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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0457200 |
| Transcript ID | LotjaGi1g1v0457200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-green plastid inner envelope membrane protein; TAIR: AT2G38550.1 Transmembrane proteins 14C; Swiss-Prot: sp|Q9ZVH7|FAX3_ARATH Protein FATTY ACID EXPORT 3, chloroplastic; TrEMBL-Plants: tr|K7MTU1|K7MTU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0457200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96055038..96059714) extracted from Lotus japonicus Gifu genome v1.2.
CTTCAATCACCACCACACCAAACATGTGAGTAAAAAATTCCAAACTTGTCTGTGTTGCCAAACAACCTGCAATTTCATTT CTTCATAAACCCTTTTGCCCTCTTTCATTCCCTTCTCTTCAATTCACACTCCTTCCTTCACCAACCTCTCGTTATCTTCG CCTCCATTCAACTTCAATCTCTCTCTCTCTCTCTCTGGTCATTTGGACCAAAGAGCTATGATGAGTCTATCAATGGATTC AGTTTCGGTGTTAAACCCTAAAATCTCAAATACCCATTTCTCAGTTCCATCCAACAAGCTACCCCATTGCGTCAAGTTCA ATCCTTTGCTCAAACCTCGCACCTTCAGATTCTCTGCTAACGCTGCTGTTCCAGCGAAGGGGCTTGCCGCATGCTTTCTT GCCCCTAATCGACGGAACCCGTTCATGGTCCGGTTTGCAGCTTCCTCATCGGTAAGATGAAAAAGGAACCATCTTTGTTC TTTTCTTGAAATGGGGTGGTGAGGTTTGAACTCGAAATGCCATTGCTCAATTAGAGCAATTTTGGTATAAGTAGTGTCTG TTGGCTTTATCAAATGAAAAGCTCAAAGGAATTTTTGGTGTTTAGAAGAATTTGTGTTCTTGTTTATGTATGATTTTAGG AATTTGAAATTTTAAGATAATGTTGATATGTTGATTATACTGTTATCTTCACTTAATTAGTTAATATAAGAAAATTATAT CGGAATAGAGGATATGTTAGGAAATTAAGCAATGATTTTAACAGAAAAGTGCTGTTGATGTGGTCACAAATTCAGGGTTT TAAATTGCCGCTGCAGTTGACGGTTATGTTGCCGAAGCACAATTGCAGTAGCGATGCCGTTGCAGGGACTCAGCTGCAGA CTGCAATTTAAAACCGTGTTCACAATTGTGGTTGTGTTGAGCTTCAAAACCTTGACACTGCAATTGTGGACTTCGGCCAT TTTTAGAACCTTTCATGTTCTCATGCAAGAATTATTCTCTCAATCAATTCGTTGAAATTTCAGTATTCTGCGTCTAAAAG TTAGCTAGCTCGTTAGTTTTATCCAATATTCTTGAATTGCTAATCTAGATCGGTAAATGTATAGGAGCAGGGTGAATTTG AAGTGAAGGGGAGTGATGAGAAGCCTCCCAATGATGTTGCTTCTGAAGAGTCACAGGAAGCGTGGAAGCAGGCTCTGGAT ACCTTCACAGAACAGGCCGTGAAGCTTAAAGGAATTTCTGAAGAAGCATATGAATTATATTCTAAGAAGGCCATTGTCGT TTTGAAAGATACCTCGGAACAGTTGAAGATACAAGCAGAACAGGCAAAGCATGATTTGAGTGTGGCGGCAAAGGAAATTG CAGAGGGAGGGAAAGTGTATTTGTCTGCGGCTTCCGAGAATTCACCTGAGGTAAAGGATATTGTGGAGACATTTACATCC CCAACTGATGATCTCAGCAACATTTCTGGAGTTCAGGACTTCTATGTTGGTGTACCTTATGGTATGTAAATATCCATGTT GTTTGGTAAAGTTTTGATTGGGATTTTTTTTATCTGAATAATATTCCTGGCAGATTCTGTTTACTAACTTAATGCAATAA CTGTTAAAAGGCATTTGAATGTAAGGTGTTCCTGATTCCCTGATATAAATGTTCTTGGATACAGTCTTGTGGTGGGGAGC TTGTTGCAAATAGAAAGGAAAAGGGCTTCGATTGTCATATTAGCATGTGTCTAACTCAAGGAGAGGGAATTAGTTAGTAT GTATTGTTTCTTCATACTTTAGGGGATAAGTCCCTTTATACCTTAGGGGTTGAGTAGGATAAATGACTAAGGCTATATTT GGATATCCGTTGGCAGCAGTGCAAACGTACATTAAAACTCACTTCGAGACAAAATGAACGGGACTCTTCTTATAGATTAG