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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424600 |
| Transcript ID | LotjaGi1g1v0424600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein shi related sequence 1; TAIR: AT1G75520.1 SHI-related sequence 5; Swiss-Prot: sp|Q9LQZ5|SRS5_ARATH Protein SHI RELATED SEQUENCE 5; TrEMBL-Plants: tr|V7AQV4|V7AQV4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0424600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91917717..91919366) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAAACTGTGAGAAAAACTGTAGAGAAGAAGTAGATAGATTTTCATGTTCCCCACACACACTCTCTCTCTCCCTCTCA CACAAACTTTCAGTGTTTCTGTGTGTGAGTGAGCTTTGCACAGCTAGCAATCTCGATACAGTATTACTGTACAGTGCAAA AGTCCAAGTAAACTAGAGATTCAGCAAGAGATTGGAGATCCCAGAGTTCCATAAAATTGAGATCACTTGAACAGTAGAGT GAGTGGAAACTGCAGTTTCCATGGCGGCGTTGCAGAGATTCTAATTCCGTGCCATTATTCAGCAACTTCCATTCAAAGTT CAAACCTAGTAGTGTTACTACCCCTTCGCGAAGGTTCTATATGCTATATATGGATATTACTATCGGTGAATTGTGGATCG TTTCAGCTTTTGGGTGCAAGTGCAATAGATGGCTGGTTTGTTCTCTCTAGGCCCACAAAACAAGTTAGAAGTTGAAAAAG AAGAGAGTAGCGTGTTGTGGTTCAGGAATGAAGAGATCTACAATAACAACAACAAGGGTTTTGAGATATGGCCACCGCAG CAGAATTTGTTGAACTACAACAACGAGGAAATCACGTCCTTGTGTGAAGCTGCTTCTAGGAGAAGATTTGGAATGATGAT GAGTAGGCGTGGTGGTGGTGGTGGAGGCGTGAACTGTCAGGACTGTGGGAACCAAGCGAAGAAAGACTGTGCACATCTGA GATGCAGAACTTGCTGTAAGACCCGAGGGTTTCCGTGCCAAACGCATGTCAAGAGCACTTGGATTCCCGCTGCCAAACGC CGTGAACGACAGTTATTGCGCGGCGGAGAAGATAACAATGTTCCTAAACGTCATTCTTCAAATCCTCCATCCTCCACCAC AGGTAATAAATATTTTAATAAATGATAAAGTAAACCACTATACAACTTGTGCCTGTCTCACTCTCTCGTCTTTTCCATAT CCAATCACTGTTTTTAAGTAAACTGACGATACTTTTGGTGTTATTATATATTCTTCCATTACATGCTATATGCTATATAC CATTTTTTTCTAATTTTAATTTGTTGGTTATGACTTATGATTAAATAGGGTTGGAAGCGGGGCAATTCCCTACTGAAGTG AACTCTACGGCGGTGTTTCGGTGTGTGAGAGTGAGCGGAGTGGAGTGTGCGGAGGAGCGGTGCGCGTATCAAACGTGTGT CAACATCGGAGGGCATGTTTTCAAAGGGATTCTCTATGATCAAGGTCCTGAAAGTTCTTACACTACTAGTACTGTAGTTG GTGAGGGTTCCTCCGCTGGTGGTGGTGGAGCTAAACAACTTGGCTTCGTAACTGCCACTAACACGGCCACAACCAGCGGA AACCCCTATTTTGACCCTTCTCTATACCCGGCTCCCTTAAATGCTTTCATGGCTGGTACGCATTTTTTCCCACCCTCAAG ATCCTAAAGACCTGTCTCTCTCTGTATATTATACAAAGGGTTTTGATTCATTTTCTCTTGATGGTGCTGGTGTATTTCCG GTGTGAACAAAGCATGTTTCATTTGAACAATAGATGAAACTTTATCACCCTTTTCTCATTTGAACAATATTTGGACATTG GACACACATAAATATTATTGCAAATGTAACCTAGATGTTAACACATTCGT
CDS sequence (LotjaGi1g1v0424600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTTTGTTCTCTCTAGGCCCACAAAACAAGTTAGAAGTTGAAAAAGAAGAGAGTAGCGTGTTGTGGTTCAGGAA TGAAGAGATCTACAATAACAACAACAAGGGTTTTGAGATATGGCCACCGCAGCAGAATTTGTTGAACTACAACAACGAGG AAATCACGTCCTTGTGTGAAGCTGCTTCTAGGAGAAGATTTGGAATGATGATGAGTAGGCGTGGTGGTGGTGGTGGAGGC GTGAACTGTCAGGACTGTGGGAACCAAGCGAAGAAAGACTGTGCACATCTGAGATGCAGAACTTGCTGTAAGACCCGAGG GTTTCCGTGCCAAACGCATGTCAAGAGCACTTGGATTCCCGCTGCCAAACGCCGTGAACGACAGTTATTGCGCGGCGGAG AAGATAACAATGTTCCTAAACGTCATTCTTCAAATCCTCCATCCTCCACCACAGGGTTGGAAGCGGGGCAATTCCCTACT GAAGTGAACTCTACGGCGGTGTTTCGGTGTGTGAGAGTGAGCGGAGTGGAGTGTGCGGAGGAGCGGTGCGCGTATCAAAC GTGTGTCAACATCGGAGGGCATGTTTTCAAAGGGATTCTCTATGATCAAGGTCCTGAAAGTTCTTACACTACTAGTACTG TAGTTGGTGAGGGTTCCTCCGCTGGTGGTGGTGGAGCTAAACAACTTGGCTTCGTAACTGCCACTAACACGGCCACAACC AGCGGAAACCCCTATTTTGACCCTTCTCTATACCCGGCTCCCTTAAATGCTTTCATGGCTGGTACGCATTTTTTCCCACC CTCAAGATCCTAA
Protein sequence (LotjaGi1g1v0424600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLFSLGPQNKLEVEKEESSVLWFRNEEIYNNNNKGFEIWPPQQNLLNYNNEEITSLCEAASRRRFGMMMSRRGGGGGG VNCQDCGNQAKKDCAHLRCRTCCKTRGFPCQTHVKSTWIPAAKRRERQLLRGGEDNNVPKRHSSNPPSSTTGLEAGQFPT EVNSTAVFRCVRVSGVECAEERCAYQTCVNIGGHVFKGILYDQGPESSYTTSTVVGEGSSAGGGGAKQLGFVTATNTATT SGNPYFDPSLYPAPLNAFMAGTHFFPPSRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 1.3E-90 | – | |
| PANTHER | 1 | 266 | 266 | 1.3E-90 | ||
| Pfam | 80 | 206 | 127 | 3.8E-51 | – | |
| TIGRFAM | 82 | 124 | 43 | 9.8E-26 | ||
| MobiDBLite | 130 | 156 | 27 | - | – | |
| MobiDBLite | 139 | 156 | 18 | - | – | |
| TIGRFAM | 157 | 205 | 49 | 2.9E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0424600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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