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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0427300 |
| Transcript ID | LotjaGi1g1v0427300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tuftelin interacting protein 11 domain containing protein; TAIR: AT1G17070.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein; Swiss-Prot: sp|Q9SHG6|STIP1_ARATH Septin and tuftelin-interacting protein 1 homolog 1; TrEMBL-Plants: tr|A0A0B2RLS8|A0A0B2RLS8_GLYSO Tuftelin-interacting protein 11; Found in the gene: LotjaGi1g1v0427300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92134148..92139247) extracted from Lotus japonicus Gifu genome v1.2.
CACCGCCTTGGTAGCGTCGTCGTTTTGGCCACACCCAGGTATTTCATCTCCCCGATTCTCACTTCAACTTGCTTCATCTC TTCCCTTTTGAACCCTAATTTTGTTTTCATCAGAGTTAATAAGGGAGAGAACATGGACGAGGACCAAGAGATGGACCGAT TCGGAATGGACAACGATTTCGAAGGCGGCGAATGGATTGCCGGCGAGTATTACTACCGGAAGCGCAAAGAGAAGCATGCA CAAACCAAAGACGATGTGCTCTATGGAGTTTTTGCCGACTCCGACGATGATTATTCCAGCAGAAAACGCCGCAAAGATCG CAGTATGTCCAAAAAGCAAGACCTCACCAAACCGGTGAATTTTGTCTCTACAGGTACTTTTATGCCTAATGAGGAGATTG ATAAGAATTCTAGAGAGAAGGATGAGGATGAGAGGGATGGTGATGTTAGTGATGGTAGGCCTGGTTTAGGTCTTGGTATG GGGGGATTAGGGTCTGCTAGCACATCAGGGTCTGGTTTAGGGTTTAATTCCGGTCGTGCTGCGGGCAATGGTTCTGATAG AAACAATGATGAGTCGGATGAGAATGATGATGAGAAGTTCTTGCCGACGGCGTTTGGGAAGATGATTAAGGAGGGGGCAA TGAGGAGGGAAAGGGAGAGGCAGATGGAGAGAAAGGAGAAGAAGAGAGGGGACAGGCAGGGTGCTGCTGGTCAGGATGTA TCGGGTGATGTGGGGAAATTCGAGAAGCATACTAAGGGAATAGGGATGAAGTTGTTGGAGAGGATGGGTTATAAAGGGGG TGGTCTTGGGAAGAATGAGCAGGGTATTTTGAAACCTATTGAGGCCAGATTGAGGGCTAAGAACTCTGGTCTTGGGTTTA ATAACGAGACTCCGGCTGCGCCGTTGCCTGCTTTGCAGGTGGAGAGCCAGAGTGTGTCTGAAGCTGCCCAGCCGACGGTT GGTAGGACGAAAGAGAGGTCGTGGTCAAGGCAATCGAGGTCGAAGAAGAAGCAAAAGGAGGAAGAATATGTAACTGCCGA GCAGTTGTTGGCGAGCAAGCAAGAAGAAGATTCTGAAGTTGTTCACAGGATTTTAGATATGAGGGGACCGCAGGTTCGAG TGTATACAAATTTGTCTGACTTGAATGCTGAGGAGAAAGCAAAGGAAAGAGATGTCCCGATGCCAGAACTTCAGCATAAC GTAGGGTTAATAGTTCGGTTGGCCGAGGCTGAGATCCAAGAGATTGATAGAGATTTGAGGAGAGAGAGGGAGACAGCACT TAGCTTGAAAAAAGAAAAGGAGAAGTTAGAAAGTGAGGCAGCATTTCAAAAGAAGCAGCTGGATGGTTTTGAGAAAATAA TGGATGTGTTGGACCAAATCGGAGAAGAGAACACTGCAGGAACATTAACACTGGATTCCCTTGCCCAATGCTTTAGGGAG