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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0459200 |
| Transcript ID | LotjaGi1g1v0459200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phototropic-responsive NPH3 family protein; TAIR: AT3G08570.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9Z7|Y3857_ARATH BTB/POZ domain-containing protein At3g08570; TrEMBL-Plants: tr|A0A0B2S5U1|A0A0B2S5U1_GLYSO BTB/POZ domain-containing protein; Found in the gene: LotjaGi1g1v0459200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96264582..96267413) extracted from Lotus japonicus Gifu genome v1.2.
GTCTATACCATTACATAGTAATCTTGAAAGATAAAGGTTATAGTATGTTTGAAAATTCTTCTGCAGTTGATTCTATAGCC AAAATCAGTTCTAGAAGGAAAGAAGCTTATGGGAGTAGTTTCTAGGTGACTCTGAGGAAAAATAAGCTAATTCAAACATA TATTAATGTACAGAACATGTTTGATTGTTAGATATTTGGAGTTATTAAGGTAGAGAGAGTTATCTAAATTCTTGGGAGAA TAGTAGAATTGCAGGTTTAAAGACAATTGTCATGCCATATTGATCTTTTTTTTATGGCAGGATTTTTGCTGATGTTGCTG GTGACATTACGATTGTTGTTGATGGGGAATCATTTCTGCTGCACAAGGTAAATCTTTGAAGATGTGGTTTACAGACTACT TGACAAATTCATGAGCTTGTTCTGTTATACTAGTTTCTATGAATTGGGATATTATGAATACTTTATGTGAATCCATAACA TGTTAGCATGGACTAAAATTTACCACTGGTTTTCCAAAAGTAATGCCTGCTTTAGAAATCAAAGGGAAAAGCTCATGACT CTATTTGGCTTCTTTTGAGTACACATTAGCTTCCCCCATTATATCTGTGAGCATCACTGTAAATAAGCGTTAGTCCTCAC TTCAAGACAAAAAACGGATGAAGCTTTTCTTGTTGATTGAGATGAAAATTCGTTTACATTGCAGACAACTAGTAACCAAA CACACTCAGATGATGTCTTAAATTGACCAAAACAGTTCCTTTGAACTCAAAATCTTTAAAAACTTACTTTTTCCTTGTTT TCATGAAGTTTCCCTTGGTGACCCTGAGTGGGAAGATCAGGAAGATGGTTGCTGAAGCCAAAGGCTCCAATCTTTCGAAC TTGGAGCTCCTCAACTTTCCAGGGGGATACCAGACATTTGAACTCGCCATGAAGTTCTGTTATGGGATGAATTTCGAGAT CACAACATTCAATGTCGCGAGGCTACGTTGCGCAGCTGAGTACCTGGAAATGACAGAAGAATACCGGGAGCGAAACCTTG TCACAAGAACAGATACTTATCTCAATGAGATTGTCTTTCAAAGTCTTCAGAAGTCAGTGGAAGTATTATCCACCTGTGAG ATGCTACCTCCAGACATGGTGGACGAGATTAGAATATCAAAAGGGTGTGTAGAAGCCATTGCAATGAATGCATGCAAGGA GCAACTAGCTTCTGGTTTATCTAAATTAGATTGTGATGGTGAATCTAAAGAACTAAAGGAAGGTTGTGTTGCATGGTGGG TTGAAGATCTCTCAGTGTTGAGTATTGACTTCTTCCAGAGAGTTATAAGTGCTATGGGAAGAATGGGAGTTGGATCAGAT AACATTATTTCTTCACTGATTCATTATGCTGAATCATCACTGAAGGGTATTGGGAAGAGTCAATTTTGGAACCCATCAAG GACAAATTCAAGTCCAACCAATGGAGAAAAGGATCAAAGGACAATTGTGGAAACTCTTGTGAGTCTCATGCCAACAGACA