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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0429100 |
| Transcript ID | LotjaGi1g1v0429100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein retaining receptor; TAIR: AT1G75760.1 ER lumen protein retaining receptor family protein; Swiss-Prot: sp|Q86JE5|ERD2_DICDI ER lumen protein-retaining receptor; TrEMBL-Plants: tr|I3SZ51|I3SZ51_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0429100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92397442..92400819) extracted from Lotus japonicus Gifu genome v1.2.
AATGAAGGCAACCAAGAGACCGATCCACGCCCTGACCACATGGGTTCGGCGGCAGCCGCCCAAGATGAAGGCCTTTCTGG CGGTGGTTGCCGGCCTCGCAACCTTGCTCTTCCTCAGAATGGTGGTTCACGACCACGACAACCTCTTCATCGCAGCTGAG TTTGTTCACGCATTAGGAATTTCCCTCCTCATTTTCAAACTCACCAAGGAAAAAACTTGTGCTGGTAGGTACCATTTACC AAATCCAATTCCTTCATTCAATCGAATTTGGAATCATTTCTTATATTTCTTGAGCTGGTAGGTTCCAATCCAACCTCTCA AATTAGGGTTTTGATAGTTGGCCTTGTGGGTTATCATTACTCATTGATGCTCCTAAGAATCATGTTTCTGATATACATTG TATCTTTTGAGAGATTGACATTCATAATTTTCTTGCATGTACAATACAAGCAAGCTGCCAACCTAATTATTGTTTGAATC GGCTTCGATTGCTTGTATGCTCTGTTTTATACAATGTGCATGTGTGTTTTTCTAATCCTTATGAGACATGAAATAAAGAA AAAAGTTGATTTTTGGTATTGGTAAGTTATTCCTAAAGTTGTGTTCTTGTGTGTTTTATTCTACATTTGGGAGTCTCAGG ATCATTTTTCCATGGATTAGAATCACTTTTAAACAATTACTATATAGACTTTTGACAATAAAAAAATGATTTTACTCCCA AAATCAATTCAGCAGATAAGCTAGAGCTCCGGCAGACATAGTTGATTGTGTGATTTCATAACTGAATATAATAGAAGTCA CTTTTCTGATAAACTTATCCAAACATGAATCACTTTATTTTCACCTCACTTTTACTACAATCAATTTTATCCAAAATCCA TTCTGATAACGCTGATTAAAACATGAAGCTCATCTGTGGCGCCCACTGCATGATATCCTCCTTTGATTTGCAAACGTTTT CTTGCTAACTGTCATGCATTTCCCTATTAAATTGAAGTACAGAACAAGTAGCTATGTTTCTAACAAAGAAATGAGAAGAG TGTTATCTTCTATCTATTTATCTTTCTAATATTTTTGCATGTAACAGCCAGGTTTATAACTGTGTTTTAAATCATTGCAG GACTCTCACTTAAATCACAGGAACTGACGGCTATGTTTCTAGCTGTTAGACTTTACTGCAGTTTTGTCATGGAATATGAT ATACACACCATACTCGACACGGCAACACTGGTGACGACCCTCTGGGTTATTTATATGATGCGCTTCAAACTGAAATCCAG TTATATGGATGATAAGGACAACCTTCCAATATACTATGTGGTAAGTACTCTGTCTTGTAGATAAGGTATGTGTCTTCTTG CAGATTAGGCTATTAGCTATATCACACCCTTCATTAATTTTCACTTGGGCCTCATTTTAAGCATCTCAACAATTCTCGTA TTGGATTTCTTCAACAATCTAATGTCTAATAAAGTTTTAATAAGAAGCTTTCCTCTCATGACATGAGAGTAGCATCAGAA TCATGGTAATTAGCCCCTATCAGCTCAATTGGTACAAGACTTGCATGCCTAAGATTCTGAGCCTGTAGGTCCTGGGATCA AATCTTGGAAGGTAAAGTACTTGCGTGTGGGGGAGAGGAAGTTTCCTATGCTTATACTGCGAGGTAAACCTTGGTGCATG TGTGGACCAGCTAAAAGCCAAATCCTGAGTGTTATAATATTTTTTCCTGCAAACTTGTTTGGTTTTGTTGCCTGTTCACA AACAGATAGCCACAAGTCTTGTTGTGAGAAAGGTGATTTGGAATAGTGCTTGTTATAATTTCTTTTTAAAATCTTTATTT GAAGAATCACATTTTTTAAATCTCTCAAAATGATTCAAGGTAAAAGAAACTTTATCCATCTTATCATATTGACATCACTA TTGTTCTCTGTTTTTCCTTTTACTAGTGAATTTCTGAGATGAAAATGTGTTAGTTTCATACACAAGTCACCAACTTTAGG CCCGAAGTGAAAGCACCATTCTCATAAGAATTTATCTTTGATGTGTCTAAATGAATGAACGATCCATTGCTCTACATATG GAGTATTTTAAATTTTCTTTCACCAAAATGCAGGTGATGCCTTGTGCTGCGCTCTCCTTGCTTATTCATCCAAATACCCG CCATAATCCAATTAACAGGATTCTCTGGGGCTTTTGTGTTTACCTTGAAGCTGTATCAGTTCTCCCTCAGCTGAGGGTCA TGCAGAACGCTAAGGTCTCTTAGAAATATAGTTTGGCCCTTCACTTTTTCTTTACTATCTTTTAATTGTATGATGTATGT TGTCATTACATCTTCCTTTGCCAGTTAGGCTTTCTTAAAACAGTTATAGCTGATACTTTTCAACTTTCAGATTGTTGAAC CATTCACAGGACACTACGTTTTTGCCCTTGGAGTTGCAAGGTTCTTGAGTTGTGCACATTGGGTCCTCCAGGTTTGTAGA ATTTTAACCCATAAGATGTTAATTTCACCCAATTCTGAAAATAATCAGAACTATTTTATCCTAATATCCGGATATTTAGA