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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0422000 |
Transcript ID | LotjaGi1g1v0422000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT1G27660.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110; TrEMBL-Plants: tr|A0A1J7I8A0|A0A1J7I8A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0422000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91597389..91600795) extracted from Lotus japonicus Gifu genome v1.2.
TGGAAATGAAATACTCATCATATCTCTCTCTTTCTTCCTTCCTTTTCAAGGATACTTTGAAAGAAAGAGTAAAGAGAAAA ACTGAGAAAAGTGATGGGAAAAGAAAAGCAGCTAGCAAGGTCACCTGGAACTGTGTTCCTTTGAATAGTACTGGCAGATT CCCTTCCTTCCGTTCACCAAAGCAAAGCTTGCTCTAGCTATTTATAATTTTAATCACTAAGTACTTGATCATCTTGGGAT TTTCAATCTTATTCCTTTCCCTTTCCCTTTAAGACCATATAGTAAATTCATATTTCATTATGGAATCTACCAACAACAAT CTCCAATATCATCATCCTCAACACCCTCTTGAAGCTTCTTCTTTATCACCCCCATCCTCCTATGCTCATGTTGGCGGAAC CAACCATTCTTGGACGCCAAATATCACTTTGTAAGTCCCTTCTAAAACTAATTTCATGTATCTTCTTAGACTTTAATTTC TTAAGCATCATGTATATGTGTATCTAGCTGATTTTATATACTTCACTGTCCATTTTCTTAGCCTTGATTCTCATGTTAAT TATCATAAATGCATTGTACTATCTTTTCTGTGTTTGGAACATGCACATGTACTATTTGTACTAGACTAGCTAGGGCTTAA ATTAAGTGGACTCCTATATGGTATCTTTAAATTCTAATTGTGATTTACATATATAGGAATGCAGGTAGTAACTTCAATCA AAACTTTCAAGAAGCTGATCCCACTTCAAGAGAATCTATGATCCAAGATTTAGGTTATCATTACCAGTGGGCAAGTAAGG AAGAGATCTCAATTTTCCCCCCCAAATTCAGTGAAATACTAAACACTCCTTCCACTGCACAGATGAAGAGTGAGCAGAGA GATATGAATGAGAAAAAGCTTTTGCACAGTGCTCAAAGTTATTATCCCAATTTGAGCGGTACAACAAGTAGAGGGAACTT TAGCCAGATTTACCCAAGTATAAGTATATCACCCACTTATTCCACTTCAGTTTCAAGCTCTTTCGGTATGAGCACGCAGT CCTTAGATCTATTAACACCAACAGGATCATTCAGTGCGGGTTTGAGCCAGCATTCACAGGATGACCATGATCTTGGTGCA TTCAGTGATCACAACCTTTCTTTTAGTCTTCATCATATGCAGCACCCTAATCACAGGTCCTCGTGTAGTAACACTACTAA TATTGTGAGTATTTATTCCTTCTTTAATTTATCTTTTAATTTTCATTTCTCAATTAAGGGCATGTTAATTTGGTTTTAGG ATTTGCCCAGAATTCAAGACAGAACGTTTATTTAGAATCTAAGACTTGTAAGTTGTAACTTCTAACCAGAGTAGTAGTGA GTCTACAACATGGAAAAAATGAAACATGCAAATTATAGTTGAGTTATAGATCTAAGGACTGCGTGCTCATACCGAATGAA ACATGGAAAAAATGAAACATGCAAATGAAACATGAACAGCCTCAAATATAAGTTGACTTGCCAAAGGATCTGGAAAAAAT AAAAATAAGAAAGCAGTTACCCTTTACTGTAATTTTTTTTTTATTAACTTGTAAGAAAGAAGAATCAGCCTTCTCTTTGT TGCCACATTAGGGATGCTTTTTACATGGAACACATATATATCTTTAATCAGAATTTATCATCTTTTTCCTTTTCTTTTGG CTTCTTTTTTTCATTGACCAGCTAGCGGGCCATGCCACTTCAATTATTATTGGACTAATCTTTACTCATTTTATATAATT AGCAGCAGCCTTCTTCACACTTCACCAATGGCGGAGCAGAAGCTAAGAGACCCGGCACTTTGATGGAGTCCATGGTTTGT GAATCTCAAACAGCGTCGAAGAAATCACGATTGGATTCATCACGCCCTCCATGCCCGCCACCTTTGAAGGTTAGGAAAGA AAAATTAGGAGATAGGATTGCAGCTCTTCAGCAGTTGGTTGCTCCTTTTGGCAAGGTAACCAGATGAGATGACAATACTT TCACACACTTATGGACATGGTTGTTTAATTTGTGGAACTTAAATTAATTAATATTGTGAATTAATTAATTTTTGCAGACG GACACAGCATCTGTACTCATGGAAGCTATTGGATACATCAAATTCCTTCAAGGCCAAGTCGAGGTATATATATTTATATA ACTTGTATAAGTTTCCACCATGTGACAATGTCATTAATCATTTCTTCATTGATTCTAACTTAAGTCTTCATTCATGGTAC AGACACTGAGTGTTCCATACATGAAGAAGCCATCACAGAACCACACTAACAGAACCATGCAAGGGGTAAGTATATAAGGA TTCTATTACTATTAGCTAGAGAAATGCTACCAAACATGCACACATTCACAATTTCTCGTTTAACACTAGATGATCGTGCG CACACGCTCACTCTTGTTTAACATGGCTTTAATTAGGACTGAAGAATATGTAATATATGTTGTCCAACAAGTTAAAGTTT TTGGATCCGTCATGTATGAAGCAATAACATATATAATAGTGCACAATGCATATTGAGCTAGCATGGGTTTGTCATTGAAA