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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0440200 |
| Transcript ID | LotjaGi1g1v0440200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | High mobility group protein; TAIR: AT3G51880.2 high mobility group B1; Swiss-Prot: sp|O49595|HMGB1_ARATH High mobility group B protein 1; TrEMBL-Plants: tr|I3T9K0|I3T9K0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0440200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93613811..93619258) extracted from Lotus japonicus Gifu genome v1.2.
TTACAATATCTTCTCCAATCAAAACCTGCTATCGCAGGTAAAAACCATTCCCTTGTGCACAGTTGACTCATGTTACAGCA AAGTCTCTCTCCACACCTTACCGGCTGTTCCGGTCACACTTGGTCTTGTTTTGTTCTCGCTTGGATTCTCCAGAGCTTTG TTTGTGTTTTGTTCTGCTTTGTGTGTTGAAGGTCTTCTCCTCTTTCCTTCATCTTTCAGAAGGTAAAACCTTTTGCTCTT GTTTTTTCTCTGCTTCAATATCTGTTTGGTTCCTCAGAAAATCTCAAATTATCAACTCTGTTGCTTTTTTTCTTTCTGTT TTATGTGTGTTTGGATTATGTTTTTTAGGACCTCAAAATGAAATATTGATTTTTTTTTAAAGGTAAATGAAATATCGATG AGTTAGGAATATAGAAAAAGAAGTTAAACTTGGTTGTAATTGGTAGCTTCTGTTACCAGGATTCTCTTTGTGTGTATGTG TGTTTGAGATATATGTAATTGGTCAAATATCTGAATTGAGGATTATGTGATGTTTGTTCATGTAGTTGTTGAGAATTATA CCTCTTTTTTTGTATGATTTTACCTCAATATTCTGATATATGAGTTTTGAAAGGGAAGTCATCTGAAAGTGTGTGATTTG TTTGTATGAATTTATGTTGTGGCTACTGGCTACACAAACACTAAATCATGAGAAATTGATATTGGTGGTGGATATGTGAC ACTTTGGGGGGAACAGTTAACCCTAATGGGTGCATTTATCCCAAATTTGTTGAGGATCTTGTATCATGTATTGGGCTAAT CTTGCAATGTTATTGATCTGCTCTCTCTTTTATTACTGAAATTGCTAATTCTTATTTTTTTGATCTTTTTTCGTAAAATA GACTGTCTTGGTAAGGGAACTGAGAACATGACAAAGGGAAAGAAAGCTGGAAAGACTTCAAAGGAAGTATTGAAACCAGT TGATGACCGGTTAGTTCCTATATCTTCACACATAGTATGAACTAATGTGGATCAGTTTGATTTTTCATAGAACTTCACAT GACATTGTCCGGTGTTGGTTTTCTGGCGATTTACATCCTTAAATATAGAAGTTCTGTTGGTATCTGATTGGCGGAAACAG CTGTTACAGGAATAGTGTAGTGATGGAACGTATATCTCTATTGTTTACAGAAAGGTAGGAAAGCGAAAGGCGGCTGTTAA ACCCGATAAGGGTACTGCAGGGAAGGCAAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCGCCCAGCGCTTTCT TTGTGTTCCTGTTTGTATCTCTGTCTTTCTCCCTTTCTGCTATAGCTCCTTTAGAAAATTTATCTGACTTATTTCCTACT CTGTCATAGTGAGGATTTCAGAAAGACTTTTAAGGCTGAAAATCCTAATGTAAAGGGTGTATCCGCTGTAAGTAACATAT TAATTGTTCCACTTTGTTTGCCGATGTATCCTTTTTGAATATGCATCTAAGTTCTTTTTGTTGTATATTGATTGAAGGTT GGGAAAGCTGGAGGAGAAAAATGGAAATCCTTGACTAAGGCTGTAAGCACTTCAATCTTGGATGCGTGTGTCAAAACTTG ATCTTTTTAAATATTTTACTCTTTGTTATGTCTTTAGCTGCTTTTACTGAAATCTACTGTATCAATATATCTATACTGAA CTCATTGGATTGAATACATGACCGAGGCTTGTAAGCACTGCAATCTTGAATACATGTGGCAAAACTCGAGTTACTCTTCA TAACTTCTTTAGATGCTTTTCAAGAAAAATATAAGCAACAATTTTATAAGTAAAAGCGGTTTATATACTGTAAGAAAATG CTACTTCTACTAAATTCCATTGTATCAGTATATCTGCATTGACCCCTTTGCATTGAAGAAGGGCGTTATTCTGTTACTTA TTTTATCTCTTCTATTTCAAATGGAAAGGAGAAAGCTCCATATGAAGCTAAGGCTGCAAAAAGGAAAGCTGAGTATGAAA