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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0446000 |
| Transcript ID | LotjaGi1g1v0446000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A072VG92|A0A072VG92_MEDTR B3 DNA-binding domain protein; Found in the gene: LotjaGi1g1v0446000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94489701..94492456) extracted from Lotus japonicus Gifu genome v1.2.
GTAACTCACCATTCAACCCGATTTCATCTTCTTCATCAACAATTCTCAAATCTGACCAACACCCCCAACCACCATCTGAA TGCTTTATCACAAATAAAAGCTAAACAATTGATGGAGAAAGCCAATCAAACCCGCAGCACATATCAAATATTCCATCCCG TTTTGATAACAGCACTATCTCAATCCACCAAACTTGCAATGTCATATTCCCAAAAAAGCTTGAAAAAAGTTAGCCATCAA ACCTGCGTTGTTTATCTTCTAGAGCACATTCCAGGAAATGGAAACAAAATTAACCAATACTGATGCTAAAATTACAAAAA CTTTACCAAAATATATAGAAACTAGCCATTAAAGCCTCCTTTGATCATTGTCTTTGCAGATTATAGAAACAACAAGAAGA AGACATAGAAGCAAAAAAATACTCAGATCCATCACCGCAATCATCTACCGTAATCATCCACAGAAGAAGAAGAAGAAGAA AACCTAGAAGAACAAAAACCGAGAATAAAAAACCCAAATTCGTCACCGCAGTCAACTAGCATAATCATCTACCCAGAAGA AGATGAAAACCCAAAACGCCAGATCCGGAACGAAGAAACTCCAGATCTATGGTTTTCCACATGAAATTTTTGGAGCCTGC TCGCCGGAAACGAGTGGGACTTGGTGATTCGAGCGAGAGGAAGTGAAATCATCTTGGGTTTTCTTTTTTCTGGGGCTGCT ATGGTTGTTGTTGGCGGTGGGATTGGTGCGGCAGGAGTTGGTGGATGCGGTGGTGGTGGATGCTTTGACGCCGGAAATGA TGGGGTTGTGGTGCGGCCGGAGTTGACGACTGTGTGGTGGCGTTAGTCGCCGGCGGTGAAAATGGTGCTCTCTGGTTGAA AAGGTTGAAGCTTTGAGAGAGAGAAAAGGGGAGAAGATTAAGGGGTAATTAATTAACTTGAATATATTAATTATTTGTAT TTTCAAAAATTCCAAAAATACAAAATTACCTCCAGTAACAGGTTATTAGGTAGTGGTCTAAGTTTACACCACCAAAAAGT GGTGTAGGTTAAATTTTCCCATATGAAAGGTTTCCAAAATCAAAAGTGCGCAACAAGCAAAATTAGCATTTCCCAATACA TAGAGCCACAAGTCATCAGTACCTATATGAGTCATTATTATTACTATTTATAGGTTAGGTTATTATGACTGACCGTTAGG AGAGAGTAAACTCCAAAATCTAACCCTCTCACCATAAGAATAAGATGATCAAGTTCAATTTCCTTAGAAGTTGCAATTTC ATCACTTTGTGTATGGTTGCTATGGAAGCTCCAATATTGGCATTGCCTCGCTTCTTCAAAGTGATTCATGATCACGAGCA ACAAAAAGAAACAGTAAGCGGTCTTTTAACATTTTTCATATATACAAAAAATGATTCAACTATAGTCCTTTTTCTCATTT GTATTCGATCTTATTTTCTTTCTAAACATTGCTGAGTTTAGATAAAGATCGATGGCTTGTTTAATCTTTCTTGTACTCAA AATAATCATGTGTTGCCATATTACTTGCATGCAGAGGATTCCCAAGGCTGTTGCGGACAAACATTGGAAAGGGTTATCAA ACCCTATAGTTCTTAAACTCCCAAATGGTGATGATGGATGGAAAATATTTTGGGAGAAACGTGATGATGGTATTTGGCTT CACGAGAATTGGGAAAAATTTTCAAAGTTGTGCTCGTTAAGATTTGGATCTCTTTTAGTGTTTGATCATAAAGGTGCATC AAGTTTCCAGGTTTCAATCTTTGATCCCAACACTATAGAACGCACATATGATAGTGAAGGTAGACATGATCATGATTCTG TTCAGATTCTGGAAACACCACCGCTTAAGAAAAAGAAAACTGGGTCAAATGGTGAACCTGAGAGTCCTCCATCTGAAAGG ACAAAAAATAACGGCAAGAGAAAAATCAATGTGGACATTGATGCTACCCAACAAGAAGTCTCAGGCGAGTTCATCATTCC CCCTTTATATTTTTCTTTTCATTTTTGTTACATTTCACTTTTTTATTCAATTTATTAGAAATATCATGTTATTTTATTCA ACTTTTTTTGTTTGTATCCATTTTTTTTATTTCTATTCCTTTTTTCACATATATATATATATATATATATATATATCTTC CTTTTGTTTTTTTATGTGCAGATTCAGGAAATCCAAACATGAAATCAGATAAATTTGAGATTACTGTAAATACAAATTAC