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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0431900 |
| Transcript ID | LotjaGi1g1v0431900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prolyl 4-hydroxylase alpha subunit, putative; TAIR: AT1G20270.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q9LN20|P4H3_ARATH Probable prolyl 4-hydroxylase 3; TrEMBL-Plants: tr|I1JSZ3|I1JSZ3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0431900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92679919..92683677) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAAAGGAAAGTTCACGCATACAAGATCACAGGGGAAGCGATGGTCGACGGTTACGCTCGTTGCGTCAATGCTTTT CATGCTCACACTGGTTATTCTCTTGCTCCTTGCACTCGGCATTGTTTATCTTCCAACTACCGACGACGATTCTCCGATCA CGGATCTCAGTTCCTTCCGGCGTAGAACCTCTCAAAGGTAACTGCTACGATTTCTCTTCTTCTTCTGTTTGATTTTGATT TGTAATTTGTATGTTCATTGAGTAGATTCTTCAGATGAATGTGTTTAATCTTTGATAATTGAGTTTGTTGCTTCTGGAAA TGGTGACAGTTTGGAAGAGAATCAGGAGCAGTGGACCGAAATTCTCTCCTGGGAGCCGAGAGCTTTCATTTTTCACAATT TCCTGGTTAGTTTTCGTCCTCTGCTTGTGGATCTGTTTCTCTTCCTTCTTTATCACTAGAGATTACGTTACGTGCCTGTG ACTGAGTATTCAAATTTTCAGTTGAGGCAACTCGGTGTTTTTCCTGGATCGTGATTTTTTTCACCTTTTGGAACAGTTGA GATTGAGATTATTTTGTTCCTTCAATGTTTTCTTCAAGTGTTAATAGAGTGCTGTGCCGCATCTAAATTACTGCATATAT GTGAAGCAAAATTGTAGAGCTGCAATTGATGAATGAAACTTCTATAAGAATAGGCTAGATTCACAGAAAACCAGATTAGA TGAACATCTAGGTTCTTCTAGTTTGTTTGATATGAAAGGAAATCCAGGTATTCATACATGGAAATGGAGTATTTAGATTG TGGTAAACTTGAACTTGCTGAAAGACTGAGAGTTTTAGCAAGAGATCTTAATTTACTTCTTTAGATTCTTGCAGTTGTTG TAAGCCTTTGAATTTTATATTGTATGAAAATGAGCTATAATTCTGGCTATCTTTTGGAACAGTCAAAAGTAGAATGTGAA TACATGATCAATCTTGCCAAACCTCACATGGCAAAATCAAGTGTTGTTGATAGCCAGACTGGAAAGAGTGTAGAAAGCAG GTTTGCCTTTGTCCCGTGTTTTTTTTAATATTCCAATCATTGTTGATCATATTTTTGTTGAGATACTGGTTGCACTGCAT TACTCAAGATGTCGGCTGTTTGTAGGGTTCGAACTAGTTCAGGAATGTTTTTGAAGAGAGGAAAGGACAAAGTTATCCAG ACTATAGAAAAAAGAATTGCTGACTTTGCCTTCATACCAGTAGGTATGACTTCTTATGTGATACCTATATCTGCCGGCTT ATCGCTTTCCTGTTATCCTATTTTGCTCATTAATTTTAGTTTACTAGCATAATGTTTGACTGCCTCAACAACGCTATGGA TATGCAGCTAATTGTTTGCATTTCACATTGAGTAGAAATAAAATTTGTTGTAGGAGTTCTTCTAAAGATTTGCATTTACC AGCATACTTCAGTATCTCACTTCTCTTGATATGAGTTTTCATGCCATATGGCTTCCGCTTGATGGCCCATGGAGCCAATG