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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0422000 |
| Transcript ID | LotjaGi1g1v0422000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G27660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110; TrEMBL-Plants: tr|A0A1J7I8A0|A0A1J7I8A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91597389..91600795) extracted from Lotus japonicus Gifu genome v1.2.
TGGAAATGAAATACTCATCATATCTCTCTCTTTCTTCCTTCCTTTTCAAGGATACTTTGAAAGAAAGAGTAAAGAGAAAA ACTGAGAAAAGTGATGGGAAAAGAAAAGCAGCTAGCAAGGTCACCTGGAACTGTGTTCCTTTGAATAGTACTGGCAGATT CCCTTCCTTCCGTTCACCAAAGCAAAGCTTGCTCTAGCTATTTATAATTTTAATCACTAAGTACTTGATCATCTTGGGAT TTTCAATCTTATTCCTTTCCCTTTCCCTTTAAGACCATATAGTAAATTCATATTTCATTATGGAATCTACCAACAACAAT CTCCAATATCATCATCCTCAACACCCTCTTGAAGCTTCTTCTTTATCACCCCCATCCTCCTATGCTCATGTTGGCGGAAC CAACCATTCTTGGACGCCAAATATCACTTTGTAAGTCCCTTCTAAAACTAATTTCATGTATCTTCTTAGACTTTAATTTC TTAAGCATCATGTATATGTGTATCTAGCTGATTTTATATACTTCACTGTCCATTTTCTTAGCCTTGATTCTCATGTTAAT TATCATAAATGCATTGTACTATCTTTTCTGTGTTTGGAACATGCACATGTACTATTTGTACTAGACTAGCTAGGGCTTAA ATTAAGTGGACTCCTATATGGTATCTTTAAATTCTAATTGTGATTTACATATATAGGAATGCAGGTAGTAACTTCAATCA AAACTTTCAAGAAGCTGATCCCACTTCAAGAGAATCTATGATCCAAGATTTAGGTTATCATTACCAGTGGGCAAGTAAGG AAGAGATCTCAATTTTCCCCCCCAAATTCAGTGAAATACTAAACACTCCTTCCACTGCACAGATGAAGAGTGAGCAGAGA GATATGAATGAGAAAAAGCTTTTGCACAGTGCTCAAAGTTATTATCCCAATTTGAGCGGTACAACAAGTAGAGGGAACTT TAGCCAGATTTACCCAAGTATAAGTATATCACCCACTTATTCCACTTCAGTTTCAAGCTCTTTCGGTATGAGCACGCAGT CCTTAGATCTATTAACACCAACAGGATCATTCAGTGCGGGTTTGAGCCAGCATTCACAGGATGACCATGATCTTGGTGCA TTCAGTGATCACAACCTTTCTTTTAGTCTTCATCATATGCAGCACCCTAATCACAGGTCCTCGTGTAGTAACACTACTAA TATTGTGAGTATTTATTCCTTCTTTAATTTATCTTTTAATTTTCATTTCTCAATTAAGGGCATGTTAATTTGGTTTTAGG ATTTGCCCAGAATTCAAGACAGAACGTTTATTTAGAATCTAAGACTTGTAAGTTGTAACTTCTAACCAGAGTAGTAGTGA GTCTACAACATGGAAAAAATGAAACATGCAAATTATAGTTGAGTTATAGATCTAAGGACTGCGTGCTCATACCGAATGAA ACATGGAAAAAATGAAACATGCAAATGAAACATGAACAGCCTCAAATATAAGTTGACTTGCCAAAGGATCTGGAAAAAAT AAAAATAAGAAAGCAGTTACCCTTTACTGTAATTTTTTTTTTATTAACTTGTAAGAAAGAAGAATCAGCCTTCTCTTTGT