Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0431400.2

Overview

Field Value
Gene ID LotjaGi1g1v0431400
Transcript ID LotjaGi1g1v0431400.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 26S proteasome regulatory subunit; TAIR: AT1G20200.1 PAM domain (PCI/PINT associated module) protein; Swiss-Prot: sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3; TrEMBL-Plants: tr|I3S3W2|I3S3W2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0431400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:92636961..92639526) extracted from Lotus japonicus Gifu genome v1.2.

ACTTCTGCTATTCAAGCAACTTCTGCTATTCAAACACCGGCCAAACATTTGCTTCCTGAGCTAGAAATCTACTCTTACCT TCTTGTATTACTTTTTCTGATTGATCAGAAAAGATACAATGAGGTCAGTTCCATCTTACTTGTATTTTTTTGCTGCACCA ACTATTAACTGATTATATATGCTTAAGCTGCTCTATTTTTTCGTTTCAGGCCAAAGCCTGTTCCTCAGCTAGTGTTGCTT GGCTGAAGAACGTGAACAGAAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCTTATAGCTATGAGCTC ACGGGTGATCTTGCTGAAATTCGGGGGTGAGTGTGGTGCTTATCTATGTATTAAACAAATCAAAATTGTTAAAAATTCAA TTATTTTTAAGTAACACATTTTAACAAAACTTTGTGTTTCATCTTTTCAGCAATCTCCTTGCTTTGCACCGGATTGCCAC CCTGCGTCATGATGAGTTGGGTCAGGTTTGTTTCATCTTAGAACTTACACAGAGGTTTTTTTAAGTAAAGGCTTATGCTG TTGTACTTACCTGTTGATGCAATGCAGGAAACCCTTCTTAACCTGTTACTTCGCAACTACCTTCACTACAATCTATATGA TCAGGCGGAGAAGTTAAGATCTAAGGCTCCACGGTTTGAAGCACATTCAAACCAGCAGGTATGGTAGTTTTATTAACCTA AGCATAGAAAAAAAAAGTTTCAATATCAATGGTAGATAATCTCTGTGGGAATGCTGAATCATTTACTGATTAAGTATTAT AATTTTGTATCTATTATAGTTGATTGTTGTTAAAAGTCTTTTTTTAATTCGTTTCCCTTCACTTGTCCATATTTTTGTCA GTTCTGTCGCTATCTCTTTTACCTTGGGAAGATTCGGACGATTCAGTTGGAGTACACCGATGCGAAGGAATCTCTTCTGC AAGCTGCTCGGAAAGCTCCAGTTGCAGCACGGGGTTTCCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTG CTGGGAGAAATACCTGAGCGGACTGTCTTTATGCAAAAAGGAATGGAGAATGCTCTGAGGCCTTACTTTGAGCTTACTAA TGTAAGTTCACTTATGATCCAAATGAAATATTTTCCTACCTAGTTCTAATGTCATTGTAATTTATTCAGCCTCCCTATAT CTCTCTTAATCACAACAATTGAACTCCTGTATTTTGTATAATTATAAATTTAGACATCCTGTTTGTTCATCATGTGGTGA TAGGTTGCGTGCCTTCCACTCTTTTGTCTTGGAAATGTTTTAGCCATTTTATTCTAATTCGGGAATCACTCTACTTTTAG AAATTATAAAGAGGGAAATCAAATAACAGAAACTTGGATAAATTGTATGTGTAGTGATTCCCAACAATGACCAAATCCTT TTTCCTACTATGCGTGGTCTGCTGCAAGGATTACCATAATGAATTGTCGTGAATCAAGTCTAATGATAGGCCATTTAAAT CTAAATCTCTCTTTTTAGTTTGATGTATTATTATTCTTTGTCTCTCTCTAAATATAACTATTTGACTATCTTCTATCTTA TCCATCCTTCTTATCGGTGCTTTTACAAATCCTCTCTATACATGTGCAAACCACCAAATATGAAACTTTTATTTCTCTTT TACAGTTACAATAAATTTTGGGTACATAGGATTGGAACTATTGACCTCTTAACCGGTAAACGATGTTGAAAATGATATTA ATATGTAACCACTTCAGTGATGATTGTTTCTAAACAAAAAATATTCTTACTGAAAACTCCCTTGTATTTCTCCTTATGTT TTTAATATAGCTCAAGGTCATCGTTAGTGGTCAAGATCTCGCAAAACTAGGGTCTGTATCAAAACACAATTTTATGCATT TGTTGAGCCTTTGTTCAATCTTTGATAAATTCTCTATTTTTATCATAATTAGTTTTTTTTATTTATATTCATAGTAATGT TATTTGCTGAACTTCTCTGTGGTAGTGATACTACTTATGTTGTGGAATTTCAGGCTGTCAGGATTGGAGACTTGGAGCTT TTTAGGAATATTGCAGACAAATTCGCTACCACCTTCAATGCAGACGGAACTCATAATTTGATTGTACGCCTGCGGCACAA TGTCATCAGGACTGGTTTACGTAACATCAGCATCTCATACTCCCGCATCTCATTGGCAGATGTTGCTAGAAAATTGAGGT TGAACTCTGCAAGTCCCGTTGCTGATGCTGAGAGCATTGTATCAAAGGCTATCCGTGATGGGGCAATTGATGCTACATTG GATCATGCAAATGGTTGGATGGTCTCTAAGGAAACTGGAGATATTTACTCCACCAATGAGCCTCAGTTGGCTTTCAATTC TAGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTGCGAGCCCTGCGTTTTCCGCCGAACACACACAAAGAAAAGG AAAGTGCTGAGAAGAGGAGAGAGAGGCAACAGCAAGAGCAAGAACTAGCTAAGCATATTGCAGAGGAGGATGATGACGAC TTCTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0431400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAAAAGGAATGGAGAATGCTCTGAGGCCTTACTTTGAGCTTACTAATGCTGTCAGGATTGGAGACTTGGAGCTTTT TAGGAATATTGCAGACAAATTCGCTACCACCTTCAATGCAGACGGAACTCATAATTTGATTGTACGCCTGCGGCACAATG TCATCAGGACTGGTTTACGTAACATCAGCATCTCATACTCCCGCATCTCATTGGCAGATGTTGCTAGAAAATTGAGGTTG AACTCTGCAAGTCCCGTTGCTGATGCTGAGAGCATTGTATCAAAGGCTATCCGTGATGGGGCAATTGATGCTACATTGGA TCATGCAAATGGTTGGATGGTCTCTAAGGAAACTGGAGATATTTACTCCACCAATGAGCCTCAGTTGGCTTTCAATTCTA GGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTGCGAGCCCTGCGTTTTCCGCCGAACACACACAAAGAAAAGGAA AGTGCTGAGAAGAGGAGAGAGAGGCAACAGCAAGAGCAAGAACTAGCTAAGCATATTGCAGAGGAGGATGATGACGACTT CTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0431400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQKGMENALRPYFELTNAVRIGDLELFRNIADKFATTFNADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVARKLRL NSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKE SAEKRRERQQQEQELAKHIAEEDDDDF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10758
1 187 187 1.4E-114 –
ProSiteProfiles
PS50250
1 120 120 22.836
IPR000717
PANTHER
PTHR10758:SF8
1 187 187 1.4E-114 –
Gene3D
G3DSA:1.25.40.570
2 60 59 7.4E-9 –
Pfam
PF01399
11 116 106 2.2E-23
IPR000717
SMART
SM00753
45 138 94 4.0E-23 –
SMART
SM00088
45 138 94 4.0E-23
IPR000717
SUPERFAMILY
SSF46785
46 122 77 1.12E-9
IPR036390
Pfam
PF08375
120 186 67 7.4E-28
IPR013586
MobiDBLite
mobidb-lite
151 187 37 - –
MobiDBLite
mobidb-lite
151 180 30 - –
Coils
Coil
154 181 28 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000502
Cellular component Proteasome complex A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
Subterm of
GO:0030234
Molecular function Enzyme regulator activity Binds to and modulates the activity of an enzyme.
Subterm of
GO:0042176
Biological process Regulation of protein catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0431400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…