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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0432500 |
| Transcript ID | LotjaGi1g1v0432500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase D; TAIR: AT4G35790.1 phospholipase D delta; Swiss-Prot: sp|Q9C5Y0|PLDD1_ARATH Phospholipase D delta; TrEMBL-Plants: tr|A0A151TCK8|A0A151TCK8_CAJCA Phospholipase D; Found in the gene: LotjaGi1g1v0432500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92741080..92746735) extracted from Lotus japonicus Gifu genome v1.2.
ACAATGCCGAATAAATCTGAATACGCTGTCTTCCTTCACGGCAATCTCGACGTGAAGGTCATGGAAGCTCGGTTTCTTCC CAACATGGACATGCTCTCGGAGCGTGTTCGGAGAATCTTCTCCGCTCTCAACTCCTGCAGCGCTTCCATGGCGGGAAAGG GAAACCACAGCCATCCACGTCACCGCCACCATAAGATCATCACCAGCGACCCTTACGTCACCGTCTGCCTCGCCGGCGCC ACGGTGGCGCGAACCCGCGTCATCCCGAATTCCCAGAGCCCAACGTGGAACGAGCATTTCAATATTCCTCTGGCTCACCC TGTCACGCAGATTGAGTTCTATGTTAAGGATAATGACATGTTCGGCGCGGATTTGATCGGAATCGCAACCGTCTCCGCCG CGAGGATCTTGTCCGGGGAAGTAATCAGCGATTGGTTTCCGATTATAGGAACGTTCGGGAAGCCTCCGAAACCCGATTGC GCGGTTAGGCTGGAGTTGAAATTCACCAGATGTGAAGATAGTCCTCTGTTCCGGTCCGGCGTTGACCCGGATCCGGACCG GTTTGTTGTGCGGGATTCGTATTTTCCGGTTCGGCGTGGAGGGTCGGTGACGCTGTATCAGGACGCGCACGTGCCGGAGG CGATGTTGCCGGAGATTGAGTTGGAAGATGGGGTGGAGTTTCAGCAAGGGAAGTGCTGGGAAGATATCTGTCATGCCATT TTGGAAGCTCATCATTTGGTGTATATTGTGGGTTGGTCTATCTTTCATAAGGTGAAGCTTGTTAGAGAACCTAGCAAGCC TTTACCTAGTGGTGGGAATTTGAACCTGGGGGAGTTGCTCAAGTATAAGTCACAAGAAGGTTTGAGAGTTTTGCTTTTGG TTTGGGATGATAAGACTTCTCACAGCAAATTTTTCATTAACACGGTACTTTTGTCGGTTTCCATGAATTAGTTTCTTCTT TAATTTGTTCTTGTCAATTGTCATGATGATATACACATTTTCCTTGGCTTGATGAGATGATACCAAACATTTATTAACAT TGAATATCAATCTAGTTCTAGATACCTGGTGACAGATTCCAATTCAAGTTATAATGTTAGCTTTCTGATTTTTAAAATTA CAATTTGTTGGCACATGGCTTCATATTTCTGATATAGACTTCTAATAATTCTGCATTGAGTTTTTGCTGCCTTCATTTTA ATGCTATTGAGTTTTGTACATGCAAGTTGCTTGGGCAGAGATAATGGTTTGGGTTGGGCATGCATATTACTTTGTCTGGC ATTCTGCCCTGTTTTATATGGTGTTTTAAATAGTTTTTTACAACCTTACAAGTTAATAATTTGGTTGCAGCCGGGATTGA TGCAAACTCACGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTACATGTGTGCTGTCACCTCGATATGCCAGC AGTAAGCTTAGCATTTTCAAGCAGCAGGCATGCTTTATGCTATGGTTTAGTAACTTTCCCAGATTTGTCATTTTTCCATA CTTTCATAATATCACTCTATTTTAATATATGGATGGAATGGGTACTCTCATATGAGATTTTCACATGCATAGGATACTTT TTTCATATGAGAAGATCATGCTAAAATCTAATATGATAGGAGCTATTCTTCTGAACAGGATAAACTTCCTTGAATCTTTC