TGCCACATTAGGGATGCTTTTTACATGGAACACATATATATCTTTAATCAGAATTTATCATCTTTTTCCTTTTCTTTTGG CTTCTTTTTTTCATTGACCAGCTAGCGGGCCATGCCACTTCAATTATTATTGGACTAATCTTTACTCATTTTATATAATT AGCAGCAGCCTTCTTCACACTTCACCAATGGCGGAGCAGAAGCTAAGAGACCCGGCACTTTGATGGAGTCCATGGTTTGT GAATCTCAAACAGCGTCGAAGAAATCACGATTGGATTCATCACGCCCTCCATGCCCGCCACCTTTGAAGGTTAGGAAAGA AAAATTAGGAGATAGGATTGCAGCTCTTCAGCAGTTGGTTGCTCCTTTTGGCAAGGTAACCAGATGAGATGACAATACTT TCACACACTTATGGACATGGTTGTTTAATTTGTGGAACTTAAATTAATTAATATTGTGAATTAATTAATTTTTGCAGACG GACACAGCATCTGTACTCATGGAAGCTATTGGATACATCAAATTCCTTCAAGGCCAAGTCGAGGTATATATATTTATATA ACTTGTATAAGTTTCCACCATGTGACAATGTCATTAATCATTTCTTCATTGATTCTAACTTAAGTCTTCATTCATGGTAC AGACACTGAGTGTTCCATACATGAAGAAGCCATCACAGAACCACACTAACAGAACCATGCAAGGGGTAAGTATATAAGGA TTCTATTACTATTAGCTAGAGAAATGCTACCAAACATGCACACATTCACAATTTCTCGTTTAACACTAGATGATCGTGCG CACACGCTCACTCTTGTTTAACATGGCTTTAATTAGGACTGAAGAATATGTAATATATGTTGTCCAACAAGTTAAAGTTT TTGGATCCGTCATGTATGAAGCAATAACATATATAATAGTGCACAATGCATATTGAGCTAGCATGGGTTTGTCATTGAAA CTGATACTTCTTATTCATATTGACAGGGTACAGCCACAGACGAAGCAGATGGGGAAACAACGCAAGATCTTAGAAGCCGA GGCCTCTGTCTCGTGCCATTGTCGTGCATGTCGTACATAGCAGGCGATTGCATCATCAGTGAGGTGTGGCAACAACCAAA CTTTGGTAGAGCGACTTAGTACTGATCAACCTTTTCCAATCAAATGAAAGTTAAGCTGAACATGATCTCGGAGAAAAGAA GGAGAGAATTCCGAGACCATGTTAGGAGCTAAAAACATGTCCCTTGTTATTTTAATTATTAGTTTAATGGACCAAACTTG GTCTTCTATCACAAGACCCAAGGATAGCCAAGTTTGATCCATTAAATTAAAACATATTGTACCATTAACTTTTACTTTCT TTTTTTGGCAGCCATTTTATTTCAGGTTACCTAACATGATTTTAAGTGTCTGGCTATGTCTAACTTGGAAAAAAAACATG TTAATAAGTTAAAAATGACTCATCTACAAATTAATTTAAGCACATAAGTATTATATTTCAAATAACTTACTGAATTAGTC GGTAAAAACATGGTTTGTGGATGAATAGATTTTTAACACGATCCACCATAAAACAATAATTTAAATTTAATTCTAGATTC ATAGGTTAGAACAATCAAGTAAATGATAAATTATGGATAAAACAAAATAGATATCATTGTTAGAGTTGAGTCAGCATTAA TAGTGATGAGTCATCAAGATTAGTGATGTGTCATTAGGTTGGTTATAACTAACTGAGATTAGTTATAACTAATGAGTGTT ATTGTAAGATGTATAAATAGATTGTGTATTGTTGAATGAGAATCAGA
