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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0446000 |
Transcript ID | LotjaGi1g1v0446000.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A072VHA4|A0A072VHA4_MEDTR B3 DNA-binding domain protein; Found in the gene: LotjaGi1g1v0446000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94488835..94495767) extracted from Lotus japonicus Gifu genome v1.2.
CCGTCCTTAGCTGACTAGGCTTGCTACTAGACCGTTGACCGGTCAAAATTGAGCAAAAGGACTTAATTAGATTAAAAAGT CAATTTTAGGGATCCAATTTGATGCGAAAATTTTACAGGGACCAAATTTGATTCCCTTTACAATTTCAAGAACCAAAAGT TCATTTAAGCCTAGAAAAAATGATTGTTTATACAAATAACAAAACACAACACAATATATCAATCAAACTATAAATTTTCC GCATTTATCTTTTACTTCATGCCAAGACTCAAAGATAGTCTCGATCGTAGCCTCTATATATCCTCCAGCTAGCACGTGCT TGAGCTTCATCTCTTTTCTTTTTTGTTGAAACACGCTTCATCGCTTCATATATAAAACAAGTTAGCCATAAAACACAAAC CTGAAAAAAGTAATTCATATTCTAAAAGAAACTGTTTCTATAAGATAATCAATTGAAATTAAATTCGCTTAATTCAATGT GTAAACCGAAAACCCAAGTTTGCAAAATGGTACTCGAATATTTCAAATAAGAAACCAATTGTTTATTACACATTAAAACT CAACGGGAAATTAAAAGAAATTATTTATATAAATTAGTATTCAATGAATAATTGATTAGTAATTTACTTTAATGAATAAT AAAATTCAAACAATAACACATTTTGAATTCTGACAATATATGAAAGGGGGCGCGTTTACTATGGACCACTTTTTTGTGGT CTATAGTTGCATCACCTGCTTTTAACCTGCTACTGCAGGTTTTGCAGGTAATTTGTAATTTTTTAAAAATAAAATAATTA ATATATTATAGTATAATTAGTTATATAGTTAGTGAATGTTAATATGATTTAAGCTAAGTGGATCTGGTAACTCACCATTC AACCCGATTTCATCTTCTTCATCAACAATTCTCAAATCTGACCAACACCCCCAACCACCATCTGAATGCTTTATCACAAA TAAAAGCTAAACAATTGATGGAGAAAGCCAATCAAACCCGCAGCACATATCAAATATTCCATCCCGTTTTGATAACAGCA CTATCTCAATCCACCAAACTTGCAATGTCATATTCCCAAAAAAGCTTGAAAAAAGTTAGCCATCAAACCTGCGTTGTTTA TCTTCTAGAGCACATTCCAGGAAATGGAAACAAAATTAACCAATACTGATGCTAAAATTACAAAAACTTTACCAAAATAT ATAGAAACTAGCCATTAAAGCCTCCTTTGATCATTGTCTTTGCAGATTATAGAAACAACAAGAAGAAGACATAGAAGCAA AAAAATACTCAGATCCATCACCGCAATCATCTACCGTAATCATCCACAGAAGAAGAAGAAGAAGAAAACCTAGAAGAACA AAAACCGAGAATAAAAAACCCAAATTCGTCACCGCAGTCAACTAGCATAATCATCTACCCAGAAGAAGATGAAAACCCAA AACGCCAGATCCGGAACGAAGAAACTCCAGATCTATGGTTTTCCACATGAAATTTTTGGAGCCTGCTCGCCGGAAACGAG TGGGACTTGGTGATTCGAGCGAGAGGAAGTGAAATCATCTTGGGTTTTCTTTTTTCTGGGGCTGCTATGGTTGTTGTTGG CGGTGGGATTGGTGCGGCAGGAGTTGGTGGATGCGGTGGTGGTGGATGCTTTGACGCCGGAAATGATGGGGTTGTGGTGC GGCCGGAGTTGACGACTGTGTGGTGGCGTTAGTCGCCGGCGGTGAAAATGGTGCTCTCTGGTTGAAAAGGTTGAAGCTTT GAGAGAGAGAAAAGGGGAGAAGATTAAGGGGTAATTAATTAACTTGAATATATTAATTATTTGTATTTTCAAAAATTCCA