Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0458300.5

Overview

Field Value
Gene ID LotjaGi1g1v0458300
Transcript ID LotjaGi1g1v0458300.5
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Mannan endo-1,4-beta-mannosidase; TAIR: AT5G01930.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9LZV3|MAN6_ARATH Mannan endo-1,4-beta-mannosidase 6; TrEMBL-Plants: tr|A0A072U0R9|A0A072U0R9_MEDTR Mannan endo-1,4-beta-mannosidase; Found in the gene: LotjaGi1g1v0458300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:96169532..96172462) extracted from Lotus japonicus Gifu genome v1.2.

ATTTGATATCCCTTCACCCTCTAGCTATCGTATTTTATATCTGCAATGTTATATGTTACGAATGAAAGTTGCAAGAAATG CTGATATGACACAACTCACACAAGTACACAACTAACTTCATTATTTGACAGAAATCATTGGAGTAGTGAGAGATAATTAC TACCATATCTTATGTTTCGTATAGTAAAATTTAGTATATCCCATCATCTTATGTTGGTCAATCCATGTGCTTGTTTCTTT AACCATGATAGTTGAACTTTTTTACTTTTTGCTTTCTTACTAAAGGAGTGAAATGAGGGATATGGAAGAAGATGAATGGC AGATGGTGCAGAAGAAAGGAAGCCAATTTGTGGTAAATGACCAACCTTTCTACATCAATGGATTCAACACCTACTGGCTG ATGGTGTTTGCTGCAGATGAGTCAACCAGAGGAAAGGTCACTGAAGTGTTCAAACAAGCATCCTCAGTGGGCATGACAGT TTGCAGGACTTGGGCCTTCAATGATGGCCAGTGGCGCGCCCTGCAGAAATCCCCATCAGTTTATGATGAAGAAGTCTTCA AGGTGCTCCTTAATTCTTTTGGTATTTTATGTACTCCCACACTTGCTTAGTCTAATGAACTTTTTGCTACTTCTGATTGA AGCATTACGGAGAGGGTTAGACACCAATCTCATGAATTGTTTGCTTGTGTAAGCTTACATGGTGATTAGAATTAGATTAT GATACAATCAAATGGTGCTTGTTTGGAAATCATTCTATCATTGGTTCTGAAACCAGAATCAACTCTGAGGAGAAGCTTAC GTGAGTAGCTTCTGAGTTTCATATTGATTCTGAGGTAACAGAAGCTGATCTAAACATGCTGAGCTATTATCAGTGTAGCT AATTATCATTCCTCTCCGCAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAGTACAAAATCAGGTTAATATTGTCATT GGTTAACAACTGGGAAGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAAAGATGCTGGTCTAGACTTGACTTCTG ATGATGACTTCTTCTCACATCCAACTCTTAGAAACTACTACAAGGCCCATGTTAAGGCAAGTTTATTTTCTTAGAGTTTC AGTTGGTTTGTTAACATGTTGTTTAGTTAGTTAGTTTGGTTATGTTAATTTGAGTTGGTTATGATGATATTGGTGTGTCT GATTGTAGTATAAATTGGTACTTGCATCTTCTTTTCATAAATATGGAACCTCCTTGGTTTCCTCTCTCACTTGAAATTCT CTCTTCCTCCCTCTCTCTCTTTCTCAATCTCCCCATTTTACTCAAACATTTAAATATAACAAGAGGACCAAACCACCATG GGTTATTTTGATTTGGACACTGGAGTTAAGCTTGTTTTTATGTGCTGCAATGACTACATGTCTAGAAATTGCTTCCTGCT CATGATCCTGCTGTTTTCCTTCTTATTTCATTTCCATTACTCAGTAATCAATTACTTCCAATACTATATTTTCTCTGTAG ACTGTGCTCAATAGAGTTAATACATACACAAATATCACTTATAAGGAAGACCCTACAATTTTTGCTTGGGAGTTGATGAA TGAGCCTCGATGCTCCTCAGATTCCACAGGTGATAAGTTACAGGTTTGCCCCTTAGAATCTTCTTCTGGCTTCCAAAACA GAAGTGAAGGGTATACCCTGCATTTTCTAGTAGCATATAACCAATTCACAACACACTAACAATTAGAATTCCACTTGAAT ATATATTTCTTAGGATTGGATACAAGAAATGGCATTCCATGTTAAGAAAATTGATCCAAAACACATGGTGGAGGTTGGAT TGGAAGGATTTTATGGCCCTTCAACACCTCAGAGAGTTCAGTTCAATCCAAATACTTATGCTCAACAGGTTGGAACTGAT TTCATCAGGAACCACCAGGTTCTTGGTGTGGACTTTGCTTCTGTTCACATATACGCTGACTCTTGGTAAGCTGTGTTTAG TAATGATATTGTTTTGCTCATATATGTGAAGTTATCATAAAAATGTCTTCTTCTCTCCATCCATTTATGCAAACTGTTAC ATTCATACCAATATCATATTCATATGCATTTGCATACTTATCTAGTCTGTTATAAACACTACTATTTGTCTTAAATCTTA ATAATGTATTTGTTCATCCAATTTCCTAACATTTCTAGTAGAAGAATAATATAAAATTATTTATGTGTATTCATTCGATA GTTAGTTAGTTCATGACATGATATTAGAGTCTCTATAACCAAGTCTAAATTTCGATCCTCGTTGCCCCTGTTATTCTAGT