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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0431200 |
| Transcript ID | LotjaGi1g1v0431200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | La-related; TAIR: AT4G35890.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94K80|LRP1C_ARATH La-related protein 1C; TrEMBL-Plants: tr|A0A151RUU0|A0A151RUU0_CAJCA La-related protein 1B; Found in the gene: LotjaGi1g1v0431200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92616619..92621188) extracted from Lotus japonicus Gifu genome v1.2.
ACAAAATATAACGTGTAAAATTAGGTTTGGTAACAGAGAAACCTTGCCCCTTGCCCCTTGCCCCTTGCCCCTTGTTCTTG TTCTGCTGTAGTGATTTTGTGAGTCAGGAGCGGAGGAGAGGGGAAGAGATCCCAGTTTTTCTGTTTAGAGCCGGAGGAGC AACCTTCTTCTTCTTACCTTTATCACTTCCCCTGCCCCTATTCTAACTATATAAACCCTAATATGTTTTTTCATTGATTT ATTAACATGCTCTTGATTATACACTGATCAATCATCTTTATCAATCCTTATTCACCACAAACCCTAATCAGCAAATCGGC AATGGTTATCGCAGCCGATTCTTCTTCCCCTAACACTACTACTGCTGCCGCCAACAACAGCCCGCGAAAAAACCTACCTT CTCCCTGGGCCCAGGTCGTTCGCTGTGCCGACTCAGAGCCACTCCTCCACCAATCGCTGCCTTCATCATCTTCCTCTACC TCCTCCTTGTCCGCTGATTCCGATAGCTCCGATGCTGATAAGGCGAAGAACGCCGGTGCCCCGAAGAAACCCGCTTGGAA GATGCCACCCAGTGACGTCGCCGAGGTTAGTCCTGTAATGGGTGCTGTGTCTTGGCCCGCTTTATCTGAGGCCGCCAAAC TTTCTGTGAAACCAACATCTGACTCCTCCACAACCGATGGATCACTCTCCACTACTCAGGTTAGGTTTCCATATCATATC ACCCCTGATTGGGGAAAAATAAGAAATTTGATTTGTTGTCTTTAAATTTTGTTTGTAATATGATAGAAGAACAAATTTAT TGAATAGTCTATAAGTATTAGGTTCATTGTTCATTGTTTATACTTCATGGTGTAATTTATTTGTTCCTGCATTTGATATG TGGTGGTAGAGAAAGAGGAATCATATGTTTATGGAAATGGTGGTGACTGGTATGTTGGTCTTGCATGGATTTTGCTATTG TTTTGTAGGGGCCTGTTACTCCACACTCCCCTCAGACACAAGCTAATAGCAATAGCAATGTGAAACCTAGTCCTGCAATG AACACTGATATGCCTAATAGACAAAGATCGACAAAGCAGGGAGGCAGCAATAGCAATGGGCCTGCTCCTGTGCGGGGTAA CTTCACCAACACTGCCCCGAATCTTTCACCATCACCTCCCCTGCCACCACCACCACCTTTTCCTGTGCTTCAGATCCCTT CCAGTTCCTTTACCAATGGGGTTCCGGGCCCTTCCCCAAGAGATCCTTTCAGGAACAATAACTGGGATACAAGATCACCA GTTGGGGGTTTTGGGCCACCCATGAATGAACAAAGGAGTCCTTCCCGTAGGGGTAATTTTGGGCACCATCCACGAGGAGG TAATGGTTCACATCATAATAATTATGACAACAGGCGCGATCAGGAACGTTTAAATTATGCAAATTCTAGAGATGCCCGTG