CATTGATGTTGTTAAAATATCTGAAAAATATCTCATAATATATGGGTAGTATCTTAAAATAATTTAGAGTATCCTAGATT ATGCTAAGGATCAATTGTCAGATTTCATAATTTGTTTTGTTAATTACTAAGAATTAGAGCTGAGTGGTTAGTATTTGGTA TGACAATTTCAGAACATGTCATATCAAATTAAACAAGAGAATATTTTCATCTTCCTATGTACCTAAACTAAATCCCTATA GTTTCAAAAGATGCTTTACTGAACTGTGGCATCTAAATTTGTATGGTCCAAACTACATTCTTGAAGTGAGTATACTATTT CTCCAACTGTTGAAAAAAAATTGGTAATTGATTATTATGAATCTCAGCAGGGATTTTCTAATAGAAGATTATTGTGCTTT TAATAAATTGGAAAACCTATTGACTATACTATTTGGAACCATTCTTCAGGTTGTTGGAACGCTTTTTACGCATCATCAGA AATGTGTGATTGTTGATACTCAGGCAAATGGCAACAATCGGAAGATTACTGCATTTATAGGTGGTCTAGATCTTTGTGAT GGCCGGTATGATACGCCTGAGCATAGAATTTTCCGAGATCTTGACACTGTTTTTCAGGATGATTATCATAATCCCACATT TTCTGTAAGTTCATAACATTCCAAACTTGCAATCATTATGACCTTTTCTTTACATCATGACATGTTTCTGTTTCCTTCTC CAAGAAGCAAAAGTAGAGGTCTTTTTCTTAGATGAGGTTAATTATTAACCACATGTTCCTCTTTAGCTTATGATAGTGAT TTCTTGGTTTAAGTCTTAATATCCAAACAGGCATTGTTTTAGCGTATGTATAAGTTGACATGTTAAAGTAAAAACAGAAC TTCCATGCCACCCTTCCACTTAATCAGCAAGTTTGACATGTTGTGTTTGAAATCCAGCAGTGTTATTGATACTTCACATC TAGTAACTTCATGAACATAAATTGCTGTCCAAGTTTTGTTTGATACTGAGATTGAGATCGTCAGTGCACTCTTACCAAGT GAAATTCTTTCATGTTCATTTTAATTATAGGCAGGAACCAAGGGTCCAAGACAACCATGGCATGATTTACATTGCAGAAT TGAAGGCCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCACAAAATGGCATGAGTTGAGTC AAAAATTCAAGAGAGTATCTCACTGGCATGATGATTCTTTGATTAAGTTAGATCGCATCTCTTGGATTCTTAGTCCCTCT GAATCAATTGCAAAGGATGGTCCTGAATTATGGGTTTCAGAGGAGGATGACCCCGAAAATTGGCATGTTCAGGTTCACTA TCTTCAAAGTATAGCTTCTGTTTGCTTGTTTTTTTATCAGCAGAGAACTTGTTTACTTATAATTTTGTACATGTTCTTTG ACAGGTTTTCCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCTAAGGATGTACTTGAAGCTGAGGCTCAGGTAAACT TTAATCCAATATGGAGTTATCCTATAGTTAATGTTTATAGAATCTTTCAGTTTTGGATTTGTGTTCCCTGCCATCAGAGC AATCATGAATTCACACATTAAAATTTAAAATAACTTTAGCCGTTCGAATTAGACGACTTATATATTCCAAGATGTAACAG CTTAATAAACTCAATATATGAGTTGTCCGATCTTTTGATTAAACAACTCAAATTCATTACCTATGTGAATTTAGGATTTC CACGATTGCGGGGAATCTAAATCCTTAGGTTTTCTTGTCTTACTAATTTCCATTTTATTGTCATTCATTGCAGAATCTTG TTTGTGCGAAAAATTTGGTCGTAGACAAGAGTATTCAAACAGCGTACATACATGCCATCAGATCTGCTCAGCATTTTATT TATATTGAGAATCAATATTTCATTGGTTCATCCTTTGCTTGGCCATCTTACAAAGATACAGGTTTTGGCAGAACATTGAT GTTTCCTCATGTAACTTGTTGCATGATTGCTCATAAATTCTCTATAAGTCCCTATGACTAGTTTTAGCATTTTACAGACG TTTTTTTCACTTCTACCTCAGAATATTACTACAGAATATTGCAGTGCTTGCAATACCATGCTCTTTTGCTTACATAGTGT AAATCGATCAACTGCTTAGTACAAATGATAAATGACAAATCTGGCTCGAAATATATGTTGTGTTATGATTGTGTAGCCTC