ATAAAATTGAATTTCAGCACACAATATATGAACCTGAGTATTGTGCACACTTCAAGTTCAATGTGAACATGTGTATGTTA GAAGTATAATATAAAATCATTCATTTTGTTTACCCAACAATTTAAGCTTTTGGGCTAATTGGTTCATGACAGTTTCTAAC TGAATTTCCTGGTTGAAGGATTTCACCACAAATTGCTGATACTCATCTCCCATTTATAAAATCTTGGATGGAAGCCCACA TTGAGGATGCTGAAAACTATCTTGGAATGCCTGTTGTTTTTTCTGAGTTCGGTGTGTCTTCCAAGGATTCTGGCTACAAT TCAACATACAGAGACACAGTAATCAGCACTGTGTACAGCACCATCCTGAACTCTACAAAGAAAGGAGGGAGTGGAGCTGG AAGCCTTTTGTGGCAGGTTTTCCCTGATGGAACAGATAACATGGATGATGGGTATGCAGTTGTTTTCTCAAAATCTCCTT CCACCTCAAGTATTGTGTCCCTTCAATCCACTAGGCTTGCTCTATTCAACTCCTTTTGCTCTTCAAAATGCAAATGGAGA TGTAAGAAGAAAAAAATAGTGGAGAAAATAATGTATCATGATGAACTCTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0458300.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGGATATGGAAGAAGATGAATGGCAGATGGTGCAGAAGAAAGGAAGCCAATTTGTGGTAAATGACCAACCTTTCTA CATCAATGGATTCAACACCTACTGGCTGATGGTGTTTGCTGCAGATGAGTCAACCAGAGGAAAGGTCACTGAAGTGTTCA AACAAGCATCCTCAGTGGGCATGACAGTTTGCAGGACTTGGGCCTTCAATGATGGCCAGTGGCGCGCCCTGCAGAAATCC CCATCAGTTTATGATGAAGAAGTCTTCAAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAGTACAAAATCAGGTTAAT ATTGTCATTGGTTAACAACTGGGAAGCATATGGTGGCAAAGCACAATATGTGAAATGGGGCAAAGATGCTGGTCTAGACT TGACTTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAACTACTACAAGGCCCATTATAAATTGACTGTGCTCAAT AGAGTTAATACATACACAAATATCACTTATAAGGAAGACCCTACAATTTTTGCTTGGGAGTTGATGAATGAGCCTCGATG CTCCTCAGATTCCACAGGTGATAAGTTACAGGATTGGATACAAGAAATGGCATTCCATGTTAAGAAAATTGATCCAAAAC ACATGGTGGAGGTTGGATTGGAAGGATTTTATGGCCCTTCAACACCTCAGAGAGTTCAGTTCAATCCAAATACTTATGCT CAACAGGTTGGAACTGATTTCATCAGGAACCACCAGGTTCTTGGTGTGGACTTTGCTTCTGTTCACATATACGCTGACTC TTGGATTTCACCACAAATTGCTGATACTCATCTCCCATTTATAAAATCTTGGATGGAAGCCCACATTGAGGATGCTGAAA ACTATCTTGGAATGCCTGTTGTTTTTTCTGAGTTCGGTGTGTCTTCCAAGGATTCTGGCTACAATTCAACATACAGAGAC ACAGTAATCAGCACTGTGTACAGCACCATCCTGAACTCTACAAAGAAAGGAGGGAGTGGAGCTGGAAGCCTTTTGTGGCA GGTTTTCCCTGATGGAACAGATAACATGGATGATGGGTATGCAGTTGTTTTCTCAAAATCTCCTTCCACCTCAAGTATTG TGTCCCTTCAATCCACTAGGCTTGCTCTATTCAACTCCTTTTGCTCTTCAAAATGCAAATGGAGATGTAAGAAGAAAAAA ATAGTGGAGAAAATAATGTATCATGATGAACTCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0458300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRDMEEDEWQMVQKKGSQFVVNDQPFYINGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKS PSVYDEEVFKALDFVVSEAKKYKIRLILSLVNNWEAYGGKAQYVKWGKDAGLDLTSDDDFFSHPTLRNYYKAHYKLTVLN RVNTYTNITYKEDPTIFAWELMNEPRCSSDSTGDKLQDWIQEMAFHVKKIDPKHMVEVGLEGFYGPSTPQRVQFNPNTYA QQVGTDFIRNHQVLGVDFASVHIYADSWISPQIADTHLPFIKSWMEAHIEDAENYLGMPVVFSEFGVSSKDSGYNSTYRD TVISTVYSTILNSTKKGGSGAGSLLWQVFPDGTDNMDDGYAVVFSKSPSTSSIVSLQSTRLALFNSFCSSKCKWRCKKKK IVEKIMYHDEL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31451:SF52
2 411 410 1.2E-279 –
PANTHER
PTHR31451
2 411 410 1.2E-279 –
Gene3D
G3DSA:3.20.20.80
8 384 377 6.0E-132 –
SUPERFAMILY
SSF51445
12 368 357 5.13E-76
IPR017853
Pfam
PF00150
22 326 305 9.3E-17
IPR001547

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0458300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…