CTGATACTTCTTATTCATATTGACAGGGTACAGCCACAGACGAAGCAGATGGGGAAACAACGCAAGATCTTAGAAGCCGA GGCCTCTGTCTCGTGCCATTGTCGTGCATGTCGTACATAGCAGGCGATTGCATCATCAGTGAGGTGTGGCAACAACCAAA CTTTGGTAGAGCGACTTAGTACTGATCAACCTTTTCCAATCAAATGAAAGTTAAGCTGAACATGATCTCGGAGAAAAGAA GGAGAGAATTCCGAGACCATGTTAGGAGCTAAAAACATGTCCCTTGTTATTTTAATTATTAGTTTAATGGACCAAACTTG GTCTTCTATCACAAGACCCAAGGATAGCCAAGTTTGATCCATTAAATTAAAACATATTGTACCATTAACTTTTACTTTCT TTTTTTGGCAGCCATTTTATTTCAGGTTACCTAACATGATTTTAAGTGTCTGGCTATGTCTAACTTGGAAAAAAAACATG TTAATAAGTTAAAAATGACTCATCTACAAATTAATTTAAGCACATAAGTATTATATTTCAAATAACTTACTGAATTAGTC GGTAAAAACATGGTTTGTGGATGAATAGATTTTTAACACGATCCACCATAAAACAATAATTTAAATTTAATTCTAGATTC ATAGGTTAGAACAATCAAGTAAATGATAAATTATGGATAAAACAAAATAGATATCATTGTTAGAGTTGAGTCAGCATTAA TAGTGATGAGTCATCAAGATTAGTGATGTGTCATTAGGTTGGTTATAACTAACTGAGATTAGTTATAACTAATGAGTGTT ATTGTAAGATGTATAAATAGATTGTGTATTGTTGAATGAGAATCAGA
CDS sequence (LotjaGi1g1v0422000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTACCAACAACAATCTCCAATATCATCATCCTCAACACCCTCTTGAAGCTTCTTCTTTATCACCCCCATCCTC CTATGCTCATGTTGGCGGAACCAACCATTCTTGGACGCCAAATATCACTTTGAATGCAGGTAGTAACTTCAATCAAAACT TTCAAGAAGCTGATCCCACTTCAAGAGAATCTATGATCCAAGATTTAGGTTATCATTACCAGTGGGCAAGTAAGGAAGAG ATCTCAATTTTCCCCCCCAAATTCAGTGAAATACTAAACACTCCTTCCACTGCACAGATGAAGAGTGAGCAGAGAGATAT GAATGAGAAAAAGCTTTTGCACAGTGCTCAAAGTTATTATCCCAATTTGAGCGGTACAACAAGTAGAGGGAACTTTAGCC AGATTTACCCAAGTATAAGTATATCACCCACTTATTCCACTTCAGTTTCAAGCTCTTTCGGTATGAGCACGCAGTCCTTA GATCTATTAACACCAACAGGATCATTCAGTGCGGGTTTGAGCCAGCATTCACAGGATGACCATGATCTTGGTGCATTCAG TGATCACAACCTTTCTTTTAGTCTTCATCATATGCAGCACCCTAATCACAGGTCCTCGTGTAGTAACACTACTAATATTC AGCCTTCTTCACACTTCACCAATGGCGGAGCAGAAGCTAAGAGACCCGGCACTTTGATGGAGTCCATGGTTTGTGAATCT CAAACAGCGTCGAAGAAATCACGATTGGATTCATCACGCCCTCCATGCCCGCCACCTTTGAAGGTTAGGAAAGAAAAATT AGGAGATAGGATTGCAGCTCTTCAGCAGTTGGTTGCTCCTTTTGGCAAGACGGACACAGCATCTGTACTCATGGAAGCTA TTGGATACATCAAATTCCTTCAAGGCCAAGTCGAGACACTGAGTGTTCCATACATGAAGAAGCCATCACAGAACCACACT AACAGAACCATGCAAGGGGGTACAGCCACAGACGAAGCAGATGGGGAAACAACGCAAGATCTTAGAAGCCGAGGCCTCTG TCTCGTGCCATTGTCGTGCATGTCGTACATAGCAGGCGATTGCATCATCAGTGAGGTGTGGCAACAACCAAACTTTGGTA GAGCGACTTAG
Protein sequence (LotjaGi1g1v0422000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESTNNNLQYHHPQHPLEASSLSPPSSYAHVGGTNHSWTPNITLNAGSNFNQNFQEADPTSRESMIQDLGYHYQWASKEE ISIFPPKFSEILNTPSTAQMKSEQRDMNEKKLLHSAQSYYPNLSGTTSRGNFSQIYPSISISPTYSTSVSSSFGMSTQSL DLLTPTGSFSAGLSQHSQDDHDLGAFSDHNLSFSLHHMQHPNHRSSCSNTTNIQPSSHFTNGGAEAKRPGTLMESMVCES QTASKKSRLDSSRPPCPPPLKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKKPSQNHT NRTMQGGTATDEADGETTQDLRSRGLCLVPLSCMSYIAGDCIISEVWQQPNFGRAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 34 | 34 | - | – | |
PANTHER | 1 | 371 | 371 | 2.1E-74 | – | |
PANTHER | 1 | 371 | 371 | 2.1E-74 | – | |
MobiDBLite | 236 | 258 | 23 | - | – | |
ProSiteProfiles | 251 | 300 | 50 | 11.611 | ||
SUPERFAMILY | 261 | 315 | 55 | 8.9E-11 | ||
CDD | 261 | 305 | 45 | 3.26118E-5 | ||
Gene3D | 261 | 314 | 54 | 1.3E-5 | ||
MobiDBLite | 313 | 334 | 22 | - | – | |
MobiDBLite | 313 | 337 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0422000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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