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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0445800 |
| Transcript ID | LotjaGi1g1v0445800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT2G38320.1 TRICHOME BIREFRINGENCE-LIKE 34; Swiss-Prot: sp|O80919|TBL34_ARATH Protein trichome birefringence-like 34; TrEMBL-Plants: tr|G7KT84|G7KT84_MEDTR Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein; Found in the gene: LotjaGi1g1v0445800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94479531..94482254) extracted from Lotus japonicus Gifu genome v1.2.
TTGCAACGAAGCTTCATAAATGATCAGGAAGACACGGTGCAACAACACGAAGCTACAGAAACGAAGAAGCAAAACAAACA ATGGCAAAGACACCCCAAATAGTGGTAGTAGGGAGCAGTACTTGGGGAATCAGAAACATCTTTCATTCTCTTCTAGCCAT CTTAACCACTCTTCTAGTTATCACGACCATTTATCTAACACAAGAGGGAGCACAATTAAAGTCTCCAAAAACAAATAATG TCTCTTGTGATGAGTCATTGTCATCATCAAGTTCAAAATGTGACTTGTTCTCTGGGAAGTGGGTTTTTGATAACGAATCT TATCCACTTTACAAAGAGCATCAATGCAGTTTCATGTCAGATCAATTGGCTTGTGGGAAGTATGGAAGGAAGGACCTGAG TTACCAGAACTGGAGATGGAAGCCCCACCAGTGTGACCTTCCTAGGTGTCTCTATCCCACCTCCCCTGCCTTGACATTTT TTTAATCGGTCCCAATATTTGGACCCCCGCAGCGTGGCGTCAGCGGACATATATAGGCTTTCTGGCAGTTAAACCGCCAC AAAACCTGTATGTCACTGGTGTGTCGCGATTGCACGGTGGTTTACAAATCTTTTTCTTTTTGAAATCGAGTTGTTATAGG GTTTACCTACATGTTATATGAAATATGGTTTATCAGGTTTGGCTATGTTTTTGAGGTTTGTGTGGAATGTGGTTCTTTCT ATGTTGATAAGGTTCAACGCCACAGCATTGCTTGAGAGGCTGCGAAACAAGAGGCTTGTGTTTGTGGGGGATTCACTTAA CAGAGGCCAATGGGTTTCCTTGGTTTGCCTTGTTGATTCTTCATTGCCCCAAACTCTCAAATCCATGCATTCCAAGGCCA ATGGTTCACTAAACATTTTCAAGGCCAAAGTAAGTGTTCTTCACCCTCATATCAGCAAGTAGGAAATATAAAAATGCTCT ATCTTGTTTCTTTTATGTTTGTTTCTTTATGATTCTACAAGTAATCAATCACATTAATTTGCAACTACTTGTGTTGCTAA TTGTTGGCTAATTGACACATTAAAAATGAAGGAATACAATGCAACCATTGAGCACTATTGGGCCCCATTACTTGTAGAAT CAAACTCAGATGATCCAGTAAACCATAGGGTACCCGAGCGCACTGTGAGGGTCAAGGCCATTGAAAAACATGCAAGGTAC TGGACTGATGCAGATTATCTAGTCTTCAACACTTACCTCTGGTGGAGAAGGCCTGTCATGAATGTTCTGTAAGTAGTGCA ACTAACCTAACCATTCATTTCCAACCACCATATGATATGATTTTGTTATTTAATTTGGACTATCATAGGTTCATTTATTT ATCCTACTCCACTTTACAAATTGATTTTGACTGTGACAATTGAACAAACAGGTGGGGATCATTTGGAGAGCCAAATGGGG TTTACAAAGGTGTTGAAATGTTGAGAGTCTATGAAATGGCCCTAAGGACCTGGTCTGATTGGTTGGAAATCCATGTCAAT CGTACCAAGACCCACTTGTTTTTTGTTGGCATGTCACCCACTCATGAAAGGTACTATCCACAGGGCAAGTATATATATCA TTTTCTCATTGGTTATATATGGTATATATCTATCACAATTGCATTCCCCACTCTTACATGAGTTCAGAGGAAAAGAAAGT GAACCTATATATATAAGAGTGAACCTATCAGTACATTCCATTTAACATTTTCTAATACTTTGATGGCAATCCTTTGTCAC ATCCAACTGAACCCCCACCCAAATGAGAGAAAAAACCAAAGCTGTGCTCACATCGATATTTAGTTTTAAACCAAACATGC TAGTGGATCACTGTTTTGAACATATTTTCACTTTCCTCACTTTACATATTTCAAAGATTTTCAATACAGCATCTTACTAA TGTGCACATCATTATCCATATACCCAAAAATTTGAATACACATATCAGCGCACTAGCCCAGAGAATTAGCTCTATAATTC TTCTAGAATCCATCAACATATTAGATTTGTAACACTAAAAAAAATTGCAGGGCTGAAGAATGGGGAGCAGCCAAGGGGGA TACTTGCTACAAAGAAATAGATATGATAGCGAAAGAGGGGTATTGGGGGAAAGGGTCTGATCCTAAAATGATGCATGTGG TAGAGAAGGTGCTTGATGATTTGAAAACCAGAGGTTTGAATGTTCAAATGCTTAACATCACACAGCTCTCAGAATACAGA AAAGAAGGTCATCCATCTATCTACAAGAAGCAGTGGGAACCTCTAACCAAAGAACAGATTACAAATCCAAATAGTTATGC AGATTGCATACACTGGTGCCTCCCTGGAGTTCCTGATGTGTGGAATGAGCTCCTTTATGCTTATATTTTCAACCAATAAC ACACATTTTCCATGGCAAGCATGGAAATCAGTGTTTTGTGTAAAAATGACACATTTATATAGCCCCACTTCTCTTTCTAT TTAATAATTTTACAACATCCATACTGCAAAGCACCTACTTGTTGAGATTCATTGAACTAATCAGCTAAATTACTCGAGCA AACTCAAAAACAACTTAGAAGTTAGAACCCATTTAGATGCAAACTAAAGAAGCTTAAAGAATGCTTTTTCTAGTAGGTAA GCCCCGACAAGCTCCAATAAGCCATATCCAAACGGGATCTTATGATGAAAAAATTTAGGGTTAATCCTCTAATTGGTCCC TGTG
CDS sequence (LotjaGi1g1v0445800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAGACACCCCAAATAGTGGTAGTAGGGAGCAGTACTTGGGGAATCAGAAACATCTTTCATTCTCTTCTAGCCAT CTTAACCACTCTTCTAGTTATCACGACCATTTATCTAACACAAGAGGGAGCACAATTAAAGTCTCCAAAAACAAATAATG TCTCTTGTGATGAGTCATTGTCATCATCAAGTTCAAAATGTGACTTGTTCTCTGGGAAGTGGGTTTTTGATAACGAATCT TATCCACTTTACAAAGAGCATCAATGCAGTTTCATGTCAGATCAATTGGCTTGTGGGAAGTATGGAAGGAAGGACCTGAG TTACCAGAACTGGAGATGGAAGCCCCACCAGTGTGACCTTCCTAGGTTCAACGCCACAGCATTGCTTGAGAGGCTGCGAA ACAAGAGGCTTGTGTTTGTGGGGGATTCACTTAACAGAGGCCAATGGGTTTCCTTGGTTTGCCTTGTTGATTCTTCATTG CCCCAAACTCTCAAATCCATGCATTCCAAGGCCAATGGTTCACTAAACATTTTCAAGGCCAAAGAATACAATGCAACCAT TGAGCACTATTGGGCCCCATTACTTGTAGAATCAAACTCAGATGATCCAGTAAACCATAGGGTACCCGAGCGCACTGTGA GGGTCAAGGCCATTGAAAAACATGCAAGGTACTGGACTGATGCAGATTATCTAGTCTTCAACACTTACCTCTGGTGGAGA AGGCCTGTCATGAATGTTCTGTGGGGATCATTTGGAGAGCCAAATGGGGTTTACAAAGGTGTTGAAATGTTGAGAGTCTA TGAAATGGCCCTAAGGACCTGGTCTGATTGGTTGGAAATCCATGTCAATCGTACCAAGACCCACTTGTTTTTTGTTGGCA TGTCACCCACTCATGAAAGGGCTGAAGAATGGGGAGCAGCCAAGGGGGATACTTGCTACAAAGAAATAGATATGATAGCG AAAGAGGGGTATTGGGGGAAAGGGTCTGATCCTAAAATGATGCATGTGGTAGAGAAGGTGCTTGATGATTTGAAAACCAG AGGTTTGAATGTTCAAATGCTTAACATCACACAGCTCTCAGAATACAGAAAAGAAGGTCATCCATCTATCTACAAGAAGC AGTGGGAACCTCTAACCAAAGAACAGATTACAAATCCAAATAGTTATGCAGATTGCATACACTGGTGCCTCCCTGGAGTT CCTGATGTGTGGAATGAGCTCCTTTATGCTTATATTTTCAACCAATAA
Protein sequence (LotjaGi1g1v0445800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKTPQIVVVGSSTWGIRNIFHSLLAILTTLLVITTIYLTQEGAQLKSPKTNNVSCDESLSSSSSKCDLFSGKWVFDNES YPLYKEHQCSFMSDQLACGKYGRKDLSYQNWRWKPHQCDLPRFNATALLERLRNKRLVFVGDSLNRGQWVSLVCLVDSSL PQTLKSMHSKANGSLNIFKAKEYNATIEHYWAPLLVESNSDDPVNHRVPERTVRVKAIEKHARYWTDADYLVFNTYLWWR RPVMNVLWGSFGEPNGVYKGVEMLRVYEMALRTWSDWLEIHVNRTKTHLFFVGMSPTHERAEEWGAAKGDTCYKEIDMIA KEGYWGKGSDPKMMHVVEKVLDDLKTRGLNVQMLNITQLSEYRKEGHPSIYKKQWEPLTKEQITNPNSYADCIHWCLPGV PDVWNELLYAYIFNQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 10 | 412 | 403 | 1.1E-217 | ||
| PANTHER | 10 | 412 | 403 | 1.1E-217 | ||
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| Phobius | 41 | 415 | 375 | - | – | |
| Pfam | 66 | 119 | 54 | 7.5E-22 | ||
| Pfam | 120 | 410 | 291 | 2.0E-95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0445800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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