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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0455700 |
| Transcript ID | LotjaGi1g1v0455700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-specific lipid-transfer protein; TAIR: AT5G01870.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9M5X8|NLTP_PRUAV Non-specific lipid-transfer protein; TrEMBL-Plants: tr|I3SCH8|I3SCH8_MEDTR Non-specific lipid-transfer protein; Found in the gene: LotjaGi1g1v0455700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95884115..95887145) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTATTAGATATCTTTCTCTTTTAATTTACTTCCATCAATATTTAAGGATGGAGGTGGAATGAGGTGTTCCTTCAATT TGAATTTGATGCCTCCGTTGATGGCAATACAGTGGCGGGGCACGGGGTGGTGGCGCGCGACAAGGATGCTGAAGTGTTGG CACTTGTGGTGTTGCATTCTGTGAAGGTTCTCTCTCTCGTGGTGGCCGAAGCTTTAGCATTCCGGTGGTCTTTGATCTTA ACTTCTCGGTTAGGGTTCCGGCGGGTGTGTTTTGAGACCGATTGCCTTCAAGTATTCTAATGCTAGAAGAAACCACCCGA TGGAAATTATTATTTAGTTTCTATTTTCAGAGAGTGTCGTTTATTTGCGAGTTCTTTTGATGTTGCTTCTTTGTCTTTTG TTCATAGGAGTGACAACTCAGTTGCAGACTATTTAGCTTGGAATGCTTCCTTCTTCTCTAATTTAGTTTGGGTTGAAGCC TTCTGGTGCTTTACCCGTTATAATTTCGGATGCTAGGGCAATATGATGCGATCCAATTTAAGAAAAAAAAAATTGAATTG TTCCCATCAAGTGATATATATATCTAAACAACTTCATGTTGTAGCCTCGTGGTTTCGGTGAGGGTCACTAGCATGCATTA AACTAAATAAATTGATAATTTCCTTCCATTCCCTTTTTCTCCTTTAATTTAATTAACGAACAAACTTGAATAATATCCGT ATTCTTATTTTCTATATATAGTCCTCCACTGGCAACACAACGAAATCATCACCTCACCTCCAAACTCACATTTATACACT CACCATTCAACTGCAATTTCCTCTTCTAAATCATGGCTACCACACTGGTTCTCAAGTTTGCCTCCTTGGTCGTGATGTGC ATGGTTTTGGGCTCTCCTTTCGCCGAAGCGGCTCTGCCATGTGGCCAGGTACAATTTACTGTTGCACCATGCATTGGCTA CCTGAGGAGCCCTGGTCCATCTGTCCCTGCACCATGCTGCAACGGGATCAGGACTCTTAAGAACCAGGCCAAGACCATCG CTGATCGTCAAGGGGCTTGTAGGTGCCTCAAATCCACTTCTCTGAGCTTGCCAGGACTCAATCTTCCAGCCCTTGCCTCT CTCCCTGGCAAGTGTGGGGTCAACTTTTCCTATAAGATAACCCCCTCCATTAATTGCAACACGTATGATATACTCCTTTT CAATAAACATGAGTACCCTTAATTTCTTTGTTTGGATTGAGATCTTTCATTTTTCATTTGGTGTCTCATTACCGTCGTCT CACTAAGTACATTGTGACTGCAAAAATTAGATTAATCAAGATATTTCTGAGAAGATCTCTCTCGGATATATAAAATTAAG ATAGAGACACTAGACCATATTTTATGTTTTGGTAGCACTAATTTATGCAAAAGGCGAAAAGCGCCGCCTAAAATGCATCA GAAATCAATTCGTCAATGTTGCTATAAAGAGTTCGTTTTAGGCAACACAATTTTTCGCAACACTAAATAAATGTCCCTTG TTTTATAATAGAGATCAAAGATCAATTATTACGTGATAATTATTGTTTATTCCATACAATAGGTTACCGTTTTTCACAGT GTTGCCATTATGTAAGAAAAATTGTCTCCAAAGGAATAGGTAACGGTAAAACATGAAACCATAAAAAAAATTTGCGTAAG TTTAGGAAACATTTTTCATATTTATGACTACGCTTTTGAACGGTTACTGAAAACAAAATATGTTGTGGTGATATTATGGT TGATAATTTGATATAGAAGAATGTTTGAAAACGCTAATTTTATGGCTGACTAGCAGAAATTGTTGTACTAAAATGTGTTA AATGTTAATCATAGTTTGTGCTAATTCCGGGGCAGATTTTGGAAAGAAAAAAATATTTTACAGCGGAGACATCTAAATCG GTTCAAAATTGCTATATAATACTAAAAAAGCCCTGCAATGAAAGCCATGCCATTTTTATGTGTAGTGGTCATAATGAACT