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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424700 |
| Transcript ID | LotjaGi1g1v0424700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-type anion channel; TAIR: AT1G62280.1 SLAC1 homologue 1; Swiss-Prot: sp|Q5E930|SLAH1_ARATH S-type anion channel SLAH1; TrEMBL-Plants: tr|A0A072VDH8|A0A072VDH8_MEDTR C4-dicarboxylate transporter/malic acid protein; Found in the gene: LotjaGi1g1v0424700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91927378..91930361) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAGACTTTTAATATGTCCACTTGTATACCCAGCCTCCCGATTCTGGTCTTACCTTCCCCTATAAAATCCCTTGCAT GTGGACTAGGAAAAATGCACACACATCTACCCTTCCCTGTATACAAGTTCGATACATGGCAGCTCAAGATCCTAAACCCG AGATTGCGCTTGTCATAGACAACACAGTCTCCACCATTATTTCCCGCGAACCACCCTCGTTTATAGTTGCGAGGCGCTTG TTAGCGTCCCTAAACTCTGTACTAACAAAATTGCATGCAGGTTATTTCAGAATAAGTCTCTCCCTCGGTGGCCAAGCTTT GTTATGGAAGACACTAATCGGACCAACACACGACAAAAGCACCCTGCGACACGTGGTTCACATGGTTCCTTCCTCCGCTT TCCTCGTACTATGGTCTCTGGCTCTCTTCACACTCGCATTGCTCTCTCTTCTCTACCTTCTAAGGTGCTTGTTTCACTTC AATATGGTAAAGGCAGAGTTCTTGCACCATGTCGGGGTTAACTACCTCTTCGCTCCGTGGATCTCGTGGTTTCTCTTACT CCAATCCGCGCCATTCGTGGCGCCGAAAACGGCCACCTATTTGGTTCTTTGGTGGGTGTTTGCGGTGCCGGTTGTGGTGC TGGACGTGAAAATCTACGGTCAGTGGTTCACGAAAGGGAAGAGGTTTCTGTCCACCGCGGCAAACCCAACAAGCCAGTTG TCAGTGATAGGCAACTTGGTGGGGGCGCAAGCCGCGGCGCACATGGGTTGGAAAGAGAGTGCGGTGTGCTTATTCTCGCT AGGGATGGTGCATTACTTGGTGTTGTTTGTCACGCTTTATCAGCGGTTGTCTGGTGGAAATCGCCTTCCGGTGTTGTTGA GGCCGGTTTTCTTCTTGTTCTTTGCGGCGCCCGGCGTGGCGAGCTTGGCTTGGGGATCCATTGTTGGAGGCTTTGATACC CTTTCCAAGATGCTCTTCTTTCTGTCGCTTTTCCTCTTCATGTCACTGGTAATTCATTTTCTATGTTGCCTCAATTGTTT TTTAAATGATTATATTTTATTGGACAAAATTGTGGTTGTTTTCATGCATGCAACTGTACAAGTCTTTTCTTCAAGAGGAC GACAAGGATGGATGTAGATGGCTAGATGCTCGGTTGTATCTCATTTTCTATTCTACTAATGAGACTTTTTTGGTTTTCGG GGATATTTCACGATCGACAGTCATAAGGCTAATTTTTTTAAGTTTCAAGATCACATTAAGCAGCTAATATGAGATCGTGT CATGAAGGGAAAAAGAATTTAAAAATCACTAATATATTTATAAATATCATATTAAAATATTATTAATTAATATTTGAATA ATTATATCGTCACAACTCATTTTTCAGGTGTGAAGAGGTGGAAGAGGGGAGAGATAAGAAGAAAGAAGAGAGAAAATGAA GATGTGATAAATTGATTTAATTTGATTGATAAAGAAGAGAAAAATAAATAAAAAATGAAGGTGAAAAAGGGGTGAAGATG TGTATATATCATAACTCTTAATATATTAATCGGTCCTTAATTATAAGGTCATATTAGCATAAAATGTTAATTTATTAAAA AAACATATTATGAAGTTAATTATTTTATTAGTTTTATTAAATGTATCGATTTTTTTATAATTACCCTTAATTAATGAATT