TTGCACCAGAAATATGCTGATAACTACAAGTTGTGTAATTTATCATGCATTGCTTGCTCGTATGCCCTGCCTTTGTTTAT TAGAGTGTTCCAAGGATGGGATCCTCTTCGAAATCCATCCCATGGGCTGGAGTTGGTATCACAGTGGAAGACATTGCTTC AAGGAGAAGATTGTCTCGACATTTGGGATGATTCATCACCTTATGCTCAGTTGGTTTCAGAGGTTGTGTTGCCAGCTGTT AGAATATCTGGTATCAATACCTGGCAGGCACGGGATCCTGAGCCAATGCTGCGGTTTCTGGAGTCGTGGGAAAAGTTGCT TCCTTCTTCAGTTCTTGCAACTATATTGGACAATATAGTCATGCCAAAACTGTCAAGTGCTGTAGATACTTGGGAACCAC ATCGTGAGACCATTCCTATCCACACTTGGGTGCATCCATGGTTACCTCTGCTAGGGCACAAGTTGGAGGGTATCTACCAG GTGATTCGTTTCAAATTGAGTACTGTTCTTGGTGCGTGGCACCCAAGTGATGGTTCTGCGTATGCTATTCTGTCTCCTTG GAAGACTGTATTTGATTCTGTAAGTTGGGAACAACTTATGCTTCGTTTTATTGTACCAAAGTTGCAGCTTGTCTTGCAAG AATTCCAAGTGAACCCAGCAAATCAAAATCTTGATCACTTTTATTGGGTAATGAACTGGGCTTCAGCTATTCCAATTCAT CTCATGGCTGATATGATGGAGAAATTCTTCTTTTCCAAGTGGCTTCAGGTTTTGTATCATTGGTTGTGCTCAAATCCCAA CTTTGAAGAAGTTACAAAATGGTATTTGGGATGGAAAGAACTTATTCCAAAAGAACTTTTGGCAAATGAAAGTATTCGAT TCCAGCTTAATCGCGGTCTTGGTATGATGAATCAGGCTGTTGAAGGTATGGAGGTGGTCCAACCCGGTTTAAAGGAGAAT ATAAGCTATCTTAGGGTACTTGAGCAAAGACAATTTGAGGCTCAGCAGAAAGCAGCCTATGCTCAACAACAAGCTGCTGC AAGCTTGGGCGGTGCTGTCAATGCTGATGGTGCGCATGAGTTGAGCTTGAAAGAAGTCATTGAGGCCCATGCTCAGCAAC ATGGTTTACTATTCAAGCTCAAACCTGGTAGAATGCACAATGGTCACCAGATATATGGGTTTGGTAATGTCAGCATAATA ATAGACTCTCTAAATCAAAAGGTATATGCCCAAAATGAGGAAACATGGTCTTTAGAATCTCTTCAAGGATTGGTAGCGTT GCATCATAAATCCCTTGGTAAAAGACGCTGAATCCTGTGTAGCAATTTGAAGTTACATCTCAGTTCTGAGGTACTCTATC TAGGTTTCTTGTATGAGTTGTTTTCTCTTTATTACTGTTGTAGACTCAGGATGTTGTGAGTTTCTTATGTTTTGTTTTTG AAACTTTATGTTTGATAATAAGGGGAATAGGTAGATGTAGAGTGATGGATGAAATGGGATTTGGAGCCAAATTCTTAAAT TAGTTGCCATGTTCACTACAATTTATTTTAATTTCTAGGTTGGTTGACAACGTGAATCAAATGACGCCTGTCATTTTGCT CTATCAAAAATCCAATTTTGTTTGTAGAGAACATTTACATAAAGGTCTATCTTATTGGTTTTTTTCTTATGTTTTCCTTG TTCTTCTGCTTCTATTAATTGAGCTACCATCCATTTCATCTGATATTCTCACTGGAGCCTCTATTGACTTTCCTTACAGA TGTGAAAAATTAGCATCAAACAAACTGCCTCTCTAAGACTGTATTGTTGCATAGATTACTGACATCTAAGGGTTTGGATT GCTAGATTACTTAATATAACAACAGTTATATAGGTAAAAAATATGAGTTATGGCTTCCTAAAGCAAGAAGACTACAGTTT GAACATGTTTGTCACACTTGTAAGCTCTATTTAGGAAATAGACACACAATGTGTGATCATAATACGGAACAAAAGATCCT ACCTCTAAAATAATATAAACATAAAAAATAACACAAATAGGTAGGATTAGGAATTTGAAACAACAAAAACAATGCTGCTG