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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0440300 |
| Transcript ID | LotjaGi1g1v0440300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING finger protein; TAIR: AT5G01520.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3; TrEMBL-Plants: tr|A0A151T8Z8|A0A151T8Z8_CAJCA RING finger protein 141 family; Found in the gene: LotjaGi1g1v0440300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93624920..93627312) extracted from Lotus japonicus Gifu genome v1.2.
AAGGGGTTTAGTCTGCAAAGAAGGAAGAATCAACATAAAGGAATAGGAGAGATGCGCAAGACTTTCAAGGATTCACTCAA AGCTCTTGAAGCTGACATACAGTTTGCTAATACTCTGTAAATTTTTCTTCTATCCCTTTTCCTTATCTAGAACCCCAACA ATTTTTTTAATTTTTTGGTATGAATGTTGAATTATGTGATTTTGGATAATACCCATTTCTCAAATAGCTGGTTTCTTTAG GTAGATGCTAAATTTCTGATTTTTTTAATTTTTTTTTTTTGCTGTGTTGTTGCTGAACCTTGTATAGAACTATACAGTTC AAATTTCTGTTTTTTCAACTTGTATTTTACATTTTATTTTTATTTTTAATCACTCTTATGCTTAAGCTGAAGAAAGAAAA TAGTGAACTGTACGCTTGAGGTGGGGCTTAATAGGAGAATAAAATATGGGAATTGAGTTGAAGGAAAGGAAATGAAAGGT GGAAGGGGGGGTAAGAGTAAGAAAATGCAATCATGCTCTTGTTGAAGCAAAGGTGTTAAAGTGTTCATTTTTTCTATGGA ATATAGATTTGTAAACCCAAAAAACTTATCATTTTGCTGGCTTTATATGCTTTTTTCAACTGAACCTCTTTTTAAAATGT CTTTTGATTTTGTCATTTTGAAGGAAATGGGGCGCTTCAATTCATTAGTGTCTTTCCCATCATGTGGCAGGGGTGCCTCA GTTTTTGGAAATTTTGTCTCTCCTTTTTGTAAAGAGGTTCCCAATCATGTTAAGTAAAGTCTAGCTTTTTTTCATTTTTT TTTTTGGTACAGTGGTAGATTGAAAGACCCTACTATCTTATTCTGTGTTTAGCAGATAAAATTTACAATTTGTGTGGATG GGGATGTAAAAGAACAAAGAAAAGAAACAACGCATCTGAGATATGTTTGAAATGTTATGTAAACAACAACAAAAATGCAA AGAAAGAAACAAGAGTACAATAAGTTGCTTGTGTCACTTCTAGCTTCCGAGTTTGTTTTGTATTTTAATGCTGTAGGATC TGGCCTTCAATTTTTTGTTTGAACGCTACTGTTTGAACGCTACTGTAGACTTGGATTATTGTCACAACATGAGATGAAGA AGCTTTTATGTGCTTACTTTAAATTTAGATGCTTATCAGTGAAATTCAAGAGACCATTTTCTTTGATGTTTCAATAATAA ACAAAATTCAAAAGAAAACTTGTTGTTATCCTATGTTTTTAACCCGTTCTTTGTGCCGAATATGTTTTGAAACAGTGCTT CTGGTTATCCAAGTGATCAGGATGGTGCCTGCCTCCAGATGAGATTGTCTTACAGCCCAGCTGCTCAATTCTTCCTTTTT CTGGTTCAGTGGACTGATTGCCACCTTGCCGGAGCCTTGGGATTGCTTAGAATTCTTATATACAAGGTGCATACCCTACT TCTTTTCGGTGCTTATCAACACTTCTATAAACATGTTTGGATTCACGTTTATATCTTCCAAAATCACTTTTGCTAGCTAC CATAAAATCTACTAGGAGTAGCTTCTCCCAGAATCGATCCACCGTTAGAATCTACTGTGTATCCAAACATGAACTATCTT TTCCTTTAGACAACCTATTCTAAAACATGTGATCTTCTTGATAGCATGTTTGGATCCGCTTATTTTTCAGCAAAACCAAT TTTGGCACCCAGAAGCTTTTCACATACACAAGCGTCTCTCCGAAATTGATTTTAACTTTAGAATCACAGTGCAGAACTGC AACCAATGTTACTATTTTGTTCTCATGCTAGTGAATGATATACATAGAACATATTCGGTTTGTCACAGGCATATCAGGAT GGGAAGACAACCATGTCCATTTACGAAAGAAAAGCCAGTCTGAAGGAGTTCTATAGTAAGTCCAATTCTACTAAGTAAAT TGTCTTATTGAAATATAGCTGTCAATATCTGCTTGAGACCATGCCATGTGATAATTAAGTTTTGTTATCTTTACCATTTT ATAGGAAAGTGCTTGGAAATCCAAATGTAGTTATGGATTACTTTACACTCTCTATTAACAGGTGTGGTCTTTCCCTCTTT ATTGCAACTTCACAGAGGAATCACAGATGTTGAAGAGAGGAAACAGAAACATCTATGTGCTACTAGGTACAAGCGTAAAG ATTTAACAAGCAAAGGAAAGCTCTCTGAAATCGACATAGAGAGAGAAGAAGAGTGTGGTATTTGCATGGAGATAAACAGC AAGGTTGTATTGCCCAACTGCAATCACTCAATGTGTATGAAATGCTACCGAGACTGGTGAGAAATGTTTCGTACAGAATA CTTCTGATGATCTAATGGTAATAAGGCTAAATAATTGAATGAAGCATGCCCATTGAAAATAATGATTCAATAG
CDS sequence (LotjaGi1g1v0440300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCAAGACTTTCAAGGATTCACTCAAAGCTCTTGAAGCTGACATACAGTTTGCTAATACTCTTGCTTCTGGTTATCC AAGTGATCAGGATGGTGCCTGCCTCCAGATGAGATTGTCTTACAGCCCAGCTGCTCAATTCTTCCTTTTTCTGGTTCAGT GGACTGATTGCCACCTTGCCGGAGCCTTGGGATTGCTTAGAATTCTTATATACAAGGCATATCAGGATGGGAAGACAACC ATGTCCATTTACGAAAGAAAAGCCAGTCTGAAGGAGTTCTATAGTGTGGTCTTTCCCTCTTTATTGCAACTTCACAGAGG AATCACAGATGTTGAAGAGAGGAAACAGAAACATCTATGTGCTACTAGGTACAAGCGTAAAGATTTAACAAGCAAAGGAA AGCTCTCTGAAATCGACATAGAGAGAGAAGAAGAGTGTGGTATTTGCATGGAGATAAACAGCAAGGTTGTATTGCCCAAC TGCAATCACTCAATGTGTATGAAATGCTACCGAGACTGGTGA
Protein sequence (LotjaGi1g1v0440300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKTFKDSLKALEADIQFANTLASGYPSDQDGACLQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYQDGKTT MSIYERKASLKEFYSVVFPSLLQLHRGITDVEERKQKHLCATRYKRKDLTSKGKLSEIDIEREEECGICMEINSKVVLPN CNHSMCMKCYRDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 173 | 171 | 2.2E-96 | – | |
| PANTHER | 3 | 173 | 171 | 2.2E-96 | – | |
| Gene3D | 129 | 173 | 45 | 3.4E-8 | ||
| SUPERFAMILY | 135 | 173 | 39 | 1.39E-7 | – | |
| ProSitePatterns | 161 | 170 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0440300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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