AACTTATTAATGCTTATAATAATAAACAGGTAAGCATCCTGTACTGGTTGTTCTGTTGTCTTGTGCATTGGTTTTCTTGT TTATATGCTTCACATGATATATATTTCCAGGCAAGTACAGCGGATGATGTAGACGAGGAATCGGACAAGTCCAAATCTGA AATAAATGATGAAGAGGACGAAGCCAGTGGACAGGTAGTCTCGCTCTTCACTTTTTCTTATACCTTCATTTTGTTATTTA CTGAGTATTAACTTTGATCATCATAAGAAAAGGCTTGGTATATTGTTGACAATTGCTACATATGGAGTTGGTTTGGTTTC ACATCTAACTCAACCATATGTATGAACTCAAATCGAAAGTGAGAAGGAAAGCTCTCAAAATGGACTAAATGATATTTGAT GATTTCTGTTTATTCTGATGGGTTGTGAATTAGATCTTTTGATTCACCTTTATTTATGATTATATAATAGTAAAATGAAA TTTTGAGAAAGGATAATATGGGGAAACCCCATATCTGCATTGACCCCTCTGTATTGCAGAAGGACTTTGAATTGTTTGAT ACATGCATGAATCAATGCCATTCTAATCACTTATACAAATCGCATGATCCAATGAGTTCTTATTTCTTTTATTTCTTTTC TTCCCTGCTTTTCTTTCACCACTTCTCATCAAATAAATTGAAAAATCAACAAAAATTTCTAGCAAAGTATTTGTCCACTG GGTGGAGTAAGGTACATAGATCAAATGGTGTTAAATAAGCTCATATTGTCAAATGTCGAGAAACTAAGTAAGTACTATAG AATGCACCTTCTTTAGTTATTTCATTTCTTCATTTTCATTCTTCTAAAACAGGAGGTTCACAAAGCCACTCAATCACTTG CTCACATAGGAGCATCACACGATTACTTGGTCACTCAACACATACCTAATTTGACTACCTTAACTCCGTTTTCATTTTGA ATTGTGACATATAGCTTAGATTTTGTTTTTTTGAGACTTATGGTTAAGTTGTTTTGTCAATGCATGACTTAAAATTACTA CATCAAGAACTATTCATCCTTTATATGATATATTTTAACTATTTTTCACTGTGCTTTTGAATCTTACATATATGAGTTAT GATCCGCTATTCAAAATTTAACATGGCCATTCACCATTTGAATCTCAACTTGATGTCTGGTTTCCTTACCATTTTCTGCC ATTGAACAGGAGGGCCACCCGGATGAAGAGGATGATGACGAGGACGATGAAGATGATGATGATGATGAGGATGATGACTG AGATTTGTGTGCAGAACTTAATATGATGTTTCACTGGTGGGGGAAGCTATTATATATTTTGTCTGTGCATGGTAGGCTAC TTTGGATATTTGTGCTGGTAGAAAATGTGTCTTCTGTTACTGGCATGATATTTTGCTAGCTACTTGAGCTTCCCTCAGTG GTTAGTTATTGTGCTTAGACTCTCTTTCGGTACTGTGCCTTAAAATGTGTTGGCTGAAGTGATATAATTTCCTTTTTGAT AAATGCATTGGCATAATTGTATATGGTGAAGTGGCATACTCTTCATGTACATATGGAACATCGTATGCATGAACTTAACC ATTTTAATCTCTCTAGCTGTCCATTGAAGTGCTTGAAGCAAATGCGATTCAAAAGAGAAGTTGGAATAACCTCTCATTTT CTTGTTATGATATATTTATACTGATGTTGCTTTGGGTCATGGTTATCTATTTATTTTTCTGTTTATTCAAATTGTTTAGA TAATATGCATCATGAGTTGGTTGCTGCAGGATTAAATGAAAGACGTATTACAACACATATAGTCCTACACCATCCCCTTG TACACTCTTAACCATGTTTGTGCAATTGCCTGGAATAAAATAGTAGAGTGATCCAAAGTATTGACCTAGAAATTTAATAA GTATTTTCTTTAGATAAAAATTAATAAGTATTTTCTTTAGATAAAAATTATGATGGAATAATTTGAACTGCATCGGTTTA ATTTAAGGGTAGGTTCTGATGTCTAGCTGTTGTGTAGTCTACCATACGTGGAGATTACAAGGAGTTTGTCGGGGATAAGA GGTCTTTTGATACTTCTTTCTTGAGTCTTTGTTAGTGCGTATATTTATGGATCTTTATGTTTTCGAAGGATAACCTTAAT TTATGGTTGATTCACTACTGTGATCCTGAAAATCGGGGGTGTTACATTGAGTCTTTTCATTTTAGACTATCACCTTCGTG GAAAGTCTTTGCATGTTAGGCTTCATTTTCTAACTTCTTCTCTTGGTCAGCTCCAAACTTCTTTGATCAACTTGAGTAGC TTGGCCCAAATTCCAAAGTGACCTTCTTGGCGTTGGCGTAACTTCATTTTAGCATGAGTTGATCAAAGTCTTCTTCCCGT AAGTCTTTCTTTTGAGAGATTCCTGCAATCAATTCTTTAAAGCGATACTAACTACAAAAACTGAAATGTGTTATCATCAA AGCTTGACATAGGGATACTAGGTTCCGACACTTTGAAGACTTTGCTCTAGATGTGCATCTTATAAACCAACCTTATTGAT ATTTCAATGAGGACAAAGAATTAAACACTCCACATATCTACAAGTAGAAGCAAAATCAAAGGCTCGGGGAGCTTTAAAAA AATTGTGAGTTGATTAAGTTAAATTGATAAATAGAGGTTTATCAAATAATACATTATATCAATTCACATAATCAAGAGAA TCAATTATACACACCAAATGAAATAAAGATAAGAGATTGGTCTCAGTGAGTTCGGCCTTTTGAGAAGGGTTACTATATTT AGCTATATTGCATGAAAACTCCTTAAATCAAAACCAAAAAACAAGGAAACCTTTGGGAATTGAGACTTTTGGAACCTTAA TTTAATTTCAATGAAATGAGTGTATAGTATTGGACTATGCTGACAATGAAGCATGTATTTACAAATCTAAATTTTGAATG ACCTTCTACACTAGGTGGCAATCACCAATTGTGACGATCTGACATGAATATAAGGTCTTGCTACGAGAGGCAATTTTTCT GTGTACATAAATAGCCTTTTCAAATTCTCCTTGTTGATTGAAGCCAAGTCATCTATCTCACTGCTCCTCATGTATATCCA AAGGTCACCAGAGTTTACTCTTTTAAGACTGTCCCGGCAGAAAGGGCAAGATTGAGATCTTGCATGCCTAAACCAACAAA ATAAATAAGAATCCTTAAAAGTGAAGAAGCTAACTTTTATTGGATATCTAAATGCTATAGCAGTAATATAACTCGCTTCT CTTTTCTCAGAATCAAATATGATACACAGAAGCTACTTACACAAACTTCTCAGAATTGATTTTGGCTTTAGAATCATATA TAGAAAGTATTGGAAAATAATAGGTAAATGCTGTTCTGTTTTATTCCTCAGCCAAAGGCTGGTATTTATAGAGAGGATAC AATTATTA
CDS sequence (LotjaGi1g1v0440200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAAAGGGAAAGAAAGCTGGAAAGACTTCAAAGGAAGTATTGAAACCAGTTGATGACCGAAAGGTAGGAAAGCGAAA GGCGGCTGTTAAACCCGATAAGGGTACTGCAGGGAAGGCAAAGAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCGC CCAGCGCTTTCTTTGTGTTCCTTGAGGATTTCAGAAAGACTTTTAAGGCTGAAAATCCTAATGTAAAGGGTGTATCCGCT GTTGGGAAAGCTGGAGGAGAAAAATGGAAATCCTTGACTAAGGCTGAGAAAGCTCCATATGAAGCTAAGGCTGCAAAAAG GAAAGCTGAGTATGAAAAACTTATTAATGCTTATAATAATAAACAGGCAAGTACAGCGGATGATGTAGACGAGGAATCGG ACAAGTCCAAATCTGAAATAAATGATGAAGAGGACGAAGCCAGTGGACAGGAGGGCCACCCGGATGAAGAGGATGATGAC GAGGACGATGAAGATGATGATGATGATGAGGATGATGACTGA
Protein sequence (LotjaGi1g1v0440200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKGKKAGKTSKEVLKPVDDRKVGKRKAAVKPDKGTAGKAKKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKGVSA VGKAGGEKWKSLTKAEKAPYEAKAAKRKAEYEKLINAYNNKQASTADDVDEESDKSKSEINDEEDEASGQEGHPDEEDDD EDDEDDDDDEDDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 55 | 55 | - | – | |
| MobiDBLite | 1 | 43 | 43 | - | – | |
| PANTHER | 3 | 164 | 162 | 2.1E-65 | – | |
| PANTHER | 3 | 164 | 162 | 2.1E-65 | – | |
| SUPERFAMILY | 36 | 119 | 84 | 3.53E-25 | ||
| Gene3D | 36 | 122 | 87 | 1.1E-27 | ||
| SMART | 49 | 120 | 72 | 1.0E-26 | ||
| ProSiteProfiles | 50 | 119 | 70 | 19.173 | ||
| Pfam | 50 | 119 | 70 | 2.1E-24 | ||
| CDD | 52 | 113 | 62 | 2.18053E-15 | – | |
| Coils | 101 | 121 | 21 | - | – | |
| MobiDBLite | 118 | 173 | 56 | - | – | |
| MobiDBLite | 125 | 143 | 19 | - | – | |
| Coils | 126 | 146 | 21 | - | – | |
| MobiDBLite | 144 | 173 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0440200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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