AGTATCGTGATTTTCTTTTTATATATAACTTCGGGTTACGCATGGTTTATCAGAAATCATTGATCTAGTATTTCTGTATG ATACTCCTGCTTCAAACTATTGTACCACTAGATGGTAGTGTTTTGTTCATGCCTTCTTATATGAGTTGATCACCGCAATT GCGGTAAAGGGTTTTGGTGTTCCTGCAGTTGCAGCCGCATCAACCCGCATTTGTCTGCAAAGCTGCGGAACTGCAACCGG AGTTTTAAACTCTGAGTTGATGCATGCAAATATTCCATCAACATCTTTGGCTTGCCCGTTATATTTTTACCGTGTCAACC TTCCATTTCCGATGATAGATAGACCAAGCATGTACTTTATCTAAGAGACTAAATGTTTGTAGTGTCAGCTTCTCTTTTTC ATAATCAATTTAGGCACATAGAAGTCACTTCCATCAGTTTCTCCTCTGAAGTGATTTTGGCTTCAGAATCAATTATATAA GAATTTTCAAACATGCATTAAGGCAATGTCTATGTTATCTTCTGCAGGTATTAGATACTCGCGGCCGTCTACTAACTGCT TTGGGTTATGGATTGTGGCCTTCTATGGTACTTCTATCAGAAATTGTCCAAACTTTCATCCTGGCTGATTTTTGCTACTA CTACGTCAAGAGGTGGATGACAAATTCCCTGAATATTCAACATACATATTTTTTTTTGTCAAAATTCAACATACATTTTA ATACACTTTTCTCAGCTTTCTAACCTTTTATTTTGCCTCTTGGCTGCAGCATCTTTGGCGGACAACTTGTTGTAAGGCTT CCTTCAGGAGTGGTGTAA
CDS sequence (LotjaGi1g1v0429100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCAACCAAGAGACCGATCCACGCCCTGACCACATGGGTTCGGCGGCAGCCGCCCAAGATGAAGGCCTTTCTGGC GGTGGTTGCCGGCCTCGCAACCTTGCTCTTCCTCAGAATGGTGGTTCACGACCACGACAACCTCTTCATCGCAGCTGAGT TTGTTCACGCATTAGGAATTTCCCTCCTCATTTTCAAACTCACCAAGGAAAAAACTTGTGCTGGACTCTCACTTAAATCA CAGGAACTGACGGCTATGTTTCTAGCTGTTAGACTTTACTGCAGTTTTGTCATGGAATATGATATACACACCATACTCGA CACGGCAACACTGGTGATGCCTTGTGCTGCGCTCTCCTTGCTTATTCATCCAAATACCCGCCATAATCCAATTAACAGGA TTCTCTGGGGCTTTTGTGTTTACCTTGAAGCTGTATCAGTTCTCCCTCAGCTGAGGGTCATGCAGAACGCTAAGATTGTT GAACCATTCACAGGACACTACGTTTTTGCCCTTGGAGTTGCAAGGTTCTTGAGTTGTGCACATTGGGTCCTCCAGGTATT AGATACTCGCGGCCGTCTACTAACTGCTTTGGGTTATGGATTGTGGCCTTCTATGGTACTTCTATCAGAAATTGTCCAAA CTTTCATCCTGGCTGATTTTTGCTACTACTACGTCAAGAGCATCTTTGGCGGACAACTTGTTGTAAGGCTTCCTTCAGGA GTGGTGTAA
Protein sequence (LotjaGi1g1v0429100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKATKRPIHALTTWVRRQPPKMKAFLAVVAGLATLLFLRMVVHDHDNLFIAAEFVHALGISLLIFKLTKEKTCAGLSLKS QELTAMFLAVRLYCSFVMEYDIHTILDTATLVMPCAALSLLIHPNTRHNPINRILWGFCVYLEAVSVLPQLRVMQNAKIV EPFTGHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFCYYYVKSIFGGQLVVRLPSG VV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 112 | 112 | 8.4E-139 | ||
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 112 | 112 | 8.4E-139 | – | |
| Phobius | 24 | 42 | 19 | - | – | |
| TMHMM | 24 | 43 | 20 | - | – | |
| Phobius | 43 | 47 | 5 | - | – | |
| TMHMM | 48 | 65 | 18 | - | – | |
| Phobius | 48 | 68 | 21 | - | – | |
| Phobius | 69 | 79 | 11 | - | – | |
| Phobius | 80 | 98 | 19 | - | – | |
| Phobius | 99 | 103 | 5 | - | – | |
| Phobius | 104 | 122 | 19 | - | – | |
| Pfam | 109 | 184 | 76 | 6.5E-22 | ||
| PANTHER | 111 | 242 | 132 | 8.4E-139 | – | |
| PANTHER | 111 | 242 | 132 | 8.4E-139 | ||
| Phobius | 123 | 133 | 11 | - | – | |
| Phobius | 134 | 151 | 18 | - | – | |
| Phobius | 152 | 162 | 11 | - | – | |
| TMHMM | 163 | 185 | 23 | - | – | |
| Phobius | 163 | 184 | 22 | - | – | |
| Phobius | 185 | 204 | 20 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 205 | 225 | 21 | - | – | |
| Phobius | 226 | 242 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi1g1v0429100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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