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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0458300 |
Transcript ID | LotjaGi1g1v0458300.4 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Mannan endo-1,4-beta-mannosidase; TAIR: AT5G01930.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9LZV3|MAN6_ARATH Mannan endo-1,4-beta-mannosidase 6; TrEMBL-Plants: tr|A0A072U0R9|A0A072U0R9_MEDTR Mannan endo-1,4-beta-mannosidase; Found in the gene: LotjaGi1g1v0458300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96169532..96172418) extracted from Lotus japonicus Gifu genome v1.2.
AATGTTATATGTTACGAATGAAAGTTGCAAGAAATGCTGATATGACACAACTCACACAAGTACACAACTAACTTCATTAT TTGACAGAAATCATTGGAGTAGTGAGAGATAATTACTACCATATCTTATGTTTCGTATAGTAAAATTTAGTATATCCCAT CATCTTATGTTGGTCAATCCATGTGCTTGTTTCTTTAACCATGATAGTTGAACTTTTTTACTTTTTGCTTTCTTACTAAA GGAGTGAAATGAGGGATATGGAAGAAGATGAATGGCAGATGGTGCAGAAGAAAGGAAGCCAATTTGTGGTAAATGACCAA CCTTTCTACATCAATGGATTCAACACCTACTGGCTGATGGTGTTTGCTGCAGATGAGTCAACCAGAGGAAAGGTCACTGA AGTGTTCAAACAAGCATCCTCAGTGGGCATGACAGTTTGCAGGACTTGGGCCTTCAATGATGGCCAGTGGCGCGCCCTGC AGAAATCCCCATCAGTTTATGATGAAGAAGTCTTCAAGGTGCTCCTTAATTCTTTTGGTATTTTATGTACTCCCACACTT GCTTAGTCTAATGAACTTTTTGCTACTTCTGATTGAAGCATTACGGAGAGGGTTAGACACCAATCTCATGAATTGTTTGC TTGTGTAAGCTTACATGGTGATTAGAATTAGATTATGATACAATCAAATGGTGCTTGTTTGGAAATCATTCTATCATTGG TTCTGAAACCAGAATCAACTCTGAGGAGAAGCTTACGTGAGTAGCTTCTGAGTTTCATATTGATTCTGAGGTAACAGAAG CTGATCTAAACATGCTGAGCTATTATCAGTGTAGCTAATTATCATTCCTCTCCGCAGGCCCTGGATTTTGTGGTGAGTGA AGCAAAGAAGTACAAAATCAGGTTAATATTGTCATTGGTTAACAACTGGGAAGCATATGGTGGCAAAGCACAATATGTGA AATGGGGCAAAGATGCTGGTCTAGACTTGACTTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAACTACTACAAG GCCCATGTTAAGGCAAGTTTATTTTCTTAGAGTTTCAGTTGGTTTGTTAACATGTTGTTTAGTTAGTTAGTTTGGTTATG TTAATTTGAGTTGGTTATGATGATATTGGTGTGTCTGATTGTAGTATAAATTGGTACTTGCATCTTCTTTTCATAAATAT GGAACCTCCTTGGTTTCCTCTCTCACTTGAAATTCTCTCTTCCTCCCTCTCTCTCTTTCTCAATCTCCCCATTTTACTCA AACATTTAAATATAACAAGAGGACCAAACCACCATGGGTTATTTTGATTTGGACACTGGAGTTAAGCTTGTTTTTATGTG CTGCAATGACTACATGTCTAGAAATTGCTTCCTGCTCATGATCCTGCTGTTTTCCTTCTTATTTCATTTCCATTACTCAG TAATCAATTACTTCCAATACTATATTTTCTCTGTAGACTGTGCTCAATAGAGTTAATACATACACAAATATCACTTATAA GGAAGACCCTACAATTTTTGCTTGGGAGTTGATGAATGAGCCTCGATGCTCCTCAGATTCCACAGGTGATAAGTTACAGG TTTGCCCCTTAGAATCTTCTTCTGGCTTCCAAAACAGAAGTGAAGGGTATACCCTGCATTTTCTAGTAGCATATAACCAA TTCACAACACACTAACAATTAGAATTCCACTTGAATATATATTTCTTAGGATTGGATACAAGAAATGGCATTCCATGTTA AGAAAATTGATCCAAAACACATGGTGGAGGTTGGATTGGAAGGATTTTATGGCCCTTCAACACCTCAGAGAGTTCAGTTC AATCCAAATACTTATGCTCAACAGGTTGGAACTGATTTCATCAGGAACCACCAGGTTCTTGGTGTGGACTTTGCTTCTGT TCACATATACGCTGACTCTTGGTAAGCTGTGTTTAGTAATGATATTGTTTTGCTCATATATGTGAAGTTATCATAAAAAT GTCTTCTTCTCTCCATCCATTTATGCAAACTGTTACATTCATACCAATATCATATTCATATGCATTTGCATACTTATCTA GTCTGTTATAAACACTACTATTTGTCTTAAATCTTAATAATGTATTTGTTCATCCAATTTCCTAACATTTCTAGTAGAAG AATAATATAAAATTATTTATGTGTATTCATTCGATAGTTAGTTAGTTCATGACATGATATTAGAGTCTCTATAACCAAGT