TTCAAACGATACTTGTGGCAAATATGTGTATTTTCGTTTATTAAACCTGGTCAAGATTTGCAGTATGCTATAGTATGCTG TTGACCTGTTGAAGTGTTGTGGGACTTTGAACATATACCATATCTTTTAAATTTCTCACAAGCGTGGTTGAATAAGTGAT TTATGTACGTGACCAGTTAATACTAATTCAAGAGTAAAACTTTTTATACCAATCTCCCAACATTTATTTTGCTTGTATTT ACTAGTATAAAATCTAATTGAATAAAGCAAGACACTAATGAACCATAACTTATCAATAAGGATAATTTGACTCGTTTTCT AGAGAAAGACTTAAAAAAGAAAGAAACACAGGTGAGTTGTTACACTAACACAGTTAAATTGCTCTTATAGGCTTCCAGTT TTTGTTTTAACATAGTCTAGATAAAGACATTATCTCAAAATTGATAATGCATATGAAGGGAACGAACAAGAACCAAGAAT AGCGTAGCAGAGGAAAGATGGAGTCTTGATCGGAGTAGATCTAACAAAGCCAAAGGAGCAGAGCTCGCTACATGCAGAAT ACACATATACTAACATCAAGTGTCATCTTGGATGAGTGTTGCACATTGAAGGAAAAGAATTTTTGAGATTGCATGGTGAT CAACTTAAGTACTAGACAAGATGTCCAGTCACAGATATCATCTGTGAGTTTAGCAGAATCACATGCCTTTTCCTTGCAAG TATTCCAGGACAACTCAGGTTTTGCATCTTCAAGCCATATTGATTTTGATGGAAGCAGCTTGCTGCAGAATAATTCTTCA TGGCTGCAAGTAGCTCCAAAGCCTGCACGTAGGCGTACCTATACCAAGGTTTGTAGTGGAAATCTCTTTCCAAACTAGCA CTAATACTACTAATGATATCTCAAAAGGGACATAAATGCTATGATATAGCATGTTGTGACCAATTTTGAAGCTAAACATG ATTTTGCCTGTTGGCACTTTTAATGTATCGCTTAAGTTGTATGATCTGACAGACGCAAAAGGCAGGTTCTGTAGGAAGTT CAATTGATGTCACCACTTTCAAGAACTATGAACGAACTGATCCATGCAATTGAGTGCATGTTTGGACTGACTGGTCTGCT GAACGATACAAGTGGTTCAGGATGGAAATTGGTATATGTGGATTATGAGAATGATGTTCTGCTTGTGCGGGATGATCCTT GGGAAATTTAGTTTTAACAATTTCAGAGCTTAGTTAACATCTTGTGTACGAGTCAGTGTGAAGTATCCTTCACCCTTTCT GGCATACGGTTCAGCAGATGAATGAAGAGGGTATGGAGCTTCTAAACAGTGGTGTGTTGCAAGGTGTCAATGGTGAAGGT TGCTGTATTTGAGATTATTAATAAACCTCTTTTTGTAAGGCTTTTGTTGTGGGAAATGTAGTTTATTCCGTTGTCATTGA ATTGGCTTGTATAACGTACGAGTTTGAAAACATGACATTGTAAGATGTTCCCACAAATACTTGTGTGTTTGTATATAAGT TCAAGTTGTCAAAAAATATATTCCCTTCAATGACAAGAGAGACATGGATTGGTATAAAAT
CDS sequence (LotjaGi1g1v0427300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGAGGACCAAGAGATGGACCGATTCGGAATGGACAACGATTTCGAAGGCGGCGAATGGATTGCCGGCGAGTATTA CTACCGGAAGCGCAAAGAGAAGCATGCACAAACCAAAGACGATGTGCTCTATGGAGTTTTTGCCGACTCCGACGATGATT ATTCCAGCAGAAAACGCCGCAAAGATCGCAGTATGTCCAAAAAGCAAGACCTCACCAAACCGGTGAATTTTGTCTCTACA GGTACTTTTATGCCTAATGAGGAGATTGATAAGAATTCTAGAGAGAAGGATGAGGATGAGAGGGATGGTGATGTTAGTGA TGGTAGGCCTGGTTTAGGTCTTGGTATGGGGGGATTAGGGTCTGCTAGCACATCAGGGTCTGGTTTAGGGTTTAATTCCG