ATATTGAAGTTGAAAAACATTAATATTAGTTTTCAATTTTTTTTAATTACAAAGTATGATAAATATGAAAAAATACAATA AACATTTCTAGAATGTAGTAAAGAGTTTTATATAAAAGTACATGAAACATGTCTCAAAAAATATTATAATTAAGGACAAA AAGGGTAGAGTATATTACAATATATCATTCCTCAGAAAAAATGAGACACCATCCATCAAAAGTAAGAATAGAAAATAAAT ATTTGAGACACCTTAAGAAGTTTGAATTTGAGTGAGCTTCAATTAATGCTCAAATCTCCGCGAGCACCTTTAGTCTCAAG TAATGACAAAGCATACAGCTGGATTGGAGGTACAGAAATTTATCAACAAATTAAATAAATAAAAAGAGACACATTTACTT TGTAGGATGACATTTTATACTTAGACGGGTCATAGTCAACATAGAGGGTCAATTTCAATTTCCAACAGCTGATTGGATTC AAAGGAAACACTTTTTTTGTGGTAGACTGTCGCACAATATGGAAGCTCGCTCCTCCTCCTACTAGTGGCACTTGGTTAAA CTGTTGCACTTATATAATATTTTTCTCCAAATAATTAAGTTAAAATGGATAATTATTGTCTTTCAAGAGATCTCTATATA CTAATCTTTCATTATTTGTGATGAACAGGTTTGCAGGCCAACATTGTTCAGGAGATCTATGAAAAGGTTCAACGTTGCAT GGTGGGCTTACTCCTTTCCGGTTACCGTTCTGGCGATGGCTTCCACGGACTATGCCGAAGAAGTCAAAGGAACAATATCT CACGTGCTAATGCTTGTTCTCTTGGCACTTTCTGTTCTGGTCTCCCTTGCTCTAACGGTGTTCACTTTTATCAACTCTAA GATGCTACTGCCGGATGATGATCCCATTGCCACCTTCCTTATTGTTTAAGTGCGTGCTTAAATACCGGGCGTTGCGACGT GGAAAAACTATCATCTCACTTAAGAAAAGATAAATCATTCACATTTCATCCTAAAATGTGTGTTAACATTCGTTAACACT AGTCACGAGGAACACCCTCTACTTTGGATGATCAAAACCTTCTTATTTTGATAATATTTATTTATTTGTTTTCAAGTTAG ATTTTGGAGTACTTTGGATGATCAAAGCCTTCATTTTTTTCATAATTTTTTTTCACGTTAGATTTTGGAGGGTATGTAAT GGTACAAGAAATTAAGTGCATTTTATGGTCTCAAAAAAGAATTCCACACTAAGATAAATGTCTCCCTCTAAAAGGGGGAA CACCGACGCCCACCAAATTTTAAG
CDS sequence (LotjaGi1g1v0424700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGACTAGGAAAAATGCACACACATCTACCCTTCCCTGTATACAAGTTCGATACATGGCAGCTCAAGATCCTAAACC CGAGATTGCGCTTGTCATAGACAACACAGTCTCCACCATTATTTCCCGCGAACCACCCTCGTTTATAGTTGCGAGGCGCT TGTTAGCGTCCCTAAACTCTGTACTAACAAAATTGCATGCAGGTTATTTCAGAATAAGTCTCTCCCTCGGTGGCCAAGCT TTGTTATGGAAGACACTAATCGGACCAACACACGACAAAAGCACCCTGCGACACGTGGTTCACATGGTTCCTTCCTCCGC TTTCCTCGTACTATGGTCTCTGGCTCTCTTCACACTCGCATTGCTCTCTCTTCTCTACCTTCTAAGGTGCTTGTTTCACT TCAATATGGTAAAGGCAGAGTTCTTGCACCATGTCGGGGTTAACTACCTCTTCGCTCCGTGGATCTCGTGGTTTCTCTTA CTCCAATCCGCGCCATTCGTGGCGCCGAAAACGGCCACCTATTTGGTTCTTTGGTGGGTGTTTGCGGTGCCGGTTGTGGT GCTGGACGTGAAAATCTACGGTCAGTGGTTCACGAAAGGGAAGAGGTTTCTGTCCACCGCGGCAAACCCAACAAGCCAGT TGTCAGTGATAGGCAACTTGGTGGGGGCGCAAGCCGCGGCGCACATGGGTTGGAAAGAGAGTGCGGTGTGCTTATTCTCG CTAGGGATGGTGCATTACTTGGTGTTGTTTGTCACGCTTTATCAGCGGTTGTCTGGTGGAAATCGCCTTCCGGTGTTGTT GAGGCCGGTTTTCTTCTTGTTCTTTGCGGCGCCCGGCGTGGCGAGCTTGGCTTGGGGATCCATTGTTGGAGGCTTTGATA CCCTTTCCAAGATGCTCTTCTTTCTGTCGCTTTTCCTCTTCATGTCACTGGTTTGCAGGCCAACATTGTTCAGGAGATCT ATGAAAAGGTTCAACGTTGCATGGTGGGCTTACTCCTTTCCGGTTACCGTTCTGGCGATGGCTTCCACGGACTATGCCGA AGAAGTCAAAGGAACAATATCTCACGTGCTAATGCTTGTTCTCTTGGCACTTTCTGTTCTGGTCTCCCTTGCTCTAACGG TGTTCACTTTTATCAACTCTAAGATGCTACTGCCGGATGATGATCCCATTGCCACCTTCCTTATTGTTTAA