AATATCTATATCATTTGAAATATTGATTCTCTTTCATTACTTTTCCTGCGCATAGGGGGATAAACAAGACTTGGTTGTGT TAAGCATTCACTGATATTTTTATCAATTTTTCATGTTAACATTTTCTAGTTGTCTAATTTTCAATTATATTATCAGGTGC TGATAACTTAATTCCTATTGAGCTGGCACTGAAGATAGTTAGCAAGATAAGATCCAAGGAGAGATTTACAGTTTACATTG TCATCCCAATGTGGCCTGAAGGTGCCCCTTCTTCCGCCGCTGTGCAAGAGATTCTCTTTTGGCAGGTATTATAGCACAAA AATACGTAGCTAGCATAGCATATAAATTTTCAAATAGTTAGATAATTTGTTCGTCAACCAATTGCAGTTTTGGTGCTTAC TATTCATATTTTCAGGGACAAACTATGCAAATGATGTACGAAATCATAGCTCGGGAGTTAAAATCTATGCACCTTTACAA CAGCCATCCGCAAGATTACCTCAATTTTTACTGTCTTGGAAACAGAGAGAAATTGATAACTGAAGTTTCAAGCTCATATA GTTCCCCTTCAGAAAACGTCGACACGGTAATCATTCATAGCATGTTTTGAACAATCCTTCTTTTCTCAGAAATCAATTAT GGCACCCAAAGCTACTCACAGAAGCTCTCCATATAATTTGATTTGAACTTTCAAAATAGTAGAAGGATTTTCAAACATTC ACTCAATATTTTCCTTCCTTTGGTGCATTATTAATGGAATGGATCAATGAACTTGCAATTGAAAATATGTTAGAACAGTA AAGCTCACATGTTATGTAAGTGGCCCCTGCTATTGCTACATTCCCCAAGACTACTTGAGTGTGAAACTGTGAATGTGAAG TAATGGTCGATCTACTTGTTGGTAGATATGTAACTCAGGGTTGATATTATTATTTTGTGCTGATGGCATGAGGTTAACAT TTTCTTCAATGATCATCAGGTTTCAGCTTCACAAAAGTTCCAAAGGTTTATGATTTATGTACATGCCAAGGGAATGGTTG TGGATGATGAATATGTGATAGTTGGGTCTGCCAATATCAACCAAAGATCTTTGGCTGGTTCAAGAGATACTGAGATAGCA ATGGGTGCATATCAACCCCACCATACGTGGAGTAAGAAAAAGGGACATCCACATGGTCAGGTTAGTAAAATAACTCACTA ACTATATACTGTGAACCTAACTGCATAGTTTTTGTTTCACTTTTCTAAGCCTTTTAGAGGCCTGAGGGAAATTCCTCAGT TTACTTTCACTAGACATATTTGCAGAATATTTGGATTGGAGTTGACACATAATCCAAAGGACAGCAACTCCAGACGCTAC ACTTTGTAGCTTCTATTTAGAAGTGATTATGGGATTTCCCATTGCAGAACCAAACACGCTATTAATTGAGAGTTATATAC AGGTATATGGGTATAGAATGTCCTTGTGGGCAGAACACATGGGGTTGATACATCCTTGCTTCAAAGAGCCTGAAAGTTTG GACTGCGTAAAGAGTGTGAACAAGATTGCTGAAGACAACTGGAAGAGGTACACAGCTGATGAATTTTACCCACTGCAAGG GCACCTTTTGAAGTACCCTGTGAATGTAGATGCCAATGGGAAGGTAAGCTCCATACCTAGATTTGAGTCTTTCCCAGATG TTGGTGGCAAGGTCCTTGGCTCCAGGTCTACCCTTCCTGATGCTCTAACAACATAA
CDS sequence (LotjaGi1g1v0432500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAATAAATCTGAATACGCTGTCTTCCTTCACGGCAATCTCGACGTGAAGGTCATGGAAGCTCGGTTTCTTCCCAA CATGGACATGCTCTCGGAGCGTGTTCGGAGAATCTTCTCCGCTCTCAACTCCTGCAGCGCTTCCATGGCGGGAAAGGGAA ACCACAGCCATCCACGTCACCGCCACCATAAGATCATCACCAGCGACCCTTACGTCACCGTCTGCCTCGCCGGCGCCACG GTGGCGCGAACCCGCGTCATCCCGAATTCCCAGAGCCCAACGTGGAACGAGCATTTCAATATTCCTCTGGCTCACCCTGT CACGCAGATTGAGTTCTATGTTAAGGATAATGACATGTTCGGCGCGGATTTGATCGGAATCGCAACCGTCTCCGCCGCGA