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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0429100 |
| Transcript ID | LotjaGi1g1v0429100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein retaining receptor; TAIR: AT1G75760.1 ER lumen protein retaining receptor family protein; Swiss-Prot: sp|Q86JE5|ERD2_DICDI ER lumen protein-retaining receptor; TrEMBL-Plants: tr|I3SZ51|I3SZ51_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0429100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92397442..92400818) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGGCAACCAAGAGACCGATCCACGCCCTGACCACATGGGTTCGGCGGCAGCCGCCCAAGATGAAGGCCTTTCTGGC GGTGGTTGCCGGCCTCGCAACCTTGCTCTTCCTCAGAATGGTGGTTCACGACCACGACAACCTCTTCATCGCAGCTGAGT TTGTTCACGCATTAGGAATTTCCCTCCTCATTTTCAAACTCACCAAGGAAAAAACTTGTGCTGGTAGGTACCATTTACCA AATCCAATTCCTTCATTCAATCGAATTTGGAATCATTTCTTATATTTCTTGAGCTGGTAGGTTCCAATCCAACCTCTCAA ATTAGGGTTTTGATAGTTGGCCTTGTGGGTTATCATTACTCATTGATGCTCCTAAGAATCATGTTTCTGATATACATTGT ATCTTTTGAGAGATTGACATTCATAATTTTCTTGCATGTACAATACAAGCAAGCTGCCAACCTAATTATTGTTTGAATCG GCTTCGATTGCTTGTATGCTCTGTTTTATACAATGTGCATGTGTGTTTTTCTAATCCTTATGAGACATGAAATAAAGAAA AAAGTTGATTTTTGGTATTGGTAAGTTATTCCTAAAGTTGTGTTCTTGTGTGTTTTATTCTACATTTGGGAGTCTCAGGA TCATTTTTCCATGGATTAGAATCACTTTTAAACAATTACTATATAGACTTTTGACAATAAAAAAATGATTTTACTCCCAA AATCAATTCAGCAGATAAGCTAGAGCTCCGGCAGACATAGTTGATTGTGTGATTTCATAACTGAATATAATAGAAGTCAC TTTTCTGATAAACTTATCCAAACATGAATCACTTTATTTTCACCTCACTTTTACTACAATCAATTTTATCCAAAATCCAT TCTGATAACGCTGATTAAAACATGAAGCTCATCTGTGGCGCCCACTGCATGATATCCTCCTTTGATTTGCAAACGTTTTC TTGCTAACTGTCATGCATTTCCCTATTAAATTGAAGTACAGAACAAGTAGCTATGTTTCTAACAAAGAAATGAGAAGAGT GTTATCTTCTATCTATTTATCTTTCTAATATTTTTGCATGTAACAGCCAGGTTTATAACTGTGTTTTAAATCATTGCAGG ACTCTCACTTAAATCACAGGAACTGACGGCTATGTTTCTAGCTGTTAGACTTTACTGCAGTTTTGTCATGGAATATGATA TACACACCATACTCGACACGGCAACACTGGTGACGACCCTCTGGGTTATTTATATGATGCGCTTCAAACTGAAATCCAGT TATATGGATGATAAGGACAACCTTCCAATATACTATGTGGTAAGTACTCTGTCTTGTAGATAAGGTATGTGTCTTCTTGC AGATTAGGCTATTAGCTATATCACACCCTTCATTAATTTTCACTTGGGCCTCATTTTAAGCATCTCAACAATTCTCGTAT TGGATTTCTTCAACAATCTAATGTCTAATAAAGTTTTAATAAGAAGCTTTCCTCTCATGACATGAGAGTAGCATCAGAAT CATGGTAATTAGCCCCTATCAGCTCAATTGGTACAAGACTTGCATGCCTAAGATTCTGAGCCTGTAGGTCCTGGGATCAA ATCTTGGAAGGTAAAGTACTTGCGTGTGGGGGAGAGGAAGTTTCCTATGCTTATACTGCGAGGTAAACCTTGGTGCATGT GTGGACCAGCTAAAAGCCAAATCCTGAGTGTTATAATATTTTTTCCTGCAAACTTGTTTGGTTTTGTTGCCTGTTCACAA ACAGATAGCCACAAGTCTTGTTGTGAGAAAGGTGATTTGGAATAGTGCTTGTTATAATTTCTTTTTAAAATCTTTATTTG AAGAATCACATTTTTTAAATCTCTCAAAATGATTCAAGGTAAAAGAAACTTTATCCATCTTATCATATTGACATCACTAT TGTTCTCTGTTTTTCCTTTTACTAGTGAATTTCTGAGATGAAAATGTGTTAGTTTCATACACAAGTCACCAACTTTAGGC CCGAAGTGAAAGCACCATTCTCATAAGAATTTATCTTTGATGTGTCTAAATGAATGAACGATCCATTGCTCTACATATGG AGTATTTTAAATTTTCTTTCACCAAAATGCAGGTGATGCCTTGTGCTGCGCTCTCCTTGCTTATTCATCCAAATACCCGC CATAATCCAATTAACAGGATTCTCTGGGGCTTTTGTGTTTACCTTGAAGCTGTATCAGTTCTCCCTCAGCTGAGGGTCAT GCAGAACGCTAAGGTCTCTTAGAAATATAGTTTGGCCCTTCACTTTTTCTTTACTATCTTTTAATTGTATGATGTATGTT GTCATTACATCTTCCTTTGCCAGTTAGGCTTTCTTAAAACAGTTATAGCTGATACTTTTCAACTTTCAGATTGTTGAACC ATTCACAGGACACTACGTTTTTGCCCTTGGAGTTGCAAGGTTCTTGAGTTGTGCACATTGGGTCCTCCAGGTTTGTAGAA TTTTAACCCATAAGATGTTAATTTCACCCAATTCTGAAAATAATCAGAACTATTTTATCCTAATATCCGGATATTTAGAA GTATCGTGATTTTCTTTTTATATATAACTTCGGGTTACGCATGGTTTATCAGAAATCATTGATCTAGTATTTCTGTATGA TACTCCTGCTTCAAACTATTGTACCACTAGATGGTAGTGTTTTGTTCATGCCTTCTTATATGAGTTGATCACCGCAATTG CGGTAAAGGGTTTTGGTGTTCCTGCAGTTGCAGCCGCATCAACCCGCATTTGTCTGCAAAGCTGCGGAACTGCAACCGGA GTTTTAAACTCTGAGTTGATGCATGCAAATATTCCATCAACATCTTTGGCTTGCCCGTTATATTTTTACCGTGTCAACCT TCCATTTCCGATGATAGATAGACCAAGCATGTACTTTATCTAAGAGACTAAATGTTTGTAGTGTCAGCTTCTCTTTTTCA TAATCAATTTAGGCACATAGAAGTCACTTCCATCAGTTTCTCCTCTGAAGTGATTTTGGCTTCAGAATCAATTATATAAG AATTTTCAAACATGCATTAAGGCAATGTCTATGTTATCTTCTGCAGGTATTAGATACTCGCGGCCGTCTACTAACTGCTT TGGGTTATGGATTGTGGCCTTCTATGGTACTTCTATCAGAAATTGTCCAAACTTTCATCCTGGCTGATTTTTGCTACTAC TACGTCAAGAGGTGGATGACAAATTCCCTGAATATTCAACATACATATTTTTTTTTGTCAAAATTCAACATACATTTTAA TACACTTTTCTCAGCTTTCTAACCTTTTATTTTGCCTCTTGGCTGCAGCATCTTTGGCGGACAACTTGTTGTAAGGCTTC CTTCAGGAGTGGTGTAA
CDS sequence (LotjaGi1g1v0429100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCAACCAAGAGACCGATCCACGCCCTGACCACATGGGTTCGGCGGCAGCCGCCCAAGATGAAGGCCTTTCTGGC GGTGGTTGCCGGCCTCGCAACCTTGCTCTTCCTCAGAATGGTGGTTCACGACCACGACAACCTCTTCATCGCAGCTGAGT TTGTTCACGCATTAGGAATTTCCCTCCTCATTTTCAAACTCACCAAGGAAAAAACTTGTGCTGGACTCTCACTTAAATCA