AAAATACAAAATTACCTCCAGTAACAGGTTATTAGGTAGTGGTCTAAGTTTACACCACCAAAAAGTGGTGTAGGTTAAAT TTTCCCATATGAAAGGTTTCCAAAATCAAAAGTGCGCAACAAGCAAAATTAGCATTTCCCAATACATAGAGCCACAAGTC ATCAGTACCTATATGAGTCATTATTATTACTATTTATAGGTTAGGTTATTATGACTGACCGTTAGGAGAGAGTAAACTCC AAAATCTAACCCTCTCACCATAAGAATAAGATGATCAAGTTCAATTTCCTTAGAAGTTGCAATTTCATCACTTTGTGTAT GGTTGCTATGGAAGCTCCAATATTGGCATTGCCTCGCTTCTTCAAAGTGATTCATGATCACGAGCAACAAAAAGAAACAG TAAGCGGTCTTTTAACATTTTTCATATATACAAAAAATGATTCAACTATAGTCCTTTTTCTCATTTGTATTCGATCTTAT TTTCTTTCTAAACATTGCTGAGTTTAGATAAAGATCGATGGCTTGTTTAATCTTTCTTGTACTCAAAATAATCATGTGTT GCCATATTACTTGCATGCAGAGGATTCCCAAGGCTGTTGCGGACAAACATTGGAAAGGGTTATCAAACCCTATAGTTCTT AAACTCCCAAATGGTGATGATGGATGGAAAATATTTTGGGAGAAACGTGATGATGGTATTTGGCTTCACGAGAATTGGGA AAAATTTTCAAAGTTGTGCTCGTTAAGATTTGGATCTCTTTTAGTGTTTGATCATAAAGGTGCATCAAGTTTCCAGGTTT CAATCTTTGATCCCAACACTATAGAACGCACATATGATAGTGAAGGTAGACATGATCATGATTCTGTTCAGATTCTGGAA ACACCACCGCTTAAGAAAAAGAAAACTGGGTCAAATGGTGAACCTGAGAGTCCTCCATCTGAAAGGACAAAAAATAACGG CAAGAGAAAAATCAATGTGGACATTGATGCTACCCAACAAGAAGTCTCAGGCGAGTTCATCATTCCCCCTTTATATTTTT CTTTTCATTTTTGTTACATTTCACTTTTTTATTCAATTTATTAGAAATATCATGTTATTTTATTCAACTTTTTTTGTTTG TATCCATTTTTTTTATTTCTATTCCTTTTTTCACATATATATATATATATATATATATATATCTTCCTTTTGTTTTTTTA TGTGCAGATTCAGGAAATCCAAACATGAAATCAGATAAATTTGAGATTACTGTAAATACAAATTACCCGGTAATATTCTT TCTGCATAGAAATGTATTTTAATTTCCTTTTCATGAATTAATTCTATGTACGTAGTGGTTGGTTGTGGGTACAACGTAAC TAAGGATTTTTTTTAATCCTTTTTGCAGAACATACCACAAGAATTCATGAAGAAACATAACACGATTCATGGAAATTATG TGAAGTTGAAAGTAGAGAAAAGTTCTTGGGATGTGAAAGTGTTAAAATATCTACGACTCACTAGGTTCTCTGATGGTTGG CGTGCATTTGTGAAAGAATGCGAATTGAATGTTGGAGACACTTGTGTGTTTGAGATGGTGGATGAGAAAAAACTTGAGTT GCAGGTTACAATCAATAAATGCCACCGCTGAGCACTAGCTAGGTGTTCTTCATGCTAATTACTCTATCATGATCATGGAC TAAATGTTTAGAACATTAATTTCTGTATCTTTCAATTAATTTTGCAAGCAACTATGTCATATATGAACTCTGAACAATAT CATATCAGCTAATCACTACAAAAAAAAAACGCTATTTAGTGGGGTTATTTAGCGGGGGTTTTGATAACCTCCGTAAATGT GGGTAATTTTTAATAGTTAAGGGGGGTTTTAATAACCCCCGCAATTTTTTTATTCATTAACCCTCTCACTCTCGCACTCT CACTCTCAGAACTCTCACTTCTCAGTCTCGTTCTCGTTCTCGTTCGCCATGGAAGCTCACGATTTCAAGCGATTTCCACC GATTTGTTCTCGTTTTGAACCTATTGATCTCGTTTTCCACCGATTTCCACCGATTGCAACTTGATTTCCGCCGATTTCAA CCTCCACAGATTTCAACCACCGCACACCGCCGTAGCAACAGTCTCCTCCACCGTCGGTATGACCTTGTTTTCCACCGATT TGATCTCTTTTTCACCTTTGCTTTTCTTTGCTTCAAAAGCTGACTAACGGTTTCTTCTTCTTCATTCGCAGTTCTCTCTG