Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0455600 |
Transcript ID | LotjaGi1g1v0455600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Non-specific lipid-transfer protein; TAIR: AT5G01870.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q43129|NLTP2_GOSHI Non-specific lipid-transfer protein; TrEMBL-Plants: tr|I3SCH8|I3SCH8_MEDTR Non-specific lipid-transfer protein; Found in the gene: LotjaGi1g1v0455600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95864774..95867628) extracted from Lotus japonicus Gifu genome v1.2.
GAACGAACCAATTTGAATCCTCTGTATTTTCTATATATAGTCCTTACAGTCACCACAACTAAATCATCATCACCTCCACA CTCATTCACCCTTCAAGTGCAATTTGCTCTTCCAAATCATGGCTGCCGCACTGGTTCTCAAGTTTGCCTCCTTGGCCGTG ATGGTCATGGTTTTGGGCTCTCCTTTCGCCGATGCGGCTCTGCCATGTGGCCAACTTACGTTTACTGTTGCACCATGCAT TGGCTACCTGAGGAACCCTACTCCAACTGTCCCTGCAGCATGCTGCAATGGGATAAGGGACATTCTTAGGCAAGCCAAGA CCGTCCCTGATCGTCAAGGGGTTTGTAGGTGCCTCAAATCCACTGTTTATAACTTGCCAGGAATCAATCTTCCAGCTCTT GCCTCTGTCCCTGGCAAGTGTGGAGCCAAATTGTCCTACAAGATAAGCCCCTCCATTGACTGCAACACGTAAGATATAGA TATCATTAATCATGAAAACCCTCTCTTTAATTTGTTAGGATCTGAAATCTTTAGTTTCCATTTACCCTCTCATTTCCTGT CTCACTAATCTTTAGTTCAAAAATTAGATTAATCAAAATACTTTTTCGATCATCTCTCTCATAATAAGCTCCCACTATTT CATAAGATAAAATGACTCATCCAAGAGATATAACCCCCCAAAAGCAAACCACCACATTAAATCAAAAATAGCTCTCGTGA AATTTGGTAATTTTCATAGCAACCACCATAACAAGCTAATAATTAATGAGACCCCAAGGTGTAAGAGCATCTTTAACCAT GATACTTACTAAAGTATTTACATTCTACTTTTTTACAACTTCTAATAATGTCACATCATCTACATCTTTTTATTAATTTT TACTCCAATCCAATAACTCTTAAAAGTTTATATAAAAAATTATTTTATTAATTGCAAGTTTTATTTAAACCTTTTACATT AAGCAATACTAAATCCAAACACATTTTTCATGACTAGATTGAGTATCTACACTCACATACTCTCACTAGTCATGTTGGAG TTAAAAATATGCTCCAATGATAATAGATATTGGTGAGAGTATGTATTTGACATTACATACTCCTATTGGAGATGCTCTAA GATTATAACTTATAACTATCATATATATCCATTTTTTCTAATTGACAGTACCAAGATTTTATATGTGATCGAGATATATA TGCAATAAAACATCGAATGGATTTTAATATTCTGATTAGCAATAGTAAAATCTTGTCATGTCAACTAAAAATGTTATGTC AGTATTTTATTAATGAAATCATTGTTTTAAAACATAATGGAATTTCAATGCATGCTAAATATATATATATATATATATAT ATATATATATATATATATATCTAACATTAAGTTGTAATTGCAGGGTAAACTGAGCAGCTGGAATTGCACGAGGGTATTTA CCCTTGTTGAGTCAGTACTTGTGTTATGGCAATAACTAGCAAAGAGAGAATAAAGAGATGGTGTAATCTCCCCATGAGTT GTCACGATCCTCGCTAAGCGATTGAACTTTATATGATTATGTTGTATTTCGATAATAATTATATAATAAAATCTCATATC TACGTGTAAGGGATACTTGAGTTTTTACGATATTTGGCTTATAAAAAAGGCAAACTTTTACATGTTAGTTGGTGAGAGGG GGTTATAATGTTGTTTCTCTTATACCCAATCAGTGAATGCCAAGTGTGGAAATGTGTCATGTCATTTTAACTTATAAAGT TGTTAAATTGATCCTCTAAATATCTCTATTATAAGTTTTACTATGTGTTTAAAATACATTTTTTTTAGAAAATGTTTACT TTCTGATTTTCAAATTGATTTTAACCTTAGTTGATTTTAAACATTTCAAGTTGATTTGGGGCAAATATTAATCTAATCCT TCCTCCTCTCCTCTGTGTTCATCTTCGTCTGTGATGTCGTTCTCTTCCTCTCCCATCCTCCATGAGTGAAACTGTATAGC AGAGGTGATCATAAATTCCCACATGTGCCTAACATGTTTCGTGTGAATTGTTATCAGAAAACATTGGCCAGACTGAATTG TTGAACAACCAATTGAATGGAAACCAAGAATGAAAATATCAATTTAAACCCAGAATATCAATTCATGTATCTCAAAGTAG AAATTTCATAGAGATCTGAATAATTTTAAAACCCCAAAAGGGGTTTGCTGCGGAAGTGCTTCTTATCAGATAAAAAAGGC TTGTGGCGGAGTAAGGTTCAAATGGTTTATGCAAACGATGAAGGACGAAAAAAGAATTGGGGTCTACAGCGACGACAGAG TGTACTCTCGAAGTGAACCAGATAACGATGCCCATGAACTACGGTTAGAAACAGCGCTGGCACGATTATGAACGACGGCG GCTGAAACCACAGGGACGGCTGAAGAAAGGAAGAAGATGAAGATCTAGGTAGTTTCAGGAGAAAGGGATTTTTAGGTTGA TGCAGCAGCAGAAAGATTTTTCTTCAATTTTATTAAATTGGAAATAGTTTAGGGAGTAAAATGTAGAACTTTAGAAGTCT AGGGAGTACAATTTGAAACTTAAAACAAAGACATGACATGACATTAAAAGTACACTAAGCATCATCTTATTGGCTACTTG TGGGGGGCATGACTGCTGTTTAAAACACAACCAACATTTTAAAGTTTGACTATAAAAAATTGTGTTTTTACATTAAATGC ATTAAATTATAACCCCACATACCTTATTTTTATTTATTTAAATTATAATAATTTGTATATAGTGTTAAAAAAATATTATA AGTGCTCGCGCAACACACATGTATTATATAGTGATTTAGGTATTGAGAGTGAGAG
CDS sequence (LotjaGi1g1v0455600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCGCACTGGTTCTCAAGTTTGCCTCCTTGGCCGTGATGGTCATGGTTTTGGGCTCTCCTTTCGCCGATGCGGC TCTGCCATGTGGCCAACTTACGTTTACTGTTGCACCATGCATTGGCTACCTGAGGAACCCTACTCCAACTGTCCCTGCAG CATGCTGCAATGGGATAAGGGACATTCTTAGGCAAGCCAAGACCGTCCCTGATCGTCAAGGGGTTTGTAGGTGCCTCAAA TCCACTGTTTATAACTTGCCAGGAATCAATCTTCCAGCTCTTGCCTCTGTCCCTGGCAAGTGTGGAGCCAAATTGTCCTA CAAGATAAGCCCCTCCATTGACTGCAACACGGTAAACTGA
Protein sequence (LotjaGi1g1v0455600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAALVLKFASLAVMVMVLGSPFADAALPCGQLTFTVAPCIGYLRNPTPTVPAACCNGIRDILRQAKTVPDRQGVCRCLK STVYNLPGINLPALASVPGKCGAKLSYKISPSIDCNTVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
Phobius | 1 | 26 | 26 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
PANTHER | 1 | 118 | 118 | 1.1E-41 | – | |
PANTHER | 1 | 118 | 118 | 1.1E-41 | – | |
Phobius | 1 | 2 | 2 | - | – | |
SignalP_EUK | 1 | 26 | 26 | - | – | |
Phobius | 3 | 14 | 12 | - | – | |
Phobius | 15 | 26 | 12 | - | – | |
Phobius | 27 | 119 | 93 | - | – | |
Gene3D | 27 | 119 | 93 | 9.8E-28 | – | |
SUPERFAMILY | 28 | 118 | 91 | 8.32E-24 | ||
CDD | 28 | 116 | 89 | 6.99734E-34 | – | |
PRINTS | 29 | 45 | 17 | 3.5E-23 | ||
SMART | 30 | 115 | 86 | 6.3E-10 | ||
Pfam | 30 | 115 | 86 | 3.5E-7 | ||
PRINTS | 50 | 64 | 15 | 3.5E-23 | ||
PRINTS | 71 | 86 | 16 | 3.5E-23 | ||
PRINTS | 88 | 105 | 18 | 3.5E-23 | ||
PRINTS | 106 | 117 | 12 | 3.5E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi1g1v0455600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…