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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0462700 |
| Transcript ID | LotjaGi1g1v0462700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cornichon family protein; TAIR: AT1G12390.1 Cornichon family protein; Swiss-Prot: sp|Q84W04|CNIH4_ARATH Protein cornichon homolog 4; TrEMBL-Plants: tr|I3SXC4|I3SXC4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0462700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96703464..96707301) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTGTTTTGTTTAAATCCATACCTTTACAAAAAAAAAAAAGGGACGGTGTGAAAAGATAAAAAAGCGTGTTCATTCA AATTTGATATCCCGAAAAGAAGGAAACCGTTTAAGAAAAGCAGAGTCGGACGAACGAAGAAGAGAGAAAGAGGCATGCGG TGGTGGCTGTTATGGCTGAAGTCTTATATTGGATCTCTACGTTTGTTCTCATCTTAACTCTTCTTTGTATGCTCGGTTAC CAGGTCAATCACATCATCCATTCTCATGTTTTCTAGTTATCATTAATTAACTGCTTGTTTTGGATTTGATCATCATTGTT GTAAGCATTGCATACAATGATCATGCCCTTTGTTGATTTGTGTGAATCATCGTCAGGGTTTTAAATTGCGGTCGCAGTTG CGGTTACCGCCAGAATTGCGGACAAATGCCTGGTTATGCAGCCGCGATACCAATGCAGGCTGCGGCCGCAATTTGAAACC CTGATGACGATATAATCAACCAGAGCAATGGCATCACAATTTAGATTCTGGTTGAATTTTAATAATTCAAACATAAATTT GTAATTATAAAAATTGCTTATTCTGTTTTCAATTTCTTGCCTTTTTTTTATAGGAGGGCCTTTCAGAAATTTGGTGTTAA TTAGTGCTTACCTTGCTTTTGTATGTGATTTTCTTTAAAGAAAAATTCAATGGTAAAAGCTAGTTTTATGATTAAGTGCA TAGCTGGACTCAATCTCTCTATTGCATGCTTCATTGTTCATTTTTTGTGTAGTTTTTTGCATGGCTCTGAAAGAAAATGG CCATTATTTTTAGAAAGTTTCATTTTTTCTTCCTCTGTAAAAGATTAATGGCTTAGATCTTTTCACCTTAACTTGACTAT CATTGTATTGTGTGTGACCATTCAGTTCTGCAATCTCATCGTTGATCATTTGTATTAATTATACTAGCCTTCTATATTTT GTTTTCTCCTCCAGAAATATAGGTAGTATACTTGTAATAAATCACACCTAGACTACCTTCAAATGCTGGATTTTTAAAAC TATGGCTTTTTAAAGTACGCTGCTGTAGGCAGCAGCTTAAGAAGCCCCAGGGGGTTGGTCTAGTGGAGAATGATAGGGTT TCGTATCTGACAGTTTGCAGGTTTGATTCCCCACTCATCTCCTTGATGAGAGGTAAATGTAAGTCTTCTGTAAGTGCTCT TTGAGCCCGACTGTTTTCTTTGCCTTGCATTAGAGCGCCGTCCCCGTACCCTAAATTTTATGTGTCAAAAGATAAAAACA GCGGCATGAGTTGAAATAGTATGCTATACTTGTTTTTGAACCAATCATTGTCTGCAATCTATAAGTGCAAGTTCGCAAAG CTTCTGCTTACTATTTTATTCATCCCATGAATTTTTTATTGCAGCTTATTTTGTTGGTGGACCTGGAGTTTGATTATATC AACCCTTATGATTCAACATCTCGGATAAACCAGGTTGTCTTACCAGAGTTCATAATCCTGGGAATCTTCTGCTTTACCAA TCTTATAGCAGGACATTGGTTTACATTCTTCCTATCTCTCCCTTGCATGTATTACAATGCGAGATTGTAAGTTTTTTCCG CTGACCTTCTCAAAAAGTTTTTGTTTTATTAATTCAGTCATGTTAAACAGTTCGAGCAGATTTTATTTCATATCTGCAAA TTTTATAACTATAAACCTTGGTGAAAATACAATATAATCCTTCTTCAATTCTTGCACATGAAACTTAAATTGGAGCAATG AGGCATGTATAGGCAGAATTTAATTCATAACTGAATCATTTTCTTTTCAAAGAAAAGTTGACTTCAATTCCACATACCAT AGGTAAGTTGATACTCTAGTGTGAACTGTGAAGTTAGTAATTTTAAACATTGTATTGGATGTTGTTTCTGCAGGCTTCTC AATCTTCATACTTTGAGCATTTGTGTTAATTTAGGGGGTTGAAAGTGTTGGTTATGTTGAAGTAAAACTCAATAAAAAAT GGAATGATTTGTGACTGAGATTTGGGGATGCAACTTATTGTTTTTGAATTTGAGGGGCTGTTTGATGGCTGACAATGACT ATGTTGGAGATTACAGATTTTGAATGAATCTAGACACCAGGGCTGCTACTTGTAAAATCAAATAATGAACTTCAAGTGGT TTTTCAAACAGTTTCCTACACTCTAATTTGAGGGATAACCTTGAAACCCTTGAAAACACAGTTAGGACTATGACCATTGT CATGGTGAAAATCCCTCAAATACTTTGGAGACATTTTATAGAAGACATGATTAGAAACTGAACTAATCAAGGACTATCAA TATATAAGTTGCATGATTTTTAAAGTTTTGTTTCTGTTGAAAACGAACCGCAGTTTAGCATGTTAGTTTGAAACGCATGA GGTTCTGTTTCACATCTGTATATATGACATAGTCTGGACTGCCATTCCAAGAACTAAGCATGCAATTGACATTCAAATTA TCTGAATAATCAGATTTCTTTAAACTTTCAAACATCTCAGTATTACAATGTATATTTGCAGAATAGTGTAATGCTGTATA AGATAATGAAATCTAGAAAