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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0454700 |
| Transcript ID | LotjaGi1g1v0454700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription repressor; TAIR: AT1G06920.1 ovate family protein 4; Swiss-Prot: sp|F4HNU8|OFP4_ARATH Transcription repressor OFP4; TrEMBL-Plants: tr|V7B5F3|V7B5F3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0454700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95682344..95685593) extracted from Lotus japonicus Gifu genome v1.2.
GGGTAACTCATTTGGTTGAGTTAAAGGTAAAAATAAGTGTTAGAGATAAAAGTACAAGGTTCAAACCCTGAGAAGTAACA TTTGTAATTACTAACAGTACTAACCACAAACATTTGCTTATAAAAAAAACCACCTCAACCCAACTCAGTTTCTTGTATGC CATCCTTTTTGTTCTCTTGTGTGGACCCGAAAAACCCTCACCTCCAATTCCAAAAGTCTCCCACTCTTTTCTACACATCT CACAATGCCAAGAGTGCCAAAGAGGCAGTGACAGTAATCCCCACCTCCAATTCCGTTAGCCTCCTCCTTTTCTTTTCTAT ATATCCCACAACACCAATAGTGCCAAAGAAACTCTGATGGAGTTACCTGATGTCTCACTCTCACCCCTCATTCACCACAG AGAGAAATAGATAGATAGCACCCAACTACTACTTTACAAACAATCAAAGGGAAAGTAGGGAGAGGCCTAGACACAACAGA TTGAGAGAAAGATGGGCAATTGCAGGTTCAGATTATCAGATATGATGCCCAATGCTTGGTTTTACAAGCTCAGGGACATG GGAAGAGCAACAAAGCAAACCCCAACAACACAACCCAGGAAGAAAAAGCAACCTTCACCAGTCTCATTCCCACACTCATC AAAACCAAAGCAACAACCTCACCAGTGCACTCCCAGAAAGTCTTACTACTTCACAAGAGAACTCAACTCACCCAACAACA GAATCCACACTTCACCAGCAAAAAATAACCAAAATGTTCAAGATTCCAATTACCCTGAATCACCCAGAAAATCATCCAAA CAAAGGACCAAGAGAAGAACCACTTCTTCACCTAAGCTTGTAACCCCTTCATCTGCTAATTGCAGCTGCCACAACAACCT TGAATCACATTCCCCACTTGAAAGCTCAGCAGAATCAGGATCCCCTGAACCAGAAAACAGAACAGACAACGTTCTTCTTC CCACTCAGACGGTTTCAGGGTCCAACACTTGTGGCTGCAAGCTGCACTGCAACAACAACACCAATGACATCATCATCGAT GTGGACAACAATTCCATAGTCAGAAAAGATGATAAGCTAGATGCGTATGAGTATGACTCAATTTCACAGCAACCAGTGCT TCCACCAATCTTGACCAAACCAGCAAAGTTCAAAGACATTGTGGTGGATGCAAAGAAGAAAGAAACCAAACCCAGAAGCA GAATCAGAATCACTGCTGCAAATGAAGAACACAATGTAAAAGGGTCACTGAAAGTAAAGATTTTGAAGGAACAACAACAG ATGAAAACCCCAAGTAGGAGATTCTCCTTAACTTCTTCTCCTGGTGTGAGAATTCGGATGAACTCGCCAAGAATCGGAAG CCGGAGAGTTCAGGGACATGGCCGGAAAAGTGTTTCCTCCAGCCGCGGCCGCGGCGGCCGGAGCAGTTTCTCGAATAGTT TCGCGATTGTGAAGTCGTCGTTTGATCCGCAGAGGGATTTCAGAGAATCAATGGTGGAGATGATTGAGCAGAACAACATC