AAAGCTCTTCCATTCCATTGACCTTTTTATTTGGTATGTTGAAGATGGCTATCATGTTAGGTGCAACCATTTCTTGTAAG CTTGAGCTTGAAAGGAGGATAGCATTAAGGTTGGAAATGGTTTCACTTGATGATCTTCTTATACCATCTCTGCAGAGTGG GGATTCCTTGTTTGATGTCGATACAGTTCACAGGCTGCTGGTGAATTTCTTGCAGAGGATTGATGAGGAAGAAAGTGAAG ATTATGGATATGAATCTGATGAGGTTGGTTCTAATTGCCATGGTTCTCTGCTAAAAGTGGGGCAGCTTATGGATGCTTAT TTAGCAGAAATTGCTCCTGATCCTTGCTTAAGTCTACCGAAATTCATTGCTTTGATAGAGGCACTTCCTGATTATGCTCG TGTCATTGACGATGGCCTTTATAGAGCAATCGACATTTATTTGAAGGTAAATTTGCTTCAACTAAAGAGAAAATCCTTGT CTGATTCTAATAGTTATAGCATGTTTGGATCAACTTCTCTCTCATCAGAAACAGTTCTACTACTCAGATCCCCAGAATTG ATTTTGACTTCAAAATTAATTATAGAAGGGTTTCCAAACACGCACTTAAGCAAATTCTAGTCAAACTTCATTCTTGATCA TGCAACAGTTACACTTACAAGAATTAGTATTAGCAGGTTTCTCATGAAAAACGTGGTTCGAGTAGTAACCCCCTAAAACT AATCAGTTGAGTGTGTTTGTTATTCATTTTTCCTTCTTCATGTTGACAAAACACAACACCTCTTTTTGTTCAGGCACATA CAACATTGACAGAACAAGAATGCAAGAAGCTTTGCAAGTTTATAGACTGCCAGAAGCTGTCTCAAGAAGCATGCAACCAT GCTGCCCAGAACGACCGGCTTCCAGTGCAGATGGTGGTGCAAGTCCTGTATGTTGAGCAGCTGCGTTTGAAAAATGCACT GTCAGGAAGTTCAGGAGATGGGCTGCTATCACAGAGAATAAGCAGCGGTGTTCCAAGCGCTGCCATGTCGCCGAGAGATA ACTACGCTTCTCTGCGGCGGGAGAACAGAGAGCTGAAGCTAGAGATTTCGAGATTGAGGGTGAGGCTGAGCGAGTTGGAG AAGGAGCAGATGTTCATGAAACAAGGCATGATTGATAAGGCGGGAAATGGAAGAACATTCTTAACCTCTATTTCTAAGGG GATAGGGAGAATTGCCATGTTTAGCAGTCAAGGTGGAGGTAAACGCCAGAAATCGGTTAGGAAGTCTAGGGAGGGTAAAA CTGGGAGGAGTAGGAGATACTCTGTCTCATAG
CDS sequence (LotjaGi1g1v0459200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCTGAAGCCAAAGGCTCCAATCTTTCGAACTTGGAGCTCCTCAACTTTCCAGGGGGATACCAGACATTTGAACT CGCCATGAAGTTCTGTTATGGGATGAATTTCGAGATCACAACATTCAATGTCGCGAGGCTACGTTGCGCAGCTGAGTACC TGGAAATGACAGAAGAATACCGGGAGCGAAACCTTGTCACAAGAACAGATACTTATCTCAATGAGATTGTCTTTCAAAGT CTTCAGAAGTCAGTGGAAGTATTATCCACCTGTGAGATGCTACCTCCAGACATGGTGGACGAGATTAGAATATCAAAAGG GTGTGTAGAAGCCATTGCAATGAATGCATGCAAGGAGCAACTAGCTTCTGGTTTATCTAAATTAGATTGTGATGGTGAAT CTAAAGAACTAAAGGAAGGTTGTGTTGCATGGTGGGTTGAAGATCTCTCAGTGTTGAGTATTGACTTCTTCCAGAGAGTT ATAAGTGCTATGGGAAGAATGGGAGTTGGATCAGATAACATTATTTCTTCACTGATTCATTATGCTGAATCATCACTGAA GGGTATTGGGAAGAGTCAATTTTGGAACCCATCAAGGACAAATTCAAGTCCAACCAATGGAGAAAAGGATCAAAGGACAA TTGTGGAAACTCTTGTGAGTCTCATGCCAACAGACAAAAGCTCTTCCATTCCATTGACCTTTTTATTTGGTATGTTGAAG ATGGCTATCATGTTAGGTGCAACCATTTCTTGTAAGCTTGAGCTTGAAAGGAGGATAGCATTAAGGTTGGAAATGGTTTC