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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0431400 |
| Transcript ID | LotjaGi1g1v0431400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome regulatory subunit; TAIR: AT1G20200.1 PAM domain (PCI/PINT associated module) protein; Swiss-Prot: sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3; TrEMBL-Plants: tr|I1K7H0|I1K7H0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0431400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92636379..92640580) extracted from Lotus japonicus Gifu genome v1.2.
TTATCAACACGAAAAAACGATGCGTTTTAACCTTCAGAGAGAGAGAGAGAGAAAACATGTGTGCCTACTGAGTGACCGAT TGCTTCCTTCTTATTGCTTCTTCAGTTTTCATTACTTTACTTTGTAGATCAGAGTTAGGGTTTGCTGGGATTTCAATCGA TTTCATCGAAGATGACTCAAGATCTTGAGATGAAGGATCGCTCAACGCCTTCAAACTCGGTTTCGACGCCTGTTCCTTCT ACTCTGCACCGTAAGAATCTTGAATCTTCCTTCAACTACTACTACTCTAACCGTTTCAAATTTCTGTCAAATCATCGTTT CTACTGAAATTAACTTTTTGGTTTTTGATCTGGGTATCGCAGATTTGAAGGAGATAGCTTCACTCATTGAGACCGGTTCT TACTCGAAAGAAGTTCGGAGAATTGCGCGTGCTGTTCGCCTCACAATTCAATTGAGGCGCAAATTGACTGCTTCGATTAT CTCGTCTTTTCTCGATCATGTTCTCACTCCCGGTTCTGAGGCTCATGCCAAATTGTCTGCTTATCTTCCCAAGGTAACTT CCATTGTTAGATTCAGGGGCTGTTGCTGTTGAAAATAGTTTCAGATTTCAATTTTGCACTTGTCATCTGCTTATTGTAAT TTAATGTATGAAGGGGATGAATATAGTTGGGTGTTTTTGGCTGATGTGAATGAATTATTCCTCTATAGAAAGTATATGTT TTAGTCACTTAGGTCTATTGTCGAAACTCGAATGCACAATTTACCCCATTTTCTTCCCATGGCACAACTGATATAAGTAT ATAACTTGATAGATATTGACCCTGATTAGCTATGCATGTGTGGAAGATTCATATAATTTTACGAGTGGGAACTTGATGAG GGTGGAAGCACATTATTTGATGCTCTCTCTCTCTCTCTTGTGGCTATATTTACCTGGGAAATGTTGGATTGTTTCCTTGC TATGCTTTTACTGTGTATTGAATGGTCTTTGAAGTCATGAATTTTTTGAATGATTACACAGGAGGATGATCATGAGATGG AAGTGGATGCTGCAACTTCTGCTATTCAAGCAACTTCTGCTATTCAAACACCGGCCAAACATTTGCTTCCTGAGCTAGAA ATCTACTCTTACCTTCTTGTATTACTTTTTCTGATTGATCAGAAAAGATACAATGAGGTCAGTTCCATCTTACTTGTATT TTTTTGCTGCACCAACTATTAACTGATTATATATGCTTAAGCTGCTCTATTTTTTCGTTTCAGGCCAAAGCCTGTTCCTC AGCTAGTGTTGCTTGGCTGAAGAACGTGAACAGAAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCTT ATAGCTATGAGCTCACGGGTGATCTTGCTGAAATTCGGGGGTGAGTGTGGTGCTTATCTATGTATTAAACAAATCAAAAT TGTTAAAAATTCAATTATTTTTAAGTAACACATTTTAACAAAACTTTGTGTTTCATCTTTTCAGCAATCTCCTTGCTTTG CACCGGATTGCCACCCTGCGTCATGATGAGTTGGGTCAGGTTTGTTTCATCTTAGAACTTACACAGAGGTTTTTTTAAGT AAAGGCTTATGCTGTTGTACTTACCTGTTGATGCAATGCAGGAAACCCTTCTTAACCTGTTACTTCGCAACTACCTTCAC TACAATCTATATGATCAGGCGGAGAAGTTAAGATCTAAGGCTCCACGGTTTGAAGCACATTCAAACCAGCAGGTATGGTA GTTTTATTAACCTAAGCATAGAAAAAAAAAGTTTCAATATCAATGGTAGATAATCTCTGTGGGAATGCTGAATCATTTAC TGATTAAGTATTATAATTTTGTATCTATTATAGTTGATTGTTGTTAAAAGTCTTTTTTTAATTCGTTTCCCTTCACTTGT CCATATTTTTGTCAGTTCTGTCGCTATCTCTTTTACCTTGGGAAGATTCGGACGATTCAGTTGGAGTACACCGATGCGAA GGAATCTCTTCTGCAAGCTGCTCGGAAAGCTCCAGTTGCAGCACGGGGTTTCCGAATTCAATGTAACAAGTGGGCTGTGA TAGTGCGTTTACTGCTGGGAGAAATACCTGAGCGGACTGTCTTTATGCAAAAAGGAATGGAGAATGCTCTGAGGCCTTAC TTTGAGCTTACTAATGTAAGTTCACTTATGATCCAAATGAAATATTTTCCTACCTAGTTCTAATGTCATTGTAATTTATT CAGCCTCCCTATATCTCTCTTAATCACAACAATTGAACTCCTGTATTTTGTATAATTATAAATTTAGACATCCTGTTTGT TCATCATGTGGTGATAGGTTGCGTGCCTTCCACTCTTTTGTCTTGGAAATGTTTTAGCCATTTTATTCTAATTCGGGAAT CACTCTACTTTTAGAAATTATAAAGAGGGAAATCAAATAACAGAAACTTGGATAAATTGTATGTGTAGTGATTCCCAACA ATGACCAAATCCTTTTTCCTACTATGCGTGGTCTGCTGCAAGGATTACCATAATGAATTGTCGTGAATCAAGTCTAATGA TAGGCCATTTAAATCTAAATCTCTCTTTTTAGTTTGATGTATTATTATTCTTTGTCTCTCTCTAAATATAACTATTTGAC TATCTTCTATCTTATCCATCCTTCTTATCGGTGCTTTTACAAATCCTCTCTATACATGTGCAAACCACCAAATATGAAAC TTTTATTTCTCTTTTACAGTTACAATAAATTTTGGGTACATAGGATTGGAACTATTGACCTCTTAACCGGTAAACGATGT TGAAAATGATATTAATATGTAACCACTTCAGTGATGATTGTTTCTAAACAAAAAATATTCTTACTGAAAACTCCCTTGTA TTTCTCCTTATGTTTTTAATATAGCTCAAGGTCATCGTTAGTGGTCAAGATCTCGCAAAACTAGGGTCTGTATCAAAACA CAATTTTATGCATTTGTTGAGCCTTTGTTCAATCTTTGATAAATTCTCTATTTTTATCATAATTAGTTTTTTTTATTTAT ATTCATAGTAATGTTATTTGCTGAACTTCTCTGTGGTAGTGATACTACTTATGTTGTGGAATTTCAGGCTGTCAGGATTG GAGACTTGGAGCTTTTTAGGAATATTGCAGACAAATTCGCTACCACCTTCAATGCAGACGGAACTCATAATTTGATTGTA CGCCTGCGGCACAATGTCATCAGGACTGGTTTACGTAACATCAGCATCTCATACTCCCGCATCTCATTGGCAGATGTTGC TAGAAAATTGAGGTTGAACTCTGCAAGTCCCGTTGCTGATGCTGAGAGCATTGTATCAAAGGCTATCCGTGATGGGGCAA TTGATGCTACATTGGATCATGCAAATGGTTGGATGGTCTCTAAGGAAACTGGAGATATTTACTCCACCAATGAGCCTCAG TTGGCTTTCAATTCTAGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTGCGAGCCCTGCGTTTTCCGCCGAACAC ACACAAAGAAAAGGAAAGTGCTGAGAAGAGGAGAGAGAGGCAACAGCAAGAGCAAGAACTAGCTAAGCATATTGCAGAGG AGGATGATGACGACTTCTGATAATGGTCTTTCTTTACAGTTTGTTTCCATTCTGCTCTGAAGTTTTATTATTTGAATGTT CTACTCTGAAGGATTTGTCATGATAATCTTTTTTTCTATCTGAGCGATACATTCCTAGGCAGTCAGATGAGACTCTCCTT TTCTTATGGAGGAGATATGGGGTTGAAGACCATCTCTTGACAGCATGATTCAGTTACATTACCGTGTGTTCTCTTAACAT GATAATCTTTTTTTAGTTTTCTTAATCATCTCGTTTAGTTTATACCTTTGTGTGTGATTGTATTTAGTTCATTCTACCAA ACATCGTTACTCCTTTATTTTTGTTCTTCGTCATATTTATTGGGTTTCTTTTGTATCTTTCCCTTTCAAAAGGTTTAATT GAAAGTAAGGTAGAAGATTGCAGTAAGATTTGTTAACCGTTTTGTGATACACCTTGCGCCACACTAGGTTAAGATTTTTT ACTATTAACCAAGCATTACAAATGAGCCAAACGGTCGTCATCTCCAAGCTCTTACAAGTGGTATATGGATCCGCTTCCTC ATTACTTACTTCTTTGGTCGAAAATTACGAGGTTTCTTTTCA
CDS sequence (LotjaGi1g1v0431400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCAAGATCTTGAGATGAAGGATCGCTCAACGCCTTCAAACTCGGTTTCGACGCCTGTTCCTTCTACTCTGCACCA TTTGAAGGAGATAGCTTCACTCATTGAGACCGGTTCTTACTCGAAAGAAGTTCGGAGAATTGCGCGTGCTGTTCGCCTCA CAATTCAATTGAGGCGCAAATTGACTGCTTCGATTATCTCGTCTTTTCTCGATCATGTTCTCACTCCCGGTTCTGAGGCT CATGCCAAATTGTCTGCTTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGATGCTGCAACTTCTGCTATTCAAGC AACTTCTGCTATTCAAACACCGGCCAAACATTTGCTTCCTGAGCTAGAAATCTACTCTTACCTTCTTGTATTACTTTTTC TGATTGATCAGAAAAGATACAATGAGGCCAAAGCCTGTTCCTCAGCTAGTGTTGCTTGGCTGAAGAACGTGAACAGAAGA ACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCTTATAGCTATGAGCTCACGGGTGATCTTGCTGAAATTCG GGGCAATCTCCTTGCTTTGCACCGGATTGCCACCCTGCGTCATGATGAGTTGGGTCAGGAAACCCTTCTTAACCTGTTAC TTCGCAACTACCTTCACTACAATCTATATGATCAGGCGGAGAAGTTAAGATCTAAGGCTCCACGGTTTGAAGCACATTCA AACCAGCAGTTCTGTCGCTATCTCTTTTACCTTGGGAAGATTCGGACGATTCAGTTGGAGTACACCGATGCGAAGGAATC TCTTCTGCAAGCTGCTCGGAAAGCTCCAGTTGCAGCACGGGGTTTCCGAATTCAATGTAACAAGTGGGCTGTGATAGTGC GTTTACTGCTGGGAGAAATACCTGAGCGGACTGTCTTTATGCAAAAAGGAATGGAGAATGCTCTGAGGCCTTACTTTGAG CTTACTAATGCTGTCAGGATTGGAGACTTGGAGCTTTTTAGGAATATTGCAGACAAATTCGCTACCACCTTCAATGCAGA CGGAACTCATAATTTGATTGTACGCCTGCGGCACAATGTCATCAGGACTGGTTTACGTAACATCAGCATCTCATACTCCC GCATCTCATTGGCAGATGTTGCTAGAAAATTGAGGTTGAACTCTGCAAGTCCCGTTGCTGATGCTGAGAGCATTGTATCA AAGGCTATCCGTGATGGGGCAATTGATGCTACATTGGATCATGCAAATGGTTGGATGGTCTCTAAGGAAACTGGAGATAT TTACTCCACCAATGAGCCTCAGTTGGCTTTCAATTCTAGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTGCGAG CCCTGCGTTTTCCGCCGAACACACACAAAGAAAAGGAAAGTGCTGAGAAGAGGAGAGAGAGGCAACAGCAAGAGCAAGAA CTAGCTAAGCATATTGCAGAGGAGGATGATGACGACTTCTGA
Protein sequence (LotjaGi1g1v0431400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTQDLEMKDRSTPSNSVSTPVPSTLHHLKEIASLIETGSYSKEVRRIARAVRLTIQLRRKLTASIISSFLDHVLTPGSEA HAKLSAYLPKEDDHEMEVDAATSAIQATSAIQTPAKHLLPELEIYSYLLVLLFLIDQKRYNEAKACSSASVAWLKNVNRR TVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHS NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMENALRPYFE LTNAVRIGDLELFRNIADKFATTFNADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVARKLRLNSASPVADAESIVS KAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQE LAKHIAEEDDDDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 493 | 493 | 1.1E-299 | – | |
| PANTHER | 1 | 493 | 493 | 1.1E-299 | – | |
| Gene3D | 236 | 366 | 131 | 4.7E-32 | – | |
| ProSiteProfiles | 245 | 426 | 182 | 26.427 | ||
| Pfam | 317 | 422 | 106 | 1.8E-22 | ||
| SMART | 351 | 444 | 94 | 4.0E-23 | ||
| SMART | 351 | 444 | 94 | 4.0E-23 | – | |
| SUPERFAMILY | 352 | 427 | 76 | 7.07E-9 | ||
| Pfam | 426 | 492 | 67 | 4.0E-27 | ||
| MobiDBLite | 457 | 486 | 30 | - | – | |
| MobiDBLite | 457 | 493 | 37 | - | – | |
| Coils | 460 | 487 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Proteasome complex | A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core. | ||
| Molecular function | Enzyme regulator activity | Binds to and modulates the activity of an enzyme. | ||
| Biological process | Regulation of protein catabolic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
Expression pattern of LotjaGi1g1v0431400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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