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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0455500 |
| Transcript ID | LotjaGi1g1v0455500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-specific lipid-transfer protein; TAIR: AT5G59320.1 lipid transfer protein 3; Swiss-Prot: sp|Q9LLR7|NLTP3_ARATH Non-specific lipid-transfer protein 3; TrEMBL-Plants: tr|I3SHY1|I3SHY1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0455500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95837265..95845195) extracted from Lotus japonicus Gifu genome v1.2.
GTACCCCTTGTACTTCTATTCAATATATTTCTAATTGCCTAATATAAAAAAAAACTCATGTATAAATATGTACGCACGTG CTATTCCATAAATAGTGAGAGGAAACACCAAACAATCAACCATATTATAATAACCACCAATAGCTATGGTTTAGCAGCTT CCTAGTTCCCCTGACGCGATATCCACAAACCAAAAATTCATATCCCCCGAAGAAGCCATCACTCCTCGAAACACGACACG AGATACCATTTCCGAGTTTCAAAGCTATTAATATTTTCCAAACTAGCCTTTGGCATTTTGCTAGTCGTCATCATCATCAT TATCTTCACGGGTAAAACAATATTTTTCCACATAGAACCTGTTGTTATACATGATGGCTAGCACATTCAATTGCTTGGCT CTCATAATTTGCATGGCGTTGGGCGCATCCATGTTAGCCACGGCTAACTTGACGTGCTGCAAGGTGAAACCTACTATGGA CGCATGCAAGTGCTACGTGACCAGCGGTGGAAACGTAGTCCCTCAGAAGTGCTGCCTTGAGCTCATGAACCTGAAAAACA ATGTGATGAATTCTGCCCTTCATCGCAGACAAGCTTGCCGGTGCATTGTTGATGCTGCTCGAAAGCTCCCTAATCTCAAC ACGACAGCATTTTCAAGCCTTCCTGGCAACTGTGGGATCCGAATGCCCTACGGAATCAGCGTCGACATGAACTGTAACAA GTATAATACTATCTCCTTACCTTTAGGTTTTGTTTGGATATTCATAAATCTTCACTCATGCGCGCTCCAATTCTGCACAT TTAAACTTTTAGAGAAATAGGGAGACATGAGAGATAAATTAGATATAGAATCTAGGGCTGTCCCACAGTCAGATTCGGGC CCAAAATCCGGTTTCATTCGGGTGACGACAACCAAACCACCAGGACTGCCACCGTCCGTTCACTGGTGGCAGGTGGTTCA GGTTCGGTTCTTTTCGGTTGTCGGTTTGGACGGTCGTGTTCGGACGGGTTGTATATCTAAAAAATAAACGCAAAAAAAAG AACAAGAAGGTGGAAGAAATAGATCTGTAACAAATAAGGAAGATAAACAACAGATCTGTAACAAAATACATTGATTCTAT ATTAAAACCAATTTACAAACTAACAATGATCTAAAAAATCAAAATTTCACACTAGAAATGATGATGAAGGTGAAAAACAA CAGATTGGTGGTGAGAGAGCTTCCATGTCTTCATCGTCCTCAAGATCAAAGATTTGGTGGATGTGCATGTCATCCTCTTC TCCAAAAGTGAGAACGGGAACGACTGTGGTGGTGGCCGCGAGTGCGAGGACGGCGCGACTGTGATGGTGGCAGCAGAAGC GAGAACAGAGTGAGAGAACGAGGGTGGGAGAACAGAATGAGAGAACAGAGTGAGTGGCTAGGCTATGGTGGGTGCGGGTT