CACCCCAGCAGAGGATGTCTCCACGGGGATTGATGAGGTTCCCGCCACCTAATGCTGCTCCTCCATTTATGGGGCCTCAA CCACTGCAACCCTTTCTAAACCCTGCTGGGTTTCCTGGTGAGTTTATCTCTGTATTATTCAAATGTATTTTCACTACAAA ACACGACTGATGTTATATCTCATTTCATTTTTAGAATTTTACTATTTTCCAACACTTCAATTGGAATCTTTTGGGCGTAT GCCATTCTTCACGCATGCACCTCCTCCTGCAATGTTCTTCCCCGTTGCTGAAACTCCCTTGACCGATGTGATTATAAAGC AGATTGATTATTATTTTAGGTATTTTATTTTGTTTTCAGTTATTTAGTTTGTTAACTAATGCTTGACGGCTGAATTTTCT TTTTGATGTTTGTTTTTTACAGTGATACTAATTTAGTGAAAGACAACTATTTAAGGTCAAACATGGACGAACAGGGTTGG GTTCCAATTACTTTGATTGCAAACTTCCCTCGAGTAAGTTAATTGTGCTTGATCATGCATTGTCATTCATTATATTCAAT AAAAAATTCTTTCTGATGAGCCTTTAGTTTTTGATATTTTGTCAATTGTATGGTTGATTAATTTTAGCCTTTTAGGCATG TACTAGTCATTTGCTTTCGGTGTATTTTTTAATGGATTGTTACCTTTGAGGATTTTGCTGTTTTATAGCCCATCAAAATT TGCTATTATAGATGCAGTTATAGCGGTTGAAATTGAAAGCAAACAAATATGTGGAGCTGGGAAAATACAATGAAAAATTG GGGTTTATTGTGTTATTCTGTTTAGTTGCCTAACTTTTATTGTTGTAATCAATTTAGAGAACGCACACTAATTGAGATTT TAACTGTTAAGATTAATGTATATGTTGTGAAATGATCATGGATTATTATGTTACCAGTAGTAGTGTACTTTTTGTATTTA TATTGTTATTTAATTAAACTTTCATACTAAATATCTTAGGTTTGTTTATGTTCTAAAAAAAATATATTCTTGCAGGTTAA AAGTTTGACAAGCAACGTTGAGTTGATTCTGGATTCCTTGAAAACTTCCTCTGTCGTGGAAGTGCAGGTAAAATATTTTT TTATTGTATTTTTTTCATGCAATGGAAGCATGTTTGTAGTATATTTTAATAGTCCTTAAGTCATTCAATTTGTTGTATTT CTTATCTTCAACGGATGCTACAGGGTGACAAGTTGAGGAAGCGTGATGATTGGATGAAGTGGCTGCCCTCCACCCAACGT GAGGTTGATTCTAGTTCAATGTCCACTGGTGAATCAAATTACAATAACATAGCTCGTGATTTTGAAAAAATAACTCTGAA TGAAGCACTTCTAGATAAAGTTAATTCTGATCCTACCACAAATGGGGAGGCTATAGAATCTTCCGATCAGTCTCAATTCA CAATTGGTGATGCTGCAAAGAGTTGCAATTAAAACTCACTCAATAGATCCGCCCCATCCCAAAATACTTACCCCATTCTA GTATCCAACTGTGTGAGTGATTTTTGATTTACATTTTTTTGAAGGGATGGTAGATAGGTTGTTCAAAAGTTTGTTTCCTC CCGATAGTCACCAAGGTCGATTCTGGTGGTAATTTTGAGTCAAGAAGGGAAAGAAATAAAAGATTTATTGAATTATTATG GTTTTATAGATGAAAAAGAGTTAACGAGACATAGCAGAAATCTGGAATTTTAATTCAGGCTCATTTATTGAGTTTTTGGT TTTGTGGATTATATTTAGTTATTTACTAAAACTTATTTATATATTGCTGATGGTTTATGGGTTGTATCTTGTATGTGTGA ATGAAGTAGATAGGCGTTCGTGATGTTGTGTGCTCATGCAAGTAGTTGGTAGCTTGTTTGGCAGTTTATCCTGTTTGGCT GTTTGTACATCTGGCTTAATTTTGTATTTTCTTGTTTGAAGCCTATTTCTCCACTTTGTTTCAACAGTTTTTTTCCCCCT ACATATCCAAGTAGAAGTTCATTTGCTGATTTGCATTATAGTATGTTTTGTTTCACATTTAAACTTCATAGAAATTAGAA