CAGGAACTGACGGCTATGTTTCTAGCTGTTAGACTTTACTGCAGTTTTGTCATGGAATATGATATACACACCATACTCGA CACGGCAACACTGGTGACGACCCTCTGGGTTATTTATATGATGCGCTTCAAACTGAAATCCAGTTATATGGATGATAAGG ACAACCTTCCAATATACTATGTGGTGATGCCTTGTGCTGCGCTCTCCTTGCTTATTCATCCAAATACCCGCCATAATCCA ATTAACAGGATTCTCTGGGGCTTTTGTGTTTACCTTGAAGCTGTATCAGTTCTCCCTCAGCTGAGGGTCATGCAGAACGC TAAGGTATTAGATACTCGCGGCCGTCTACTAACTGCTTTGGGTTATGGATTGTGGCCTTCTATGGTACTTCTATCAGAAA TTGTCCAAACTTTCATCCTGGCTGATTTTTGCTACTACTACGTCAAGAGCATCTTTGGCGGACAACTTGTTGTAAGGCTT CCTTCAGGAGTGGTGTAA
Protein sequence (LotjaGi1g1v0429100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKATKRPIHALTTWVRRQPPKMKAFLAVVAGLATLLFLRMVVHDHDNLFIAAEFVHALGISLLIFKLTKEKTCAGLSLKS QELTAMFLAVRLYCSFVMEYDIHTILDTATLVTTLWVIYMMRFKLKSSYMDDKDNLPIYYVVMPCAALSLLIHPNTRHNP INRILWGFCVYLEAVSVLPQLRVMQNAKVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSIFGGQLVVRL PSGVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 189 | 189 | 1.3E-138 | ||
| PANTHER | 1 | 189 | 189 | 1.3E-138 | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| TMHMM | 24 | 43 | 20 | - | – | |
| Phobius | 24 | 42 | 19 | - | – | |
| Phobius | 43 | 47 | 5 | - | – | |
| Phobius | 48 | 68 | 21 | - | – | |
| TMHMM | 48 | 65 | 18 | - | – | |
| PRINTS | 48 | 67 | 20 | 2.6E-9 | ||
| Phobius | 69 | 79 | 11 | - | – | |
| Pfam | 72 | 191 | 120 | 1.6E-28 | ||
| PRINTS | 75 | 95 | 21 | 2.6E-9 | ||
| Phobius | 80 | 98 | 19 | - | – | |
| Phobius | 99 | 103 | 5 | - | – | |
| TMHMM | 102 | 121 | 20 | - | – | |
| Phobius | 104 | 123 | 20 | - | – | |
| Phobius | 124 | 134 | 11 | - | – | |
| Phobius | 135 | 152 | 18 | - | – | |
| TMHMM | 136 | 153 | 18 | - | – | |
| Phobius | 153 | 163 | 11 | - | – | |
| Phobius | 164 | 181 | 18 | - | – | |
| TMHMM | 165 | 184 | 20 | - | – | |
| PRINTS | 166 | 186 | 21 | 2.6E-9 | ||
| Phobius | 182 | 201 | 20 | - | – | |
| PANTHER | 188 | 245 | 58 | 1.3E-138 | – | |
| PANTHER | 188 | 245 | 58 | 1.3E-138 | ||
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 202 | 228 | 27 | - | – | |
| Phobius | 229 | 245 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi1g1v0429100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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