AGGGATTCAAAGGATTTGGAGGATCTTCTAGCTTGTTACCTTTCTCTGAACTCAGATGAGTATCATGATCTCATTATCAA AGTGTTCAAGCAAATTTGGTTTGATTTAACTGATAATTAGTAGAAGAAAAGTATCCAAGGAGATTCTAAATGAGTTTCTG ATACACAATTTTCTGTTCATATGTGATTAATATGAAATTTGTTTGTTAAGTTTAATTAATATTTAATGGACTAATTTGGT GCTAATTGCTAAGCCAATATTTGAGCTAAGATTCTGAAGTTTACAAATGCTTCTATCATGTTTGGATCATCTTCTGTGGC CTTAGAATCAACCAGAACTTAGAAGCTACCCATAGAAGTATCTTCTTATGATTGATTATACCTTTAGAATTGAAATTGAA TGCAAAATCCATGAGCAGGTTTTGTACAAGTAGCAGCACAATTGGTAGATAGCTACACTTTTTATGCATTTAGTCGAGAA ATTTATCCTTGAATGATATATTAAAAGAAAGATTTAGTGGAAGATTCCTACCCACTTAATGTGATTTTTGAACTTCTGAT AATTAGTTTCATGGCGGCTGTTGGCTGTGAGATTGGTAATAAAAAAAAATGTCAGAGGTTTTGTGATGGAATTGAACTGA TATAGAATGAAATTTACTCTGCAACTAATGGCTTTGGTCGATAGGAAAAAAAAAAGGGCTTAGGAATTTCAGTCAATTTT TCATTGATGAGGTGAAGAATTCATATTGCATGAAATTTTAAAGTGTGAAATGGTTAGTTCTTACTTCTTACATCCATTTG TACCATTTAATGTGTGTAAGGAAAGGCAAAAAAAGTTTTCCACTATCCTGCATTGTTAGTTTTTTTGTCATCTTCCTTAA CAGAACTTGGAGCACAACATTTGCTTCTGAATTTCAGTACCTTCATGGACCCAAAGTGGTTTGGGAACTACACGTAACTG GCACAAAATTGTATAAATTGTTAATATTTTAAGGGACAGGAAACAGAACCAGCAGCAATAACTGACACCTTCTTCCATTA ATCTTTGGAATTTTTATCATTATTTTTTGTATCCCCAAAAGAAATTGCCCTTTTCAAGTACAAACTCTTGGGTTCGTGTC TTGAATCCCAAAGATTTGAAGGGCTTATATCCTAGCCAGAGTATACAGCTTTTAAGATCTTGGATGCCACCTCAACAACA CACATGACACAGGTACTCAGGAAAAAAGCAATGTTTTTAATTTGCAAGAAAACTTATTATTACATGTACTTTTTTTTTAC ATTTTTTACACATCGAGAAAATGGTACATGTAAATATGCAGCAATTATCACTCTCCTCTTCACAACGTTTCAAAAGAAGA AAAATGCTTTCTATATAGTATGGTAATTAAACCCGAACTCGTGGTACCTCCAATCACAATCCCGATTTTCACAAAAAACC TACATTCACCAGGCTAAGATAAAGACTGAACCCAAACCCAAAGAGCCGAGGATGGAGATGAGTTTTGGGATGCTGGTACC CGCCTCAAATTTGTGCTCGAATGTGCCCAAATGTAATAATTAGATTTTTTGGGTTGAGAATTCAAGTGCGGAGTTAGAGT CTCACATTGGTTAAGTATGAGTGAGGAGAAGGCTTTATAAGAGATATGACCCATGAACCTAATGCCTTAAGGTTTTGGGT TAAGATGTGACGTCGATATCTATTGATATCTTGCTCCTCGGCCCATGAGC