CCGGTAATATTCTTTCTGCATAGAAATGTATTTTAATTTCCTTTTCATGAATTAATTCTATGTACGTAGTGGTTGGTTGT GGGTACAACGTAACTAAGGATTTTTTTTAATCCTTTTTGCAGAACATACCACAAGAATTCATGAAGAAACATAACACGAT TCATGGAAATTATGTGAAGTTGAAAGTAGAGAAAAGTTCTTGGGATGTGAAAGTGTTAAAATATCTACGACTCACTAGGT TCTCTGATGGTTGGCGTGCATTTGTGAAAGAATGCGAATTGAATGTTGGAGACACTTGTGTGTTTGAGATGGTGGATGAG AAAAAACTTGAGTTGCAGGTTACAATCAATAAATGCCACCGCTGAGCACTAGCTAGGTGTTCTTCATGCTAATTACTCTA TCATGATCATGGACTAAATGTTTAGAACATTAATTTCTGTATCTTTCAATTAATTTTGCAAGCAACTATGTCATATATGA ACTCTGAACAATATCATATCAGCTAATCACTACAAA
CDS sequence (LotjaGi1g1v0446000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAGTTCAATTTCCTTAGAAGTTGCAATTTCATCACTTTGTGTATGGTTGCTATGGAAGCTCCAATATTGGCATT GCCTCGCTTCTTCAAAGTGATTCATGATCACGAGCAACAAAAAGAAACAAGGATTCCCAAGGCTGTTGCGGACAAACATT GGAAAGGGTTATCAAACCCTATAGTTCTTAAACTCCCAAATGGTGATGATGGATGGAAAATATTTTGGGAGAAACGTGAT GATGGTATTTGGCTTCACGAGAATTGGGAAAAATTTTCAAAGTTGTGCTCGTTAAGATTTGGATCTCTTTTAGTGTTTGA TCATAAAGGTGCATCAAGTTTCCAGGTTTCAATCTTTGATCCCAACACTATAGAACGCACATATGATAGTGAAGGTAGAC ATGATCATGATTCTGTTCAGATTCTGGAAACACCACCGCTTAAGAAAAAGAAAACTGGGTCAAATGGTGAACCTGAGAGT CCTCCATCTGAAAGGACAAAAAATAACGGCAAGAGAAAAATCAATGTGGACATTGATGCTACCCAACAAGAAGTCTCAGA TTCAGGAAATCCAAACATGAAATCAGATAAATTTGAGATTACTGTAAATACAAATTACCCGAACATACCACAAGAATTCA TGAAGAAACATAACACGATTCATGGAAATTATGTGAAGTTGAAAGTAGAGAAAAGTTCTTGGGATGTGAAAGTGTTAAAA TATCTACGACTCACTAGGTTCTCTGATGGTTGGCGTGCATTTGTGAAAGAATGCGAATTGAATGTTGGAGACACTTGTGT GTTTGAGATGGTGGATGAGAAAAAACTTGAGTTGCAGGTTACAATCAATAAATGCCACCGCTGA
Protein sequence (LotjaGi1g1v0446000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKFNFLRSCNFITLCMVAMEAPILALPRFFKVIHDHEQQKETRIPKAVADKHWKGLSNPIVLKLPNGDDGWKIFWEKRD DGIWLHENWEKFSKLCSLRFGSLLVFDHKGASSFQVSIFDPNTIERTYDSEGRHDHDSVQILETPPLKKKKTGSNGEPES PPSERTKNNGKRKINVDIDATQQEVSDSGNPNMKSDKFEITVNTNYPNIPQEFMKKHNTIHGNYVKLKVEKSSWDVKVLK YLRLTRFSDGWRAFVKECELNVGDTCVFEMVDEKKLELQVTINKCHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Gene3D | 24 | 123 | 100 | 2.2E-18 | ||
| SUPERFAMILY | 27 | 122 | 96 | 2.35E-14 | ||
| ProSiteProfiles | 28 | 122 | 95 | 9.263 | ||
| CDD | 28 | 120 | 93 | 1.79883E-7 | ||
| PANTHER | 28 | 285 | 258 | 5.3E-51 | – | |
| PANTHER | 28 | 285 | 258 | 5.3E-51 | – | |
| SMART | 30 | 122 | 93 | 0.0029 | ||
| Phobius | 32 | 287 | 256 | - | – | |
| MobiDBLite | 128 | 174 | 47 | - | – | |
| MobiDBLite | 128 | 155 | 28 | - | – | |
| Gene3D | 178 | 286 | 109 | 3.9E-19 | ||
| ProSiteProfiles | 192 | 284 | 93 | 10.785 | ||
| SMART | 198 | 286 | 89 | 8.9E-5 | ||
| SUPERFAMILY | 203 | 282 | 80 | 7.06E-15 | ||
| Pfam | 209 | 282 | 74 | 2.1E-11 | ||
| CDD | 209 | 284 | 76 | 8.3359E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0446000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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