CDS sequence (LotjaGi1g1v0422000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTACCAACAACAATCTCCAATATCATCATCCTCAACACCCTCTTGAAGCTTCTTCTTTATCACCCCCATCCTC CTATGCTCATGTTGGCGGAACCAACCATTCTTGGACGCCAAATATCACTTTGAATGCAGGTAGTAACTTCAATCAAAACT TTCAAGAAGCTGATCCCACTTCAAGAGAATCTATGATCCAAGATTTAGGTTATCATTACCAGTGGGCAAGTAAGGAAGAG ATCTCAATTTTCCCCCCCAAATTCAGTGAAATACTAAACACTCCTTCCACTGCACAGATGAAGAGTGAGCAGAGAGATAT GAATGAGAAAAAGCTTTTGCACAGTGCTCAAAGTTATTATCCCAATTTGAGCGGTACAACAAGTAGAGGGAACTTTAGCC AGATTTACCCAAGTATAAGTATATCACCCACTTATTCCACTTCAGTTTCAAGCTCTTTCGGTATGAGCACGCAGTCCTTA GATCTATTAACACCAACAGGATCATTCAGTGCGGGTTTGAGCCAGCATTCACAGGATGACCATGATCTTGGTGCATTCAG TGATCACAACCTTTCTTTTAGTCTTCATCATATGCAGCACCCTAATCACAGGTCCTCGTGTAGTAACACTACTAATATTC AGCAGCCTTCTTCACACTTCACCAATGGCGGAGCAGAAGCTAAGAGACCCGGCACTTTGATGGAGTCCATGGTTTGTGAA TCTCAAACAGCGTCGAAGAAATCACGATTGGATTCATCACGCCCTCCATGCCCGCCACCTTTGAAGGTTAGGAAAGAAAA ATTAGGAGATAGGATTGCAGCTCTTCAGCAGTTGGTTGCTCCTTTTGGCAAGACGGACACAGCATCTGTACTCATGGAAG CTATTGGATACATCAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCATACATGAAGAAGCCATCACAGAACCAC ACTAACAGAACCATGCAAGGGGGTACAGCCACAGACGAAGCAGATGGGGAAACAACGCAAGATCTTAGAAGCCGAGGCCT CTGTCTCGTGCCATTGTCGTGCATGTCGTACATAGCAGGCGATTGCATCATCAGTGAGGTGTGGCAACAACCAAACTTTG GTAGAGCGACTTAG
Protein sequence (LotjaGi1g1v0422000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESTNNNLQYHHPQHPLEASSLSPPSSYAHVGGTNHSWTPNITLNAGSNFNQNFQEADPTSRESMIQDLGYHYQWASKEE ISIFPPKFSEILNTPSTAQMKSEQRDMNEKKLLHSAQSYYPNLSGTTSRGNFSQIYPSISISPTYSTSVSSSFGMSTQSL DLLTPTGSFSAGLSQHSQDDHDLGAFSDHNLSFSLHHMQHPNHRSSCSNTTNIQQPSSHFTNGGAEAKRPGTLMESMVCE SQTASKKSRLDSSRPPCPPPLKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKKPSQNH TNRTMQGGTATDEADGETTQDLRSRGLCLVPLSCMSYIAGDCIISEVWQQPNFGRAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 1 | 372 | 372 | 5.5E-74 | – | |
| PANTHER | 1 | 372 | 372 | 5.5E-74 | – | |
| MobiDBLite | 199 | 224 | 26 | - | – | |
| MobiDBLite | 199 | 222 | 24 | - | – | |
| MobiDBLite | 240 | 259 | 20 | - | – | |
| ProSiteProfiles | 252 | 301 | 50 | 11.611 | ||
| CDD | 262 | 306 | 45 | 3.27022E-5 | ||
| Gene3D | 262 | 315 | 54 | 1.3E-5 | ||
| SUPERFAMILY | 262 | 316 | 55 | 8.9E-11 | ||
| MobiDBLite | 314 | 335 | 22 | - | – | |
| MobiDBLite | 314 | 338 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0422000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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