CDS sequence (LotjaGi1g1v0454700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAATTGCAGGTTCAGATTATCAGATATGATGCCCAATGCTTGGTTTTACAAGCTCAGGGACATGGGAAGAGCAAC AAAGCAAACCCCAACAACACAACCCAGGAAGAAAAAGCAACCTTCACCAGTCTCATTCCCACACTCATCAAAACCAAAGC AACAACCTCACCAGTGCACTCCCAGAAAGTCTTACTACTTCACAAGAGAACTCAACTCACCCAACAACAGAATCCACACT TCACCAGCAAAAAATAACCAAAATGTTCAAGATTCCAATTACCCTGAATCACCCAGAAAATCATCCAAACAAAGGACCAA GAGAAGAACCACTTCTTCACCTAAGCTTGTAACCCCTTCATCTGCTAATTGCAGCTGCCACAACAACCTTGAATCACATT CCCCACTTGAAAGCTCAGCAGAATCAGGATCCCCTGAACCAGAAAACAGAACAGACAACGTTCTTCTTCCCACTCAGACG GTTTCAGGGTCCAACACTTGTGGCTGCAAGCTGCACTGCAACAACAACACCAATGACATCATCATCGATGTGGACAACAA TTCCATAGTCAGAAAAGATGATAAGCTAGATGCGTATGAGTATGACTCAATTTCACAGCAACCAGTGCTTCCACCAATCT TGACCAAACCAGCAAAGTTCAAAGACATTGTGGTGGATGCAAAGAAGAAAGAAACCAAACCCAGAAGCAGAATCAGAATC ACTGCTGCAAATGAAGAACACAATGTAAAAGGGTCACTGAAAGTAAAGATTTTGAAGGAACAACAACAGATGAAAACCCC AAGTAGGAGATTCTCCTTAACTTCTTCTCCTGGTGTGAGAATTCGGATGAACTCGCCAAGAATCGGAAGCCGGAGAGTTC AGGGACATGGCCGGAAAAGTGTTTCCTCCAGCCGCGGCCGCGGCGGCCGGAGCAGTTTCTCGAATAGTTTCGCGATTGTG AAGTCGTCGTTTGATCCGCAGAGGGATTTCAGAGAATCAATGGTGGAGATGATTGAGCAGAACAACATCAGGGATTCAAA GGATTTGGAGGATCTTCTAGCTTGTTACCTTTCTCTGAACTCAGATGAGTATCATGATCTCATTATCAAAGTGTTCAAGC AAATTTGGTTTGATTTAACTGATAATTAG
Protein sequence (LotjaGi1g1v0454700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNCRFRLSDMMPNAWFYKLRDMGRATKQTPTTQPRKKKQPSPVSFPHSSKPKQQPHQCTPRKSYYFTRELNSPNNRIHT SPAKNNQNVQDSNYPESPRKSSKQRTKRRTTSSPKLVTPSSANCSCHNNLESHSPLESSAESGSPEPENRTDNVLLPTQT VSGSNTCGCKLHCNNNTNDIIIDVDNNSIVRKDDKLDAYEYDSISQQPVLPPILTKPAKFKDIVVDAKKKETKPRSRIRI TAANEEHNVKGSLKVKILKEQQQMKTPSRRFSLTSSPGVRIRMNSPRIGSRRVQGHGRKSVSSSRGRGGRSSFSNSFAIV KSSFDPQRDFRESMVEMIEQNNIRDSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 381 | 381 | 5.6E-120 | – | |
| Pfam | 1 | 42 | 42 | 5.6E-20 | ||
| PANTHER | 1 | 381 | 381 | 5.6E-120 | ||
| MobiDBLite | 27 | 60 | 34 | - | – | |
| MobiDBLite | 72 | 153 | 82 | - | – | |
| MobiDBLite | 72 | 99 | 28 | - | – | |
| MobiDBLite | 111 | 153 | 43 | - | – | |
| MobiDBLite | 286 | 313 | 28 | - | – | |
| MobiDBLite | 296 | 313 | 18 | - | – | |
| TIGRFAM | 318 | 380 | 63 | 1.1E-23 | ||
| ProSiteProfiles | 319 | 378 | 60 | 19.728 | ||
| Pfam | 323 | 379 | 57 | 2.6E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0454700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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