjaGi1g1v0421000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKFFLVFLVFCVTLKQGIADDDGGFVKARGVQLMLNGSPYYANGFNAYWLMYFASDPSQRNKVSSAFQEAADHGLNIGR TWAFSDGGYKPLQYSPGSYNEEMFQGLDFVVAEAGKHGIKLILSLVNNYENLGGKKQYVEWARSQGQSINSEDDFFTNPV TVLTRHNSLTGVAYKDDPTIMAWELMNEIRCPSDQSGNSVQGWITEMASYLKSIDGNHLLEAGLEGFYGQSKAESNPNFQ VGTDFIANNQIPGIDFATLHSYPDQWLTSSSYEDQMSFLSGWLNDHIQDAQNILHKPLLFAEFGISTKNLGTNTTPRDRF FNTVYSAVYSSASGGGAAVGGLFWQLLVEGMDSFRDGYEVVLGESPSTAAVIAQQSQKLNRIRKMYARLRNIEKWNKAKE IRSSQGGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 2 | 402 | 401 | 2.9E-216 | – | |
| PANTHER | 2 | 402 | 401 | 2.9E-216 | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 408 | 388 | - | – | |
| Gene3D | 22 | 383 | 362 | 4.6E-130 | – | |
| SUPERFAMILY | 26 | 372 | 347 | 7.5E-75 | ||
| Pfam | 44 | 320 | 277 | 1.3E-13 | ||
| Coils | 372 | 392 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0421000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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