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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0429000 |
| Transcript ID | LotjaGi1g1v0429000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin-regulated protein 2, putative; TAIR: AT1G75750.1 GAST1 protein homolog 1; Swiss-Prot: sp|Q93X17|SNAK2_SOLTU Snakin-2; TrEMBL-Plants: tr|I1K7J7|I1K7J7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0429000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92394186..92395322) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATTTGTTATGTGTCATTATTCATAGATAAATAGAGTTTAGTTTTATCTTTCAACTATAAATACTGACTTCTTCATT CTCATTCAGTGTACTTTTCAAGAGCAATACCTCTTCTTTGCTAAATTGCTAGAGCTATAAGCCATGGCTTTCTCTAAACT TCTAATTGCATCTCTTCTGGTGTCTTTTATCCTTCTCCATCTCGTTCATGCTGATCAAGCGGTAATTTAAAGATGCTGGT TTTCTTAATTTCTCTATTGATTAGTAATCCATTCTTTGGTATAATAACTAGTTACTATTATTCCTGATCTTTGTTCTCCA ATCTCCATTCCTTTATGCATGTTTCACAAGCTCTCCAATTAAGTGTTATTTTATCAGTAAAGCAAATTATTAATTAACTA ATTTAATTTAACTGCACTGCTTCTTATAGAAACTGCAGGTACCAGCACAGGCTGATCAGGTTTCTCTTCTTCAGGATATA GGTACTAATTTACATTATACATTTCCAATCTCGAATCATTCTGACACCTAGAAGCTCTTTAAATAAGCTTGTCTCAAAAA TTGAATTTGGCTTTAAAATTAATAGTTGAATGGTTTCAAAAAATGAGACTTATAAGAAGTTTGATTAATTTCAGATTGCG ATGGAGCATGTGCTGCAAGGTGCAGTAAAGCGTCTCGCCAGCGCCTCTGCCACAGAGCGTGTGGAACATGCTGCAGGCGC TGCCACTGCGTGCCGCCAGGCACTTCCGGCCACCAAGAAGTGTGTCCTTGCTATGCCAGCCTCACTACCCATGGCGGCAG AAAGAAGTGCCCCTAGAGTTCAGTTTCATAACTACCCACACATGCAAAGATTGTGTCATAATATTATTCTGAATATTTAA ATCCTTGGTTTGTAATATCGCATCTTAATGTACTATTAACCTACAATAAGAAGTAAATGTGGTCCTATATAAGACTAGCA TGGAAAATAAACTTTGTTTTCTATGAATGTTGAATGAGTGTGTGTTTGTTGATAAAATAATGAGGAATAATATAGTCATG TGTTTTCTGTTTTACCTCTGCTGTTGTTGACTTGTTGTATCATCAAACTTTATATGTTTCAATAAAACTGTAATGTGATT TTTTCTAGTTTCGTTTA
CDS sequence (LotjaGi1g1v0429000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCTCTAAACTTCTAATTGCATCTCTTCTGGTGTCTTTTATCCTTCTCCATCTCGTTCATGCTGATCAAGCGGT ACCAGCACAGGCTGATCAGGTTTCTCTTCTTCAGGATATAGATTGCGATGGAGCATGTGCTGCAAGGTGCAGTAAAGCGT CTCGCCAGCGCCTCTGCCACAGAGCGTGTGGAACATGCTGCAGGCGCTGCCACTGCGTGCCGCCAGGCACTTCCGGCCAC CAAGAAGTGTGTCCTTGCTATGCCAGCCTCACTACCCATGGCGGCAGAAAGAAGTGCCCCTAG
Protein sequence (LotjaGi1g1v0429000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSKLLIASLLVSFILLHLVHADQAVPAQADQVSLLQDIDCDGACAARCSKASRQRLCHRACGTCCRRCHCVPPGTSGH QEVCPCYASLTTHGGRKKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| PANTHER | 3 | 100 | 98 | 2.1E-48 | – | |
| PANTHER | 3 | 100 | 98 | 2.1E-48 | – | |
| Phobius | 6 | 18 | 13 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 100 | 77 | - | – | |
| Pfam | 41 | 100 | 60 | 3.2E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0429000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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