GAGGAAAGCCCGTTCACGTTCACCCAACTTGTGTTCACGTTCACCCAACTTGTATCCAAAGTCCAAACACATACTAAGTA ATCTTCACTTGTAGGAAGGTAGTGGCACCTGATGAGGATCAGGATTGGTACCTGATGGATGACCCTTACAGGACATAAAG TTATATGGATAAGGATTGATATTGACGACTGTTATCTAATAGAGGTAGTTTTTCTATATGTTGGGCTGATGTTATAGGGC CAGCTCATTGCGCCTCAATATCAGTACTGTACAAATGTCATCTCATTTGATGGTTTAAGACCCATCTAAAATTAAATGAT ATGATTTTATCATGCTGACTGGGAAAAATTTTAGCCTCTTTTTTCCTCCCAAATTCATAGTTTAATTTGTGATACTTCTA ATTTTTGCAGGTTTGGTACTATCTCTTGGTGGCTTCCTTTCGTTTATGGTAACAGGAAGCGTTGCAGCCATAAGGTTTGG GGTGATTTTAGGTGGTGTCCTCTTGGCTTTAAGCATTTCAAGTCTGAAGTCGTATAAAAGAGGAAAACCTTCTCCTCTAG CTTTGAAGGGCCAAACAGGTAAAGATCATATGCTTTGTATGTAAAAGAATGCTCCATCTAAAAGAATCACAAAAAGTAAA TGGGTAATAAGAATCTGAAAGTTAAATATATCTCACTAAGTTTTGCAATAGTATCATGCCAAGGTTATCAAAAGTGAAAT CTTACCTAGGATTGCAATGAAACTTAGGGTGGTTGATAGCATTAAGCTGGTAGCATTGTGCGATCCTATGTGTTTAGCAA TGATTTTGAAAACAATGCATCATGTGATTACTTACCATTGGTTTAATTGTAATTCGTTCAATCGGTTTTCGAATGTAACA AAATTTCAGCATGAATTCATATCCTGTAGAAGGGGGGGGGGGGGGGGTTTACAATTTTCTGTAGAAATAAGAACTGCAAG TTCCAATTGACTTAATTATGTTGGGGAATTCCCACTTTCTTTTACTTATTTGAATTTTCTAGTCTTCCGGTATGGGTTGG AAACAACAATTAGCCTTAGCCTTCCTAAACATTCATATTAATGCTGACTTGCACATGTTTAACTTTGCCTTATTTAGGGT TTAAATCACGTTTTGCTGAATGATTGATGCCTTCTATGGTTCTACCTGCTTTGATTTGTTTTTATTCACAAAATTTTGAA TACTAGACAAGTTGTAGTAAAATTCATCGTAAGTAATTACACGCTAGTGATACTTACGATGTACTTTTCATGTTTTCCAT ATAATGATGCAATAATGTTTATTGGTTTGCTTATTGATCATGAATCTTATTTTAAATTACCTGTTGTCCTTGCAGCTATA GCAGCTATATTGTTTCTGCGGGAGCTAGCCTCAATAGGCAAAGTAAGGGATTGTTTGTATGAATATTTGTCGAAACTAAT CTAACTTTAATGCTGATAACACTTATTTTAGTTTCAAACTTTTGATAGTTTCTTGTTCCTTGCTTTTTTCCAGGGATCAT CTTATTTCACCGCCTTGATCAGGTTCTTGAAACTTCGTTATTATTTTTAACTTACATATGAACTTATTGTTTGCACTAGC CTATTCATTTTCCTGCCCTAGCCTTTACTGTTAATCTCAAATTCTCAATCACTTGCTGCTGTGTCATGTTTAGCACAAAC AGGGTTGAATTAGAATTAGATTATATTAATATTGTGAATGGTGATGTCCTGAAAATAGAATTTCATTTAGTACCATTCTT TGGTCCAATGCTTTTATCATTCGTATCAATATTGTGTTACGTAACAATTCTTTGATCATTCAATATTTTGTTATGTAACA ATGCTTTTATCATTCATATCAATATTTTGTTATGTAACAACTTTGTTTAACATCTGCAGTGGTGCGGCAGTGGCATTTTA TGTCTATAGAATTGTACTGGAACGCAACCAACAGAAGGGCTCAAACTTGGAAGGTGAAGCAGAAAGCTAGTTGAGTCATG AGTGATAAGGTTAGTCTATTAAAGTTTATAGATACTATATATTTGATCTAAAAAAAGTTTAGGTGAGGTAGTCTTTTCAA TGTGAACTTTTTTGCCAGCATCAGTGTTATTGTCTTCCATTTGCTACTCTGTTAAAAATTGAAGATCAGATTAATAAACT TAAGATCAACATGAAGATGGTCGGCGTAAATTTTGATGATTATTTTATGATATTCACAGGCTGGGTCATGAAGATTAACT ATCGCTGCTGATGGTTACAGTTTCATGCATGGAAAAATTGAGCATGGAAAATCTTGATATAATTTCACGTATACTTTCAT GTATAAATGTGATTTCTCTGGAAAATAACTAAATAGCATATTATGAATGACCTTGCTTTGAGGTGGATGTTATGAATTGA TTTTGTTTGTATGCTTAGGATTTAAGTTTTAGGGTTTAGGAAGCTAGACTTTGGATCTCAGTGTGTTAGAATCTATCTTG ATACGGTGGATTGATTATTCTCCAAAACTTGCACCAGAAAACATAATAAATACCAGTTTCTTTCATTCTTCAACTCTATT TAATTTGGTGTTTGGCTAAGAGCATTACTAAATCAAGATTCATATCCTTTTTCCCAGGATGATTAACAAATCAAAAGCCT GGGACTATGAACAAAAGAAATATATTTTTTCGTCAAATAACGAACAGTATTAAAATGTTCTATTTTAGTTTTAAAAACGG AACCACGTGTAATCAGATTATCTGGGAATGGTAGGTG