CCATTTTCTCATGGATCCATCGCTCAGAGACTCAACAACTTCTACTCCGTCGCATGCTGCATTCTCTGGTACCGATTTTT TCTTAATTAACCTATTCAGATTTCTAAATTAGGTTTTCATTAGTTGATTTGGGAAATTGGGTCTGGTTTGCAAGTCAGAT TAAGTGGGTAGTTGTTACTGGTTTGAGGAGTTTGTTCCTCTTGGGTTTGTTGATTAAGTGTGCACTTGAACAGGTTTTTG TGTATAGTAGAATTGATCGTTATGCAGATGTGAAACTCCAGATATTCTATATGTAGTTGAGGGATGCTCTTGGAAGGATA CTTATGAGATATACAGGATCTGTTTCTCTGATTTCTTGTCATGTCAAGGCGTAGAAGGTTAACAAGGGTCATGTGAGGAG TTAATACGATGTGTTGCAGAACCATTGCCTTCATTTTGTTGTCAAAGAATCAATTAAAAGAACAGGAGGGTGGAAAGTGC TTATCTAGCTATTTTTTTGTACTGTTGATCAATTTAAGGTTGTTGATACTTTGTTTAGAAGTAATTCTCCCTTTGCCCAA TTGGATATCCTTTAATTGGCCAAGTGAGGAAGAAGCTTTGACTTATTTCTTTATTGTTATTTTTTTCATGTTGATCCTCT AGGATAGGTAGAGAATTTTGAGGTCTTAGTGATCATAATTATGGCCACATTGGTAATATTTTTTCATGAATGTTTACTAT CTCAGTTTGTGACTTGACCGTGACTGCAATTCGAATGTTATATGGTGGATGCTATTGCTGAGAGTGAATTTTTGTTGTTG TGTTGAATGTGTTTTGAATATGATGATGTGCAGAGTTGTATCTTTGGATAGCTTCTTAGATAAAATTCAGATTTGGCGTT GAACAAGTGATTTGAATCATTGATCTTAAGTGTAAAAGCATAAATTAATGTTACATTGTGGTTGCTGAGAGTGAATTTTG TTGTTTTGTTGAATGTGCTTTGAATGTGCTGATGTGCAGAGTTTTATATATTGGTCATTGTTTGTTTGACAGCATTGCTG ATGGCTGTTTCTTTATCTTCCTGTGCTTTGAATCATTGGTGCTTTTTATATTTTCTTGCTTTTTATAATCCAACATATCA TGATTTTGTTTGAGTAACTTGTCCTTTAATTGTGCTGTTCGCTTCACTATTACATATCATTAAAAGCATATCATGAATGA AAATACATATTGAGATATGCAAGATCAGATAGCAAGGGGAATAAGAGAATATAATGCAACAAAAGTCAAAGAGAAAACAA ATGATATTGAATCTTCTAGCTATCTTCTCCTGCCTTGTTGGCTCCAAGGCATCTTAAACTTGTTGATCCTCCCAACCCCC AACACAAATACCCCCAAATGAAAAAAGTTATATTTCATGTCTCTTTCATTCTACATTAATTTCCAGCAGTCATAAGGATT CTTCCAAGACTTTAGAGGAGAGCTCATAGAAATTAATTTCACCCAAGGATCTGAGTCACTCCTATTATTTTAACAGAAAT GCATCGCATTCAAGTCTGTGTGTTTAAAGAAAAGTCCTGCTCCTATGTTTGTCTTGTCTCCCTTACTGTTCATCTTAGTG TCCTATATGTTTGTAGCTTTTGGTTTCCCCATTTTACACTGTGAGAATGTAACATGCTGTTTGATTATCTCCTTTTTATG CTGTTTAACAACAATGTATATCTTGGATGAATCAAAATGACAGTTTTTGTATGAGAAGTTTCACTTTCTTCATACAATAT AAATCCCACATTTTATATCAGCTATTTTAAGATCCCTGAAGAAATGGCTCAATTCTTTGCTCCTGAATCACATGTATGTG ATTTTAAATTCTTAAGCTTTATTTATGATTTTAGTTTGGCATGCTTGTTTGAATGGATTTGCACTGAGAAGTCTGTCAAA ATTACAACTAGTAATACATATCAGAAGTCTGTCAAAATTCCCTTTTGTGCATGAAACTAACTTCTTTTCATCTAATGTCC TATCCCTTTCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGACGCC TTATCTTTTTCTCTACTTCTGTTTTGACACAACAGGGTGGGGTCCAGTCCAGAGCCAATTCTGAATTTCCAAACAACCAC TAATTTGCGGTTGTTCAGGATAGTGAGTGACTTTTGGCATTTAAATGCTTCTTTTTTCTCAAAATTAACATTAATCTGCA