TTACTTCTTCTGCATTTCCATAATTACTTTTCTCTTTAACATGAAAATCTGCTGAATTTTGAGGCACATAGTGGTTTTTC CTTTCATCCCATACCCCTATCCGGGATTCCCCCAATCATAATTTATATGTGTTGCTATCAAGGTTGTTCATGATAAGAAA CATGTATTCCACCATATTTAAGTACCATATGGCTGTAAATTGTAAGTTGCATGTTATACTTCCTTTTATCCTCTTCTATA TTCTGTGCAGCAGGTTTTTGGTGAAAAGCATTCATTGTTTGTTGTGTTTGTGGTCCTGGACTACGGCAAATTGGCTATCA GAGTATCAGTTAGAAGGACCATTGAACCATATGATCATAAGAACCAAAAAAGAAAAAAAGTACGTGGTAAGCTCAAACCA TGAAGTCACCTAGGACTTGGAGCTGAATTAAGGACTTGGAGTATTAATATATAAATAGCATTTTCTTTAATTAATCAAAC ATTCCAGAAAATGTGAACTACTTTACATTCTAGCATATAGGGTTAGACATTTTTTTCATACTTTACATTCTTGGTTTTTT ATTAGTTTTTCATTCTTGGTTTTTGATTTTGATTTAGTTTTTTTTTCTTGATTAAGTCTCCACGAATTATTGTTAATTGA AGTTTTTTTCTCATTCATTGTTTTTGTAACCCTCTGAACATCAACTTTAAGTCTTCAACTAATAGTTATGCCGTACCAAA AAAAAACTAATAATCACGAATGAATAAAATAATTAAGTAGAATAAAAAATGGAACTCGAAATAAGTCTTTGGCTAATTAG CTTCATGCTTCTCTTTATGTTTCTAATATAATAGGCATTGGTTCTCATAATCCTTTATTAGTTTATTTCAAATTGCCAAA CCTCCTATTTTTGCCATCGATATACTCTCCCCGGGGTCCCCCCTAAAGCAGCAATGTGATAGCATAAAAAATGATAGTGT CAGCTACATGATAGATTCTTCACCTTATGCTCTACACCATCATGGACTTTGCAAGAAATAATTCATAGTTCTTGGCTTCT TGCACAAGCG
CDS sequence (LotjaGi1g1v0431200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTATCGCAGCCGATTCTTCTTCCCCTAACACTACTACTGCTGCCGCCAACAACAGCCCGCGAAAAAACCTACCTTC TCCCTGGGCCCAGGTCGTTCGCTGTGCCGACTCAGAGCCACTCCTCCACCAATCGCTGCCTTCATCATCTTCCTCTACCT CCTCCTTGTCCGCTGATTCCGATAGCTCCGATGCTGATAAGGCGAAGAACGCCGGTGCCCCGAAGAAACCCGCTTGGAAG ATGCCACCCAGTGACGTCGCCGAGGTTAGTCCTGTAATGGGTGCTGTGTCTTGGCCCGCTTTATCTGAGGCCGCCAAACT TTCTGTGAAACCAACATCTGACTCCTCCACAACCGATGGATCACTCTCCACTACTCAGGGGCCTGTTACTCCACACTCCC CTCAGACACAAGCTAATAGCAATAGCAATGTGAAACCTAGTCCTGCAATGAACACTGATATGCCTAATAGACAAAGATCG ACAAAGCAGGGAGGCAGCAATAGCAATGGGCCTGCTCCTGTGCGGGGTAACTTCACCAACACTGCCCCGAATCTTTCACC ATCACCTCCCCTGCCACCACCACCACCTTTTCCTGTGCTTCAGATCCCTTCCAGTTCCTTTACCAATGGGGTTCCGGGCC CTTCCCCAAGAGATCCTTTCAGGAACAATAACTGGGATACAAGATCACCAGTTGGGGGTTTTGGGCCACCCATGAATGAA CAAAGGAGTCCTTCCCGTAGGGGTAATTTTGGGCACCATCCACGAGGAGGTAATGGTTCACATCATAATAATTATGACAA CAGGCGCGATCAGGAACGTTTAAATTATGCAAATTCTAGAGATGCCCGTGCACCCCAGCAGAGGATGTCTCCACGGGGAT