CDS sequence (LotjaGi1g1v0457200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGTCTATCAATGGATTCAGTTTCGGTGTTAAACCCTAAAATCTCAAATACCCATTTCTCAGTTCCATCCAACAA GCTACCCCATTGCGTCAAGTTCAATCCTTTGCTCAAACCTCGCACCTTCAGATTCTCTGCTAACGCTGCTGTTCCAGCGA AGGGGCTTGCCGCATGCTTTCTTGCCCCTAATCGACGGAACCCGTTCATGGTCCGGTTTGCAGCTTCCTCATCGGAGCAG GGTGAATTTGAAGTGAAGGGGAGTGATGAGAAGCCTCCCAATGATGTTGCTTCTGAAGAGTCACAGGAAGCGTGGAAGCA GGCTCTGGATACCTTCACAGAACAGGCCGTGAAGCTTAAAGGAATTTCTGAAGAAGCATATGAATTATATTCTAAGAAGG CCATTGTCGTTTTGAAAGATACCTCGGAACAGTTGAAGATACAAGCAGAACAGGCAAAGCATGATTTGAGTGTGGCGGCA AAGGAAATTGCAGAGGGAGGGAAAGTGTATTTGTCTGCGGCTTCCGAGAATTCACCTGAGGTAAAGGATATTGTGGAGAC ATTTACATCCCCAACTGATGATCTCAGCAACATTTCTGGAGTTCAGGACTTCTATGTTGGTGTACCTTATGGTTTGGTAC TATCTCTTGGTGGCTTCCTTTCGTTTATGGTAACAGGAAGCGTTGCAGCCATAAGGTTTGGGGTGATTTTAGGTGGTGTC CTCTTGGCTTTAAGCATTTCAAGTCTGAAGTCGTATAAAAGAGGAAAACCTTCTCCTCTAGCTTTGAAGGGCCAAACAGC TATAGCAGCTATATTGTTTCTGCGGGAGCTAGCCTCAATAGGCAAAGGATCATCTTATTTCACCGCCTTGATCAGTGGTG CGGCAGTGGCATTTTATGTCTATAGAATTGTACTGGAACGCAACCAACAGAAGGGCTCAAACTTGGAAGGTGAAGCAGAA AGCTAG
Protein sequence (LotjaGi1g1v0457200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSLSMDSVSVLNPKISNTHFSVPSNKLPHCVKFNPLLKPRTFRFSANAAVPAKGLAACFLAPNRRNPFMVRFAASSSEQ GEFEVKGSDEKPPNDVASEESQEAWKQALDTFTEQAVKLKGISEEAYELYSKKAIVVLKDTSEQLKIQAEQAKHDLSVAA KEIAEGGKVYLSAASENSPEVKDIVETFTSPTDDLSNISGVQDFYVGVPYGLVLSLGGFLSFMVTGSVAAIRFGVILGGV LLALSISSLKSYKRGKPSPLALKGQTAIAAILFLRELASIGKGSSYFTALISGAAVAFYVYRIVLERNQQKGSNLEGEAE S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 203 | 203 | - | – | |
| PANTHER | 40 | 316 | 277 | 8.5E-107 | ||
| PANTHER | 40 | 316 | 277 | 8.5E-107 | – | |
| Coils | 135 | 162 | 28 | - | – | |
| Phobius | 204 | 224 | 21 | - | – | |
| Pfam | 206 | 299 | 94 | 1.6E-8 | ||
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 225 | 229 | 5 | - | – | |
| Phobius | 230 | 249 | 20 | - | – | |
| Phobius | 250 | 260 | 11 | - | – | |
| Phobius | 261 | 280 | 20 | - | – | |
| Phobius | 281 | 285 | 5 | - | – | |
| TMHMM | 283 | 305 | 23 | - | – | |
| Phobius | 286 | 305 | 20 | - | – | |
| Phobius | 306 | 321 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0457200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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