GTCGTGCTGCGGGCAATGGTTCTGATAGAAACAATGATGAGTCGGATGAGAATGATGATGAGAAGTTCTTGCCGACGGCG TTTGGGAAGATGATTAAGGAGGGGGCAATGAGGAGGGAAAGGGAGAGGCAGATGGAGAGAAAGGAGAAGAAGAGAGGGGA CAGGCAGGGTGCTGCTGGTCAGGATGTATCGGGTGATGTGGGGAAATTCGAGAAGCATACTAAGGGAATAGGGATGAAGT TGTTGGAGAGGATGGGTTATAAAGGGGGTGGTCTTGGGAAGAATGAGCAGGGTATTTTGAAACCTATTGAGGCCAGATTG AGGGCTAAGAACTCTGGTCTTGGGTTTAATAACGAGACTCCGGCTGCGCCGTTGCCTGCTTTGCAGGTGGAGAGCCAGAG TGTGTCTGAAGCTGCCCAGCCGACGGTTGGTAGGACGAAAGAGAGGTCGTGGTCAAGGCAATCGAGGTCGAAGAAGAAGC AAAAGGAGGAAGAATATGTAACTGCCGAGCAGTTGTTGGCGAGCAAGCAAGAAGAAGATTCTGAAGTTGTTCACAGGATT TTAGATATGAGGGGACCGCAGGTTCGAGTGTATACAAATTTGTCTGACTTGAATGCTGAGGAGAAAGCAAAGGAAAGAGA TGTCCCGATGCCAGAACTTCAGCATAACGTAGGGTTAATAGTTCGGTTGGCCGAGGCTGAGATCCAAGAGATTGATAGAG ATTTGAGGAGAGAGAGGGAGACAGCACTTAGCTTGAAAAAAGAAAAGGAGAAGTTAGAAAGTGAGGCAGCATTTCAAAAG AAGCAGCTGGATGGTTTTGAGAAAATAATGGATGTGTTGGACCAAATCGGAGAAGAGAACACTGCAGGAACATTAACACT GGATTCCCTTGCCCAATGCTTTAGGGAGTTGCACCAGAAATATGCTGATAACTACAAGTTGTGTAATTTATCATGCATTG CTTGCTCGTATGCCCTGCCTTTGTTTATTAGAGTGTTCCAAGGATGGGATCCTCTTCGAAATCCATCCCATGGGCTGGAG TTGGTATCACAGTGGAAGACATTGCTTCAAGGAGAAGATTGTCTCGACATTTGGGATGATTCATCACCTTATGCTCAGTT GGTTTCAGAGGTTGTGTTGCCAGCTGTTAGAATATCTGGTATCAATACCTGGCAGGCACGGGATCCTGAGCCAATGCTGC GGTTTCTGGAGTCGTGGGAAAAGTTGCTTCCTTCTTCAGTTCTTGCAACTATATTGGACAATATAGTCATGCCAAAACTG TCAAGTGCTGTAGATACTTGGGAACCACATCGTGAGACCATTCCTATCCACACTTGGGTGCATCCATGGTTACCTCTGCT AGGGCACAAGTTGGAGGGTATCTACCAGGTGATTCGTTTCAAATTGAGTACTGTTCTTGGTGCGTGGCACCCAAGTGATG GTTCTGCGTATGCTATTCTGTCTCCTTGGAAGACTGTATTTGATTCTGTAAGTTGGGAACAACTTATGCTTCGTTTTATT GTACCAAAGTTGCAGCTTGTCTTGCAAGAATTCCAAGTGAACCCAGCAAATCAAAATCTTGATCACTTTTATTGGGTAAT GAACTGGGCTTCAGCTATTCCAATTCATCTCATGGCTGATATGATGGAGAAATTCTTCTTTTCCAAGTGGCTTCAGGTTT TGTATCATTGGTTGTGCTCAAATCCCAACTTTGAAGAAGTTACAAAATGGTATTTGGGATGGAAAGAACTTATTCCAAAA GAACTTTTGGCAAATGAAAGTATTCGATTCCAGCTTAATCGCGGTCTTGGTATGATGAATCAGGCTGTTGAAGGTATGGA GGTGGTCCAACCCGGTTTAAAGGAGAATATAAGCTATCTTAGGGTACTTGAGCAAAGACAATTTGAGGCTCAGCAGAAAG CAGCCTATGCTCAACAACAAGCTGCTGCAAGCTTGGGCGGTGCTGTCAATGCTGATGGTGCGCATGAGTTGAGCTTGAAA GAAGTCATTGAGGCCCATGCTCAGCAACATGGTTTACTATTCAAGCTCAAACCTGGTAGAATGCACAATGGTCACCAGAT ATATGGGTTTGGTAATGTCAGCATAATAATAGACTCTCTAAATCAAAAGGTATATGCCCAAAATGAGGAAACATGGTCTT TAGAATCTCTTCAAGGATTGGTAGCGTTGCATCATAAATCCCTTGGTAAAAGACGCTGA