GCTACTTTCTCCGGAGTTTTATAGTAATGAAAAGAAAAATTTAAAGAATGAAACTGGTCTATTTTCTTCTTTTGAAAAAT TTATTTAACGCCTTGTAGGTTTGCGGTGGAAAAGTATGATAATCCACCAAAAGGCAATTGATTAGTCCATTGTAGATTAA GAGAAACACAAAAGTTTATCATGTTGACAATTTTGGACATTTCATACTTTGTCATAATAAAGTTAATGATGTATAAGTTT GCATATTTTTTAAACTTATTGTTTGCGTCTAAGTAAGTCCTTTTCCTAGATAACCTGACCAACAATGAGTGTTACCTTTG TCTTGATAGATAAGTCATTTGCCTAGAACCCCTTTAATCCTGTATTCTCATGTTCTGCACAAGGTGAATTTATGAAGTTA TTTACCACATTGGTTGTAAAAGAGATAAATGGATGGGTGACTGTGAAGTAGTTAACTTTCTCAACTAATCATTGTTATCT TCTTCGATTTGATACTCTCACTGATTTGAATAAGCTTAGCATTTGGATCCATAGGAGTCCACAAGCTTTAAGAGTGTTTC CTTTAGGATGTCCATGGCATGCTTGCTGTGGGAAATCATGATACCACCCCTGGATTGTCCACCTATAGTCCCAAGAACTA TCAAATTTCCAAGATCTTTTGTTTGAAAATGGTGACAAAGATGTTATTGTACCTGAGATATGCTATGCTGATAAGTGATA ACCCTGTGGTGGCTATGTCATTGGTATACATGATGGTGTAAATGCACCCTTGGATTGAATGGTAATAGATAAATGGTGTG GTTAGATTCCGTCTTTGTCATACTTTGCTCTTGAACTGTAGCGCTAAATCCATGGGTTGTCATGCACACTGGGGATCATG ATGAAGAAAAACAACAATGTGGAGTTGAGGTGCATGCCCCTCATTGTTCATGAAACTTCCATGGGTCATAGACTGTAATA GATGTTGATTGACAGTGGCAAATGGTGAATGGTGGAAGACATGGCCGGAAAATGTTGCTGGAAAAACATTGTGGAAGAGA ATGATTGGAAACCAGAGTGAAATACAATTTACCAGGAAAAAAGTTCACTTGGTTACGCATAAAATATGGTTTACTTTTTG TTAGGCTCTAGCTAGATTCCATGTGAGGGAAGAGTAAATGAGAGAATCTTTGATGAAACCTGTGTAACCATATGACAGAG AGGTAATATGTAGTTGGGAAGTAAAAAATACAAAGATCATATGTATGCTAATTTTTGTAATTACAAGATCATATGCATCA CTGCTAAAGTAGCTCTAAAACCTATGTAATTGTCAATTTTAATATTTTTCTGTTAGCACTTTGTACCTGTTGATGTGATT GAATACTTAATATTATTTCTCATTCACTATTGATCAACTTTAAAATATGCAGAGAATGGAGAAGGACTTCAGGTTCTTCA CTATGAAGTTGGGCAGAAATATGAACCTCACTATGATTACTTCCTTGATGAGTTCAACACTAAAAATGGAGGCCAACGTA TTGCTACAGTTCTTATGTACCTGTACGTTCTTATTCTCTTCTCAACTATTGGTTTTGCATTGTGCGTTGTGATGGATGGT GTATTGACGATTTTACTTGACGTTTCTTTCTGCTTCTTATGCAGTTCAGATGTTGAAGAAGGTGGTGAGACCATATTTCC TGCTGCCAAGGCAAACTTTAGTTCTGTGCCATGGTATAATGATTTATCTGTATGTGCTAAAAAGGGTCTATCAGTGAAAC CAAAAAGGGGTGATGCTCTGCTGTTTTGGAGCATAAGGCCAGATGCCACACTAGATCCATCAAGTTTACATGGTTAGAAT TTAGAAAGTATTCAAAATTGTCACTGGTTCAGACTGACTCAATTTTGACCACATTTATCCATTAGTCTTCTTTCTGCATA TAGGTTGCAGATTGGGCCATATATATACTGCTGCTGTTTAATCTTCTGCATGCATCCTCTACTTCCACCCTCTATAAATA TAGAGACCTTATGTTGACAGCATTATTGCCATGTCATTTAACTTATTTTTCTTTTTCAGTGGAAATTAAAAGCTGTACCG GACATACCATTTTTTACTCGCAGGTTAATTTTGTTTTCAGGAAAGCTATGATTGGTAAAGTTAATTAATTTATCTTTGCT TCTAGGTGGTTGCCCAGTAATTAGAGGAAATAAATGGTCTTCAACGAAGTGGATGCATCTTGAGGAGTACAAAGTTTGA