TGGTGAGAGGTGGTGGCTGTAGATTGTGAAAGAGGTTGTGGTGGCTCTGGTTAGCTGTGGTGGAATATGGCTGTTAGGGT TTGATGAATGGTGAAAGAGGCTGAAGAGATTAGGTTAAAGATGTTAGTAGGTCTATTGATGTGTAGGGTTATTTGGGCTT GGGTTGGGTATTTTTTTTTAATTAGAGCTGGTTCGGTTGGTTCGGTCGGTCTAGAGCCTAAACCGGAACCGACTGGTCTG AATCACTCTAAACCGCTTTTTTCCAACCAAGCAAACCGCGATCCGAACCTGTTCAGCAAAAAAAATGACGGTTTTTACGG GTTCGGTCGGACCAGAATTTTGTGGACAGCCCTAACAGAATCGATGATATGACAGGATAATAATAGAGAAATGGAAAGCC AACCTCGAAATTCTGGGCTCCGCTTGCCCTACAGAATCAGCAATAACATGAAATGTGACAAGTGTAACACTATCTCCCTA CCTTTAAGTTTTGCTTGGATATCCATAAATCTTCGTTCACGTGTGCTCCAATTCTGCACACACCTATAAAGAAATCGAAA GACAGGAGAGAGAAATTAGATATAGAATCGATGATATGATAGAAAAATAATAAAAAAACAAAAAGCCTTCCTGACAATTG TGGGCTCTGCTTGCTCTGCAGAATCAACGACAACATGAAATGTGACAAGTATAACACTATCTATCCTTTTAAGTTTTGGT TAGATATCCATAAATCTTCATTCACGTGTGCTCCAATTCTACACGCACATATTGAGATAAATAGAAAGATATGAGAGAAA AATTAGACATATAATTGTTGACATGATTGGAAATTTATAGAGAAATAGAATGATAAAATTGATGAAATAGATAAAGAAGA AAATAAACTGTAAATAAATCGATACACAGTTTGGATACATGCAATGGAAAACAAAATGGAAGAGAATTAGATTAGAGCTT TTAAAAGAGTTTATTATAGCTTATCTTATAGTATATATAAGTGCTTATGCAAGTGTTGGAGAGAGTTTATGTAAATAGCT TATGATTTACCTATAAGTTATTTTGAGTTTATTTTCATAATTTATTCATATTAGTTTATGAATAAGAGTTTGAGTATCCA TAACTTATATTTAGCTTACTTCAATGAATTTCTCAGTTAATAAAAAAATACAACACTTATTACCATAAACACTTAAATTG ATTTTTTTTACCCAAACACTCCATGATAGATTATAGAGGAAAGAAACATTACTTAAATATTTTAATAATGGAGTATGATA AAAATAAAACTTCTATCCTAATACGCCCAAATTAGATAAAAGTGAAAGTACAAAATGGAATATTGGAATCAAGTGAAATT TAATGCATAAAATTTTATTTGGACCTGTCATATATATTTTTAAACAATTTAAATAAGTAAACATTTAATTATTTCATTTC ATTCCAACTTATTTCATTTCATTCTATTAATCCAAATGTCTTTTATGCATGATCTATTTTTTGGTTACATTTTATGCATG ATCTATTAACACCTTAAAATAGCATAAAAATCATTAATCCGATACCAAGTTGTAATATCATGTCACTTTCAAAAAAAAAA GTTGAAATATATATCATGTCGTATTTTTAATTCGGAGGGTTGGTTTATCCTCTCTTTATTAATTACCAATTAAAATGTAA ATTTTAAAATTCATTACATAATTTATTACACATAAGTTACCACTTATTGACCAATTATGGAAGACAAGCATTTACTCCTC CGTTCCATAAAGATTGTTGTGACATAAAGAGGAAAATGTCAATTATGGATAGTATCATGTTACTACACTTATTTAATTTT ATTAGTAACATGTACAACTATTAAATTCTACTTGGAAAGAGAATAATGTAGTTTCTTTTTTGAAATGAAAAGAGAATAAT