TCGAATGCATGATATATTTATAAATCTAACATCAAGCTTGAATTTGCAGGGTAAACTGAGCCGCTGGAATTGCATGAGGG TATTTAGTTATCCTTGTTGAGTCTTGTGTAATAGCAATAATTAAGCAAAGAGAGAATAAAGAAGATGGTTAATCATATTG TATTTCGATCATAATTATATAATAAAAATCTCATATACTATGTCTATGTCTCTCTCGATTCGATTGTTGATTGTCTCCTT TGACGTCACTGGATTTCCCTATAATGTACTCATTAATAAAATTGAGTAATGCAAGCTAGTTCCTCAAATAAGTTTATGGT ATTATATGTATTCATGTTTTTGTAAACCAACAGGATTCTGGAGTTGTGATTACACTTTTCAAAACCGATTAAAATAAGTG ATTCTAAGACAAATAATCAGAATTAAATGGGGAACCCTATAAAACAAACAAAATCATACACAACAAAGATTAATGAAAAA CTTGGCTAAACAAGTTTGTAGATCAAATATTGAGCACGATCGGTGATGACTCTCAAATTAAATGAATTTGGCGATCTAAA AGTTGAGCTGGCTCTAGCTTATCCAATAAAAACCACAAGCATGACATCAAAGCACAGTTGGACAGATGTTAGCGGCCGAT ATGGATGCCAAAAATACCCGTAGCCGCGGATAGATATCCATCACGGGTAGAAGTATATAACTGCAGGTTGGGGTACAAGC AGGCATGGAGGGTATTTGGTGCCCGCAGGCAAGGACGGAACCAAGGCTGTTTAAAAGGGGTGACCGCCCCCCATTAGTCA AAAAAATTATGTTATGTACTACATATATATAATGTCTCTGCCTCCTATGCTAGAAAAGGTTATACTATAAGTGGAAGCTT TGTGCACCACTTTGTGCCTTGTGTTACGGAAGTTTCCACATGAATGAAAGTGTAATTAATTAGCCTCAGTGTAATATTCA CAGACACAAGTCACATTTTTGTCCACAAGTTAAAAAGCTTTTCAAAAGACAAGATTATTCTTTTATTTTAC
CDS sequence (LotjaGi1g1v0455700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCACACTGGTTCTCAAGTTTGCCTCCTTGGTCGTGATGTGCATGGTTTTGGGCTCTCCTTTCGCCGAAGCGGC TCTGCCATGTGGCCAGGTACAATTTACTGTTGCACCATGCATTGGCTACCTGAGGAGCCCTGGTCCATCTGTCCCTGCAC CATGCTGCAACGGGATCAGGACTCTTAAGAACCAGGCCAAGACCATCGCTGATCGTCAAGGGGCTTGTAGGTGCCTCAAA TCCACTTCTCTGAGCTTGCCAGGACTCAATCTTCCAGCCCTTGCCTCTCTCCCTGGCAAGTGTGGGGTCAACTTTTCCTA TAAGATAACCCCCTCCATTAATTGCAACACGGTAAACTGA
Protein sequence (LotjaGi1g1v0455700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTLVLKFASLVVMCMVLGSPFAEAALPCGQVQFTVAPCIGYLRSPGPSVPAPCCNGIRTLKNQAKTIADRQGACRCLK STSLSLPGLNLPALASLPGKCGVNFSYKITPSINCNTVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 118 | 118 | 4.1E-43 | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| PANTHER | 1 | 118 | 118 | 4.1E-43 | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| Phobius | 15 | 26 | 12 | - | – | |
| Phobius | 27 | 119 | 93 | - | – | |
| Gene3D | 27 | 119 | 93 | 6.3E-31 | – | |
| SUPERFAMILY | 28 | 118 | 91 | 1.38E-24 | ||
| CDD | 28 | 116 | 89 | 2.52103E-36 | – | |
| PRINTS | 29 | 45 | 17 | 3.0E-25 | ||
| Pfam | 30 | 107 | 78 | 6.5E-8 | ||
| SMART | 30 | 115 | 86 | 5.8E-13 | ||
| PRINTS | 50 | 64 | 15 | 3.0E-25 | ||
| PRINTS | 71 | 86 | 16 | 3.0E-25 | ||
| PRINTS | 88 | 105 | 18 | 3.0E-25 | ||
| PRINTS | 106 | 117 | 12 | 3.0E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi1g1v0455700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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