Protein sequence (LotjaGi1g1v0424700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWTRKNAHTSTLPCIQVRYMAAQDPKPEIALVIDNTVSTIISREPPSFIVARRLLASLNSVLTKLHAGYFRISLSLGGQA LLWKTLIGPTHDKSTLRHVVHMVPSSAFLVLWSLALFTLALLSLLYLLRCLFHFNMVKAEFLHHVGVNYLFAPWISWFLL LQSAPFVAPKTATYLVLWWVFAVPVVVLDVKIYGQWFTKGKRFLSTAANPTSQLSVIGNLVGAQAAAHMGWKESAVCLFS LGMVHYLVLFVTLYQRLSGGNRLPVLLRPVFFLFFAAPGVASLAWGSIVGGFDTLSKMLFFLSLFLFMSLVCRPTLFRRS MKRFNVAWWAYSFPVTVLAMASTDYAEEVKGTISHVLMLVLLALSVLVSLALTVFTFINSKMLLPDDDPIATFLIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 67 | 67 | - | – | |
| PANTHER | 27 | 394 | 368 | 4.6E-209 | – | |
| PANTHER | 27 | 394 | 368 | 4.6E-209 | – | |
| Gene3D | 60 | 384 | 325 | 8.0E-67 | ||
| CDD | 65 | 352 | 288 | 2.3265E-65 | – | |
| Pfam | 65 | 376 | 312 | 3.1E-47 | ||
| Phobius | 68 | 87 | 20 | - | – | |
| Phobius | 88 | 106 | 19 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 107 | 129 | 23 | - | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| Phobius | 141 | 160 | 20 | - | – | |
| TMHMM | 142 | 161 | 20 | - | – | |
| Phobius | 161 | 171 | 11 | - | – | |
| Phobius | 172 | 193 | 22 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 194 | 213 | 20 | - | – | |
| Phobius | 214 | 231 | 18 | - | – | |
| Phobius | 232 | 236 | 5 | - | – | |
| TMHMM | 235 | 254 | 20 | - | – | |
| Phobius | 237 | 254 | 18 | - | – | |
| Phobius | 255 | 265 | 11 | - | – | |
| TMHMM | 266 | 288 | 23 | - | – | |
| Phobius | 266 | 288 | 23 | - | – | |
| Phobius | 289 | 293 | 5 | - | – | |
| Phobius | 294 | 312 | 19 | - | – | |
| TMHMM | 298 | 317 | 20 | - | – | |
| Phobius | 313 | 323 | 11 | - | – | |
| Phobius | 324 | 341 | 18 | - | – | |
| TMHMM | 324 | 341 | 18 | - | – | |
| Phobius | 342 | 352 | 11 | - | – | |
| Phobius | 353 | 378 | 26 | - | – | |
| TMHMM | 356 | 378 | 23 | - | – | |
| Phobius | 379 | 396 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0424700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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