GGATCTTGTCCGGGGAAGTAATCAGCGATTGGTTTCCGATTATAGGAACGTTCGGGAAGCCTCCGAAACCCGATTGCGCG GTTAGGCTGGAGTTGAAATTCACCAGATGTGAAGATAGTCCTCTGTTCCGGTCCGGCGTTGACCCGGATCCGGACCGGTT TGTTGTGCGGGATTCGTATTTTCCGGTTCGGCGTGGAGGGTCGGTGACGCTGTATCAGGACGCGCACGTGCCGGAGGCGA TGTTGCCGGAGATTGAGTTGGAAGATGGGGTGGAGTTTCAGCAAGGGAAGTGCTGGGAAGATATCTGTCATGCCATTTTG GAAGCTCATCATTTGGTGTATATTGTGGGTTGGTCTATCTTTCATAAGGTGAAGCTTGTTAGAGAACCTAGCAAGCCTTT ACCTAGTGGTGGGAATTTGAACCTGGGGGAGTTGCTCAAGTATAAGTCACAAGAAGGTTTGAGAGTTTTGCTTTTGGTTT GGGATGATAAGACTTCTCACAGCAAATTTTTCATTAACACGCCGGGATTGATGCAAACTCACGATGAAGAAACTCGAAAG TTTTTCAAGCATTCTTCAGTTACATGTGTGCTGTCACCTCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGC ATGCTTTATGCTATGGTTTAGTAACTTTCCCAGATTTGTCGTTGTTGGAACGCTTTTTACGCATCATCAGAAATGTGTGA TTGTTGATACTCAGGCAAATGGCAACAATCGGAAGATTACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTAT GATACGCCTGAGCATAGAATTTTCCGAGATCTTGACACTGTTTTTCAGGATGATTATCATAATCCCACATTTTCTGCAGG AACCAAGGGTCCAAGACAACCATGGCATGATTTACATTGCAGAATTGAAGGCCCTGCTGCATATGATATACTCACTAATT TTGAGCAGCGCTGGAGAAAAGCCACAAAATGGCATGAGTTGAGTCAAAAATTCAAGAGAGTATCTCACTGGCATGATGAT TCTTTGATTAAGTTAGATCGCATCTCTTGGATTCTTAGTCCCTCTGAATCAATTGCAAAGGATGGTCCTGAATTATGGGT TTCAGAGGAGGATGACCCCGAAAATTGGCATGTTCAGGTTTTCCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCTA AGGATGTACTTGAAGCTGAGGCTCAGAATCTTGTTTGTGCGAAAAATTTGGTCGTAGACAAGAGTATTCAAACAGCGTAC ATACATGCCATCAGATCTGCTCAGCATTTTATTTATATTGAGAATCAATATTTCATTGGTTCATCCTTTGCTTGGCCATC TTACAAAGATACAGGTGCTGATAACTTAATTCCTATTGAGCTGGCACTGAAGATAGTTAGCAAGATAAGATCCAAGGAGA GATTTACAGTTTACATTGTCATCCCAATGTGGCCTGAAGGTGCCCCTTCTTCCGCCGCTGTGCAAGAGATTCTCTTTTGG CAGGGACAAACTATGCAAATGATGTACGAAATCATAGCTCGGGAGTTAAAATCTATGCACCTTTACAACAGCCATCCGCA AGATTACCTCAATTTTTACTGTCTTGGAAACAGAGAGAAATTGATAACTGAAGTTTCAAGCTCATATAGTTCCCCTTCAG AAAACGTCGACACGGTTTCAGCTTCACAAAAGTTCCAAAGGTTTATGATTTATGTACATGCCAAGGGAATGGTTGTGGAT GATGAATATGTGATAGTTGGGTCTGCCAATATCAACCAAAGATCTTTGGCTGGTTCAAGAGATACTGAGATAGCAATGGG TGCATATCAACCCCACCATACGTGGAGTAAGAAAAAGGGACATCCACATGGTCAGGTATATGGGTATAGAATGTCCTTGT GGGCAGAACACATGGGGTTGATACATCCTTGCTTCAAAGAGCCTGAAAGTTTGGACTGCGTAAAGAGTGTGAACAAGATT GCTGAAGACAACTGGAAGAGGTACACAGCTGATGAATTTTACCCACTGCAAGGGCACCTTTTGAAGTACCCTGTGAATGT AGATGCCAATGGGAAGGTAAGCTCCATACCTAGATTTGAGTCTTTCCCAGATGTTGGTGGCAAGGTCCTTGGCTCCAGGT CTACCCTTCCTGATGCTCTAACAACATAA
Protein sequence (LotjaGi1g1v0432500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNKSEYAVFLHGNLDVKVMEARFLPNMDMLSERVRRIFSALNSCSASMAGKGNHSHPRHRHHKIITSDPYVTVCLAGAT VARTRVIPNSQSPTWNEHFNIPLAHPVTQIEFYVKDNDMFGADLIGIATVSAARILSGEVISDWFPIIGTFGKPPKPDCA VRLELKFTRCEDSPLFRSGVDPDPDRFVVRDSYFPVRRGGSVTLYQDAHVPEAMLPEIELEDGVEFQQGKCWEDICHAIL EAHHLVYIVGWSIFHKVKLVREPSKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTPGLMQTHDEETRK FFKHSSVTCVLSPRYASSKLSIFKQQACFMLWFSNFPRFVVVGTLFTHHQKCVIVDTQANGNNRKITAFIGGLDLCDGRY DTPEHRIFRDLDTVFQDDYHNPTFSAGTKGPRQPWHDLHCRIEGPAAYDILTNFEQRWRKATKWHELSQKFKRVSHWHDD SLIKLDRISWILSPSESIAKDGPELWVSEEDDPENWHVQVFRSIDSGSLKGFPKDVLEAEAQNLVCAKNLVVDKSIQTAY IHAIRSAQHFIYIENQYFIGSSFAWPSYKDTGADNLIPIELALKIVSKIRSKERFTVYIVIPMWPEGAPSSAAVQEILFW QGQTMQMMYEIIARELKSMHLYNSHPQDYLNFYCLGNREKLITEVSSSYSSPSENVDTVSASQKFQRFMIYVHAKGMVVD DEYVIVGSANINQRSLAGSRDTEIAMGAYQPHHTWSKKKGHPHGQVYGYRMSLWAEHMGLIHPCFKEPESLDCVKSVNKI AEDNWKRYTADEFYPLQGHLLKYPVNVDANGKVSSIPRFESFPDVGGKVLGSRSTLPDALTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 862 | 862 | 0.0 | ||
| ProSiteProfiles | 1 | 129 | 129 | 12.395 | ||
| PANTHER | 4 | 862 | 859 | 0.0 | – | |
| PANTHER | 4 | 862 | 859 | 0.0 | ||
| CDD | 8 | 168 | 161 | 6.84613E-74 | – | |
| Gene3D | 11 | 174 | 164 | 1.1E-22 | ||
| SUPERFAMILY | 11 | 168 | 158 | 1.56E-24 | – | |
| Pfam | 13 | 147 | 135 | 2.6E-25 | ||
| SMART | 14 | 144 | 131 | 2.4E-17 | ||
| SUPERFAMILY | 190 | 472 | 283 | 1.63E-29 | – | |
| Gene3D | 221 | 482 | 262 | 1.4E-20 | – | |
| ProSiteProfiles | 364 | 399 | 36 | 10.52 | ||
| SMART | 364 | 399 | 36 | 0.08 | ||
| Pfam | 365 | 399 | 35 | 6.9E-7 | ||
| Gene3D | 524 | 759 | 236 | 2.8E-24 | – | |
| SUPERFAMILY | 553 | 794 | 242 | 3.4E-29 | – | |
| SMART | 708 | 735 | 28 | 1.7E-8 | ||
| ProSiteProfiles | 708 | 735 | 28 | 14.534 | ||
| Pfam | 709 | 735 | 27 | 8.7E-8 | ||
| Pfam | 784 | 852 | 69 | 1.1E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Phospholipase D activity | Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Phosphatidylcholine metabolic process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. |
Expression pattern of LotjaGi1g1v0432500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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