Protein sequence (LotjaGi1g1v0427300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEDQEMDRFGMDNDFEGGEWIAGEYYYRKRKEKHAQTKDDVLYGVFADSDDDYSSRKRRKDRSMSKKQDLTKPVNFVST GTFMPNEEIDKNSREKDEDERDGDVSDGRPGLGLGMGGLGSASTSGSGLGFNSGRAAGNGSDRNNDESDENDDEKFLPTA FGKMIKEGAMRRERERQMERKEKKRGDRQGAAGQDVSGDVGKFEKHTKGIGMKLLERMGYKGGGLGKNEQGILKPIEARL RAKNSGLGFNNETPAAPLPALQVESQSVSEAAQPTVGRTKERSWSRQSRSKKKQKEEEYVTAEQLLASKQEEDSEVVHRI LDMRGPQVRVYTNLSDLNAEEKAKERDVPMPELQHNVGLIVRLAEAEIQEIDRDLRRERETALSLKKEKEKLESEAAFQK KQLDGFEKIMDVLDQIGEENTAGTLTLDSLAQCFRELHQKYADNYKLCNLSCIACSYALPLFIRVFQGWDPLRNPSHGLE LVSQWKTLLQGEDCLDIWDDSSPYAQLVSEVVLPAVRISGINTWQARDPEPMLRFLESWEKLLPSSVLATILDNIVMPKL SSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGIYQVIRFKLSTVLGAWHPSDGSAYAILSPWKTVFDSVSWEQLMLRFI VPKLQLVLQEFQVNPANQNLDHFYWVMNWASAIPIHLMADMMEKFFFSKWLQVLYHWLCSNPNFEEVTKWYLGWKELIPK ELLANESIRFQLNRGLGMMNQAVEGMEVVQPGLKENISYLRVLEQRQFEAQQKAAYAQQQAAASLGGAVNADGAHELSLK EVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEETWSLESLQGLVALHHKSLGKRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 867 | 867 | 2.2E-276 | ||
| Pfam | 4 | 101 | 98 | 1.1E-20 | ||
| PANTHER | 7 | 861 | 855 | 0.0 | – | |
| PANTHER | 7 | 861 | 855 | 0.0 | – | |
| MobiDBLite | 39 | 208 | 170 | - | – | |
| MobiDBLite | 51 | 69 | 19 | - | – | |
| MobiDBLite | 70 | 87 | 18 | - | – | |
| MobiDBLite | 88 | 107 | 20 | - | – | |
| MobiDBLite | 120 | 141 | 22 | - | – | |
| MobiDBLite | 154 | 190 | 37 | - | – | |
| SMART | 205 | 250 | 46 | 2.0E-15 | ||
| ProSiteProfiles | 207 | 252 | 46 | 15.468 | ||
| Pfam | 207 | 248 | 42 | 1.5E-13 | ||
| MobiDBLite | 263 | 281 | 19 | - | – | |
| MobiDBLite | 263 | 298 | 36 | - | – | |
| Coils | 292 | 312 | 21 | - | – | |
| Coils | 361 | 409 | 49 | - | – | |
| Pfam | 427 | 694 | 268 | 1.3E-85 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0427300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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