CTAAATTTCGATCCTCGTTGCCCCTGTTATTCTAGTATAAAATTGAATTTCAGCACACAATATATGAACCTGAGTATTGT GCACACTTCAAGTTCAATGTGAACATGTGTATGTTAGAAGTATAATATAAAATCATTCATTTTGTTTACCCAACAATTTA AGCTTTTGGGCTAATTGGTTCATGACAGTTTCTAACTGAATTTCCTGGTTGAAGGATTTCACCACAAATTGCTGATACTC ATCTCCCATTTATAAAATCTTGGATGGAAGCCCACATTGAGGATGCTGAAAACTATCTTGGAATGCCTGTTGTTTTTTCT GAGTTCGGTGTGTCTTCCAAGGATTCTGGCTACAATTCAACATACAGAGACACAGTAATCAGCACTGTGTACAGCACCAT CCTGAACTCTACAAAGAAAGGAGGGAGTGGAGCTGGAAGCCTTTTGTGGCAGGTTTTCCCTGATGGAACAGATAACATGG ATGATGGGTATGCAGTTGTTTTCTCAAAATCTCCTTCCACCTCAAGTATTGTGTCCCTTCAATCCACTAGGCTTGCTCTA TTCAACTCCTTTTGCTCTTCAAAATGCAAATGGAGATGTAAGAAGAAAAAAATAGTGGAGAAAATAATGTATCATGATGA ACTCTAA
CDS sequence (LotjaGi1g1v0458300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGATATGGAAGAAGATGAATGGCAGATGGTGCAGAAGAAAGGAAGCCAATTTGTGGTAAATGACCAACCTTTCTA CATCAATGGATTCAACACCTACTGGCTGATGGTGTTTGCTGCAGATGAGTCAACCAGAGGAAAGGTCACTGAAGTGTTCA AACAAGCATCCTCAGTGGGCATGACAGTTTGCAGGACTTGGGCCTTCAATGATGGCCAGTGGCGCGCCCTGCAGAAATCC CCATCAGTTTATGATGAAGAAGTCTTCAAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAGTACAAAATCAGGTTAAT ATTGTCATTGGTTAACAACTGGGAAGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAAAGATGCTGGTCTAGACT TGACTTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAACTACTACAAGGCCCATTATAAATTGACTGTGCTCAAT AGAGTTAATACATACACAAATATCACTTATAAGGAAGACCCTACAATTTTTGCTTGGGAGTTGATGAATGAGCCTCGATG CTCCTCAGATTCCACAGGTGATAAGTTACAGGATTGGATACAAGAAATGGCATTCCATGTTAAGAAAATTGATCCAAAAC ACATGGTGGAGGTTGGATTGGAAGGATTTTATGGCCCTTCAACACCTCAGAGAGTTCAGTTCAATCCAAATACTTATGCT CAACAGGTTGGAACTGATTTCATCAGGAACCACCAGGTTCTTGGTGTGGACTTTGCTTCTGTTCACATATACGCTGACTC TTGGATTTCACCACAAATTGCTGATACTCATCTCCCATTTATAAAATCTTGGATGGAAGCCCACATTGAGGATGCTGAAA ACTATCTTGGAATGCCTGTTGTTTTTTCTGAGTTCGGTGTGTCTTCCAAGGATTCTGGCTACAATTCAACATACAGAGAC ACAGTAATCAGCACTGTGTACAGCACCATCCTGAACTCTACAAAGAAAGGAGGGAGTGGAGCTGGAAGCCTTTTGTGGCA GGTTTTCCCTGATGGAACAGATAACATGGATGATGGGTATGCAGTTGTTTTCTCAAAATCTCCTTCCACCTCAAGTATTG TGTCCCTTCAATCCACTAGGCTTGCTCTATTCAACTCCTTTTGCTCTTCAAAATGCAAATGGAGATGTAAGAAGAAAAAA ATAGTGGAGAAAATAATGTATCATGATGAACTCTAA
Protein sequence (LotjaGi1g1v0458300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRDMEEDEWQMVQKKGSQFVVNDQPFYINGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKS PSVYDEEVFKALDFVVSEAKKYKIRLILSLVNNWEAYGGKAQYVKWGKDAGLDLTSDDDFFSHPTLRNYYKAHYKLTVLN RVNTYTNITYKEDPTIFAWELMNEPRCSSDSTGDKLQDWIQEMAFHVKKIDPKHMVEVGLEGFYGPSTPQRVQFNPNTYA QQVGTDFIRNHQVLGVDFASVHIYADSWISPQIADTHLPFIKSWMEAHIEDAENYLGMPVVFSEFGVSSKDSGYNSTYRD TVISTVYSTILNSTKKGGSGAGSLLWQVFPDGTDNMDDGYAVVFSKSPSTSSIVSLQSTRLALFNSFCSSKCKWRCKKKK IVEKIMYHDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 411 | 410 | 1.2E-279 | – | |
PANTHER | 2 | 411 | 410 | 1.2E-279 | – | |
Gene3D | 8 | 384 | 377 | 6.0E-132 | – | |
SUPERFAMILY | 12 | 368 | 357 | 5.13E-76 | ||
Pfam | 22 | 326 | 305 | 9.3E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0458300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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