TGTTTAATCAGCTTATCTTTCTTCATAATCAATTGTAGAAACTAGAAACATTGTGCTATATGTAAGTACATTTAAGGAGT TTTTCATTAGTTAGAATAGAAATCAATAACTGATTTTTTGTTGTTGGTTTGTGTCTGAATGGTAACTGTCAGTGATTGGT TCCATCATTTTATTTTGCTGAATTTAAATTAACCCAAAAGATCAATCAAATCATGTAGAGACAGATTAAGCATGTTATGA TTTAGATATTGTAGAGGACCAATGGTAACTGTGTATTAAGACTTTAGCTAATGAGTGGAACAATCAAGTCTTTGTTGCCT GAGGACCTGGAAAACCTTAGAAGGGACTGTGACATATTTCAGAAGGACCAATATCAAAGGTTAAGAAACTGAAGCTGGTT TATGTAAGCTTGTTGTTCTTGTGAATTAGTAGCAAAATTGAAAATGAGATGTATGCTCACACAGCCTCATATGCCTAGGA ACACAACATATTTATGCAGGTTAAGTATAAGCAGTTAAGCATGAACTTTTGTAAAACTTGTTAGAGTGTCTTGTTGTCTT ATATGTAATGCTAATTAGTGTATTTCTTTTTATCACTCTTCTTATAAGTATTT
CDS sequence (LotjaGi1g1v0446000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAGTTCAATTTCCTTAGAAGTTGCAATTTCATCACTTTGTGTATGGTTGCTATGGAAGCTCCAATATTGGCATT GCCTCGCTTCTTCAAAGTGATTCATGATCACGAGCAACAAAAAGAAACAAGGATTCCCAAGGCTGTTGCGGACAAACATT GGAAAGGGTTATCAAACCCTATAGTTCTTAAACTCCCAAATGGTGATGATGGATGGAAAATATTTTGGGAGAAACGTGAT GATGGTATTTGGCTTCACGAGAATTGGGAAAAATTTTCAAAGTTGTGCTCGTTAAGATTTGGATCTCTTTTAGTGTTTGA TCATAAAGGTGCATCAAGTTTCCAGGTTTCAATCTTTGATCCCAACACTATAGAACGCACATATGATAGTGAAGGTAGAC ATGATCATGATTCTGTTCAGATTCTGGAAACACCACCGCTTAAGAAAAAGAAAACTGGGTCAAATGGTGAACCTGAGAGT CCTCCATCTGAAAGGACAAAAAATAACGGCAAGAGAAAAATCAATGTGGACATTGATGCTACCCAACAAGAAGTCTCAGG CGAGTTCATCATTCCCCCTTTATATTTTTCTTTTCATTTTTGTTACATTTCACTTTTTTATTCAATTTATTAG
Protein sequence (LotjaGi1g1v0446000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKFNFLRSCNFITLCMVAMEAPILALPRFFKVIHDHEQQKETRIPKAVADKHWKGLSNPIVLKLPNGDDGWKIFWEKRD DGIWLHENWEKFSKLCSLRFGSLLVFDHKGASSFQVSIFDPNTIERTYDSEGRHDHDSVQILETPPLKKKKTGSNGEPES PPSERTKNNGKRKINVDIDATQQEVSGEFIIPPLYFSFHFCYISLFYSIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
SignalP_EUK | 1 | 26 | 26 | - | – | |
Phobius | 12 | 31 | 20 | - | – | |
Gene3D | 24 | 123 | 100 | 1.1E-18 | ||
SUPERFAMILY | 27 | 122 | 96 | 1.14E-14 | ||
PANTHER | 28 | 162 | 135 | 2.8E-31 | – | |
PANTHER | 28 | 162 | 135 | 2.8E-31 | – | |
CDD | 28 | 120 | 93 | 8.3081E-8 | ||
ProSiteProfiles | 28 | 122 | 95 | 9.263 | ||
SMART | 30 | 122 | 93 | 0.0029 | ||
Phobius | 32 | 210 | 179 | - | – | |
MobiDBLite | 129 | 155 | 27 | - | – | |
MobiDBLite | 129 | 174 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0446000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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