TGATGAGGTTCCCGCCACCTAATGCTGCTCCTCCATTTATGGGGCCTCAACCACTGCAACCCTTTCTAAACCCTGCTGGG TTTCCTGAATTTTACTATTTTCCAACACTTCAATTGGAATCTTTTGGGCGTATGCCATTCTTCACGCATGCACCTCCTCC TGCAATGTTCTTCCCCGTTGCTGAAACTCCCTTGACCGATGTGATTATAAAGCAGATTGATTATTATTTTAGTGATACTA ATTTAGTGAAAGACAACTATTTAAGGTCAAACATGGACGAACAGGGTTGGGTTCCAATTACTTTGATTGCAAACTTCCCT CGAGTTAAAAGTTTGACAAGCAACGTTGAGTTGATTCTGGATTCCTTGAAAACTTCCTCTGTCGTGGAAGTGCAGGGTGA CAAGTTGAGGAAGCGTGATGATTGGATGAAGTGGCTGCCCTCCACCCAACGTGAGGTTGATTCTAGTTCAATGTCCACTG GTGAATCAAATTACAATAACATAGCTCGTGATTTTGAAAAAATAACTCTGAATGAAGCACTTCTAGATAAAGTTAATTCT GATCCTACCACAAATGGGGAGGCTATAGAATCTTCCGATCAGTCTCAATTCACAATTGGTGATGCTGCAAAGAGTTGCAA TTAA
Protein sequence (LotjaGi1g1v0431200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIAADSSSPNTTTAAANNSPRKNLPSPWAQVVRCADSEPLLHQSLPSSSSSTSSLSADSDSSDADKAKNAGAPKKPAWK MPPSDVAEVSPVMGAVSWPALSEAAKLSVKPTSDSSTTDGSLSTTQGPVTPHSPQTQANSNSNVKPSPAMNTDMPNRQRS TKQGGSNSNGPAPVRGNFTNTAPNLSPSPPLPPPPPFPVLQIPSSSFTNGVPGPSPRDPFRNNNWDTRSPVGGFGPPMNE QRSPSRRGNFGHHPRGGNGSHHNNYDNRRDQERLNYANSRDARAPQQRMSPRGLMRFPPPNAAPPFMGPQPLQPFLNPAG FPEFYYFPTLQLESFGRMPFFTHAPPPAMFFPVAETPLTDVIIKQIDYYFSDTNLVKDNYLRSNMDEQGWVPITLIANFP RVKSLTSNVELILDSLKTSSVVEVQGDKLRKRDDWMKWLPSTQREVDSSSMSTGESNYNNIARDFEKITLNEALLDKVNS DPTTNGEAIESSDQSQFTIGDAAKSCN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 1 | 85 | 85 | - | – | |
| MobiDBLite | 42 | 61 | 20 | - | – | |
| PANTHER | 46 | 498 | 453 | 1.5E-150 | – | |
| PANTHER | 46 | 498 | 453 | 1.5E-150 | – | |
| MobiDBLite | 103 | 267 | 165 | - | – | |
| MobiDBLite | 108 | 184 | 77 | - | – | |
| MobiDBLite | 185 | 201 | 17 | - | – | |
| SUPERFAMILY | 349 | 441 | 93 | 2.18E-28 | ||
| Gene3D | 351 | 443 | 93 | 4.9E-32 | ||
| ProSiteProfiles | 352 | 441 | 90 | 26.648 | ||
| SMART | 356 | 434 | 79 | 7.3E-28 | ||
| Pfam | 362 | 417 | 56 | 6.1E-23 | ||
| CDD | 362 | 432 | 71 | 1.50344E-33 | – | |
| MobiDBLite | 479 | 507 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0431200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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