CDS sequence (LotjaGi1g1v0431900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAAGGAAAGTTCACGCATACAAGATCACAGGGGAAGCGATGGTCGACGGTTACGCTCGTTGCGTCAATGCTTTT CATGCTCACACTGGTTATTCTCTTGCTCCTTGCACTCGGCATTGTTTATCTTCCAACTACCGACGACGATTCTCCGATCA CGGATCTCAGTTCCTTCCGGCGTAGAACCTCTCAAAGTGGTGACAGTTTGGAAGAGAATCAGGAGCAGTGGACCGAAATT CTCTCCTGGGAGCCGAGAGCTTTCATTTTTCACAATTTCCTGTCAAAAGTAGAATGTGAATACATGATCAATCTTGCCAA ACCTCACATGGCAAAATCAAGTGTTGTTGATAGCCAGACTGGAAAGAGTGTAGAAAGCAGGGTTCGAACTAGTTCAGGAA TGTTTTTGAAGAGAGGAAAGGACAAAGTTATCCAGACTATAGAAAAAAGAATTGCTGACTTTGCCTTCATACCAGTTTTG AATGGAGAAGGACTTCAGGTTCTTCACTATGAAGTTGGGCAGAAATATGAACCTCACTATGATTACTTCCTTGATGAGTT CAACACTAAAAATGGAGGCCAACGTATTGCTACAGTTCTTATGTACCTTTCAGATGTTGAAGAAGGTGGTGAGACCATAT TTCCTGCTGCCAAGGCAAACTTTAGTTCTGTGCCATGGTATAATGATTTATCTGTATGTGCTAAAAAGGGTCTATCAGTG AAACCAAAAAGGGGTGATGCTCTGCTGTTTTGGAGCATAAGGCCAGATGCCACACTAGATCCATCAAGTTTACATGGTGG TTGCCCAGTAATTAGAGGAAATAAATGGTCTTCAACGAAGTGGATGCATCTTGAGGAGTACAAAGTTTGA
Protein sequence (LotjaGi1g1v0431900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGKFTHTRSQGKRWSTVTLVASMLFMLTLVILLLLALGIVYLPTTDDDSPITDLSSFRRRTSQSGDSLEENQEQWTEI LSWEPRAFIFHNFLSKVECEYMINLAKPHMAKSSVVDSQTGKSVESRVRTSSGMFLKRGKDKVIQTIEKRIADFAFIPVL NGEGLQVLHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVEEGGETIFPAAKANFSSVPWYNDLSVCAKKGLSV KPKRGDALLFWSIRPDATLDPSSLHGGCPVIRGNKWSSTKWMHLEEYKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 10 | 288 | 279 | 3.5E-143 | – | |
| PANTHER | 10 | 288 | 279 | 3.5E-143 | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 21 | 44 | 24 | - | – | |
| Phobius | 45 | 289 | 245 | - | – | |
| Gene3D | 78 | 284 | 207 | 3.0E-76 | – | |
| SMART | 85 | 283 | 199 | 4.3E-67 | ||
| ProSiteProfiles | 161 | 284 | 124 | 12.495 | ||
| Pfam | 165 | 283 | 119 | 3.8E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor. | ||
| Molecular function | L-ascorbic acid binding | Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0431900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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