GTAGTTGATAGAGAATAGTCGTGGTTGGTTAATATGAAAGGTGATAAGTGAGAGAAAATTTATTAAATGAGAGTATATGT GAAAAAAATTAGCAAAAGTTGCATTGGTTTTGTAGAAAAGAAAATATTTTGGAATATTAAAGGAAAGTTCAAAACAACAA TCTTTCCGGAACGGATAAAGTATTTAAGGAGGGGCATACAATAGATCTTCAAATGTAAATGATTTTATGCATACATCTAA TCGCACACCTCTACACTACAAAGTTCAAGAGAAATTGTGCAACAAAAGGTTCATAGGCTTGAAGGGCTTATGGGGGACTG ATGAAATTCTTTGCACAATAACAAATGTCTATGCTCCCTATGATGTTGAAGAGAAGATCTGATTATGGGAAGATATTATG AATTGGAAAGCGAGTAGTAACTGTCCATATTGGTGCCTACTAGGAGACTTTAATGCAGTGAGAACTCCAAATGAAAGAAG AGGAGCTGGGAATAATGCCACACAAAACAGAAGGGACACCGTTTGTTTCAATGATTTCATTGAAGCAGCTGAATTGCTAG ACATGCCTTTGTTGGGGAAGAAATTTACATGGTTTAGGCCTAACGGCCAAGCGATGAGTAGACTAGATCGCTTTCTTGTC TCTCACGATTGGATTTCCTTGTGGCCTGATGGAGTACAATAGGTCTTGAATCGAGAGATCTCCGATCATTATATTGTCCT CTTTTGTTTCGGCTTGCTAGACAAGATTGGGGGCCTCAACCTTTCTGTGTCCTCAATTGTTGGCTCCATGACACAAGATA CAAGCCTTTCATAGAAGATAGTTGGTTATCAATACTAGTCAATGGTAGGACAGCGTTTGTGATCAAGGAGAAGCTCAAAA ATCTGAAAGGGAAACTTCAGGATTGGAACAAGGAGGTTTTTGGCAATATAGTAACAAAAAGAAAGGCAATTGTGGAGGAG ATCAATGAACTAGAGAAGAAAGCAAAGGAGGTGACTCTCAATGACGATGATTTGAATAAAAAGAAAAAGTTAAGCGCTGA ATATTGGAGGCTTGCTAATCTAAATGAATCTTTTCTTTGTCAGAAAGCGAGGATTGGATGGATTAAAGAAGGTGATGCAA ATACAATTTTTTTTCATGGCATGGTGAATTAGAGAATGAGGAGGAATTCTTTACTTGGTCTCAACATTGACGGAAATTGG AATGAAAACCCAGCTAATATCAGGATGGAGACAAAGGAGTTCTTCTCTAAAATATTCAGGTAAGAAAGGTGGACCTCACC TACCTTGGAAGGAGTGCCCTTTCGACAAATTTCCTGAAATGATAATATGGTTTTGATAGCCCCATTCGAACCTGAGGAAA TAAAGGAACCTGAGGTAATAAAGGAAGCGGTGTGGGAGTGTGAGGGTGATAAGAGTCCGAGTCCTGATGGCTACAACTTC AGATTCATCAAGTCATTTTGGCATCTTCTCAATGAGGATTTTTTTAGGCTCTTAGAGGAATTCCATACTAGTGGTAAGTG GCCAAGGGGCACTAACTCATCTTTCCTAGCCCTAATCCCGAAGGTGGACTCTCTCATGGGGTTACAGGATTTTAGACCTA TCTCCTTGGTGGAGTGTATGTACAAGGTGGTATCTAAAATCCTCGCTAAACGGCTGAAGTGTGTCTTGCCAAAAATCATT GGTGAAACTCAATCAGCTTTCTAGGGAGGAAGAAACATGTTGTATAGTGTACTTGTTGCAAATGAGGTGGTTCATGATGC AAAGACAAGGAAAGCCCCAACTATGGCCTCCAAGGTTGACTATGAAAAGGCTTACGATTATGTTAAATGGGGTTTCCTCT TCTATATGCTTAATAGAATGAACTTTGATGCAAAGTGGATCCGATGGATCAATGGATGTCTTTTCTTCTCAACTATGTCG GTCCTAGTTAATGGTAGCCCTACATAGGAATTCAAAATGGAGAAAGGACTTAGACAAGGGGATCATGTAGCACATTTCCT TTTCCTCATTATAGCTGAAGGTTTAAATGGGATGCTCAAGAAAGTGGTGGAGATGGGCAAGTTCACTCCTTATTCCTTTG GGATGCCTAACTCATTTAGAGTTTCCTTGTTACAGTTTGCAGACGATGCACTATTCTTTGGAGAGGCATCTATTCAAAAT GTGGTCACTTTGAAGTGCATTCCTCGATGCTTTGAATTGGTGTCGGGTTTAAAGGTAAACTTTCTCAAGAGTAGATTAGT GGGGATTGCAATGGGTGAGGTTTTAGAAAGAAGGATGGCGGTCATACTTCATTGTAGAATTGCAAAACTCCCATTTGTGT ATCTTGGCTTACCTATAGGTGGCAATCCGAGGAGCCTTCATTTTTGGGACCCCGTGGTTTTGAAGATTCAGAAGCGTCTT TCGAGATGGAAGAGAAAGACTCTTTCTTTTGGGGGTAGGCTTTGCCTCCTTAAAAGTGTATTGACTGCTCTCCCTTTGTT CCATATCTCTTTCTTTAGAATGCCGGTGGGGATTGTTCATAAATGCGAGAATTTGATGAGGTCTTTGCTTTGGGGAGCGG TAGAAGGCGAGGAAAAGATAGCTTGGGTGAGATGGAGTATGGTGTGTAAACCTAAAGAAGAGGGGAGGATTGGAGGTGAA GAATTTGGGCCTCTTCAATAAAGCTCTTACGGGTAAATGGAGGTGGAGACTGTTAAAAGAAAAAGATAGCTTTTGGTGTG AGGTCTTAACTACTAAGTATAACAACTTGGTGCCTCCAAATGCATCAAAATGGTGAAAAGACCTTCACTTATTATGCTTT GAGGCTGGCAGTGGGGATTGGATTGATGTGGGTCTTAAACGAAAAATTAGGGAGGGAAATAAGGTGGATTTCTGGGGTGA AAATTGGTTGGGTTCAGGAACTTTGAAGGACAAGTTTGAAAGGCTCTTCAACATCTTTACTCAAAAGCACCATACAGTAC GAGACACGGGAACTTGGCTAAATGGCTCTTGGCAATGGATATTCATCTGGAGAAGAAGTTTGCTGGAGAGAGAACTCAAT ATGGTAGCTGAATTAATGAATACTGTGTCTGCTCATTCTCTAGCTGAAGGAACTTTAGATAATTGGATCTGGACAAAGGA AGAAGGGGGTTCATTCTCAGTTAAATTTGCTTATTTACTATTACATGGAAACATTGATGAACCTGGAGACAAGTGCTTCC GAAAATTGTGGGTTGTTAAAGCTCCTTCCAACGTGCTAGCATTGGCATGGAAAGTACTGATAAACGGGATTCAATCAAAG GAAAACCTCAAAAGAAGAGGTATTCTTCAAAACCCTTCTTAAACCTTGTGCTAATTTTGTTCCCAATTTGAGGAATCTAC TGCACATTTGTTCTTCACTTGCATCTATTCTTGGAGTGTTTGGAATCGGGTTCTTTGCTGGTTGGGAAACACCATGGTCA TGCAAGATGTAGGGAAACTTCATTTTCTTTCATTTCAGGAGGGCTGCAGTGTAAGGGATAGAAAGAGAGGGATGAGTCTT ATTTGGCTTTCAACCATTTGGTATCTATGGCACCTGAGAAACCGAGTAATATTTCAAGGTGCAAGGGCAGATTTTTCGAT GGCCTTGGATTCAATACAGCATAAATCTTGGCTCTGGTTTAAAGTAATAATTAAAGGTTTATGTTTCTCTCCCTTTGAAT GGGAATCAAACCCGTTAATATGCTTGGAGAGCCTTTAAGAGCCAAATTGGTGGACTTGGGGAAGCAATTAATGTATTTTT ATATTGTTACTATATTTGCTCCTAAGATGTAGATATGTTGTTGGGATCTAATTCAGGAATCTTATAAGTAGGAGTTTTTT CATCTCATGTAATGGCCCTTCTTTTGCCTTCCCCTGCGCCTATTTTGCCCTGTTTCTTTTCTTCTTTTCTTCTTCTTGTA CAAGGGTTGGAGCACCCCTTGTGCCCCTATTTATTATATACACATTAAATATTCAGATAAAAAAAACCTAGTTTAGGGTT TTAGGCCTTACGTTGTGTTTTGATATTTTTTTAAAGCTGAATTTTATATCATAAAAGAGAAAATATTACAAAGAAAAGAG CAGGGCATACCCAAGCTCGCATAAACAAACAGAAGAGAAACATAATACAAAGGGAAAGCAACAACAAACTAAGGGAAATC AAAAGAAACAACAACTAACAGAGAGAACCGCTAGAAAGAAACAGAACAAAGACATGAAAACAGGAAAGGCAATTAAAACA CATCAGCCAAGCTCGAGAGGAACACTTCAGTCAGTGTTTTGATATTTTTGTTATCGTAATATTTTAACGAATATTGAACT TGATTTGTTGTGTCCTATATAGATTATTAATCTCAAATTCACTTGTGTTGCAGCGTGTTCTAAACAACTCAAGGGCTAAG CTTCAACTAGTACGGATGAGTCGGTGTTTTCCAATAAACACATTGCTTTATTAATTTTTTGCTTGTCAAATTATATGATT AAATTTAATTTAAAGGGAAACAATGTGCCACTTCGATTTAAATTTCGTGCCCATTATTACATATCTAGTTTATCAATAAA GTATCCTTCCA
CDS sequence (LotjaGi1g1v0455500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCTAGCACATTCAATTGCTTGGCTCTCATAATTTGCATGGCGTTGGGCGCATCCATGTTAGCCACGGCTAACTT GACGTGCTGCAAGGTGAAACCTACTATGGACGCATGCAAGTGCTACGTGACCAGCGGTGGAAACGTAGTCCCTCAGAAGT GCTGCCTTGAGCTCATGAACCTGAAAAACAATGTGATGAATTCTGCCCTTCATCGCAGACAAGCTTGCCGGTGCATTGTT GATGCTGCTCGAAAGCTCCCTAATCTCAACACGACAGCATTTTCAAGCCTTCCTGGCAACTGTGGGATCCGAATGCCCTA CGGAATCAGCGTCGACATGAACTGTAACAACGTGTTCTAA
Protein sequence (LotjaGi1g1v0455500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMASTFNCLALIICMALGASMLATANLTCCKVKPTMDACKCYVTSGGNVVPQKCCLELMNLKNNVMNSALHRRQACRCIV DAARKLPNLNTTAFSSLPGNCGIRMPYGISVDMNCNNVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 6 | 116 | 111 | 1.6E-38 | – | |
| PANTHER | 6 | 116 | 111 | 1.6E-38 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 25 | 6 | - | – | |
| Phobius | 26 | 119 | 94 | - | – | |
| CDD | 27 | 116 | 90 | 2.83237E-18 | – | |
| Gene3D | 27 | 119 | 93 | 2.2E-20 | – | |
| SUPERFAMILY | 27 | 118 | 92 | 1.4E-13 | ||
| PRINTS | 28 | 44 | 17 | 1.3E-11 | ||
| Pfam | 35 | 115 | 81 | 2.0E-4 | ||
| PRINTS | 71 | 86 | 16 | 1.3E-11 | ||
| PRINTS | 88 | 105 | 18 | 1.3E-11 | ||
| ProSitePatterns | 97 | 118 | 22 | - | ||
| PRINTS | 106 | 117 | 12 | 1.3E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi1g1v0455500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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