ACTTGATGATCTTCTTATACCATCTCTGCAGAGTGGGGATTCCTTGTTTGATGTCGATACAGTTCACAGGCTGCTGGTGA ATTTCTTGCAGAGGATTGATGAGGAAGAAAGTGAAGATTATGGATATGAATCTGATGAGGTTGGTTCTAATTGCCATGGT TCTCTGCTAAAAGTGGGGCAGCTTATGGATGCTTATTTAGCAGAAATTGCTCCTGATCCTTGCTTAAGTCTACCGAAATT CATTGCTTTGATAGAGGCACTTCCTGATTATGCTCGTGTCATTGACGATGGCCTTTATAGAGCAATCGACATTTATTTGA AGGCACATACAACATTGACAGAACAAGAATGCAAGAAGCTTTGCAAGTTTATAGACTGCCAGAAGCTGTCTCAAGAAGCA TGCAACCATGCTGCCCAGAACGACCGGCTTCCAGTGCAGATGGTGGTGCAAGTCCTGTATGTTGAGCAGCTGCGTTTGAA AAATGCACTGTCAGGAAGTTCAGGAGATGGGCTGCTATCACAGAGAATAAGCAGCGGTGTTCCAAGCGCTGCCATGTCGC CGAGAGATAACTACGCTTCTCTGCGGCGGGAGAACAGAGAGCTGAAGCTAGAGATTTCGAGATTGAGGGTGAGGCTGAGC GAGTTGGAGAAGGAGCAGATGTTCATGAAACAAGGCATGATTGATAAGGCGGGAAATGGAAGAACATTCTTAACCTCTAT TTCTAAGGGGATAGGGAGAATTGCCATGTTTAGCAGTCAAGGTGGAGGTAAACGCCAGAAATCGGTTAGGAAGTCTAGGG AGGGTAAAACTGGGAGGAGTAGGAGATACTCTGTCTCATAG
Protein sequence (LotjaGi1g1v0459200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAEAKGSNLSNLELLNFPGGYQTFELAMKFCYGMNFEITTFNVARLRCAAEYLEMTEEYRERNLVTRTDTYLNEIVFQS LQKSVEVLSTCEMLPPDMVDEIRISKGCVEAIAMNACKEQLASGLSKLDCDGESKELKEGCVAWWVEDLSVLSIDFFQRV ISAMGRMGVGSDNIISSLIHYAESSLKGIGKSQFWNPSRTNSSPTNGEKDQRTIVETLVSLMPTDKSSSIPLTFLFGMLK MAIMLGATISCKLELERRIALRLEMVSLDDLLIPSLQSGDSLFDVDTVHRLLVNFLQRIDEEESEDYGYESDEVGSNCHG SLLKVGQLMDAYLAEIAPDPCLSLPKFIALIEALPDYARVIDDGLYRAIDIYLKAHTTLTEQECKKLCKFIDCQKLSQEA CNHAAQNDRLPVQMVVQVLYVEQLRLKNALSGSSGDGLLSQRISSGVPSAAMSPRDNYASLRRENRELKLEISRLRVRLS ELEKEQMFMKQGMIDKAGNGRTFLTSISKGIGRIAMFSSQGGGKRQKSVRKSREGKTGRSRRYSVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 541 | 541 | 4.0E-300 | ||
| PANTHER | 1 | 541 | 541 | 4.0E-300 | – | |
| Phobius | 1 | 231 | 231 | - | – | |
| CDD | 1 | 68 | 68 | 1.82939E-20 | – | |
| SUPERFAMILY | 8 | 58 | 51 | 3.3E-5 | ||
| ProSiteProfiles | 143 | 425 | 283 | 89.07 | ||
| Pfam | 144 | 401 | 258 | 1.1E-89 | ||
| Phobius | 232 | 255 | 24 | - | – | |
| Phobius | 256 | 546 | 291 | - | – | |
| Coils | 458 | 485 | 28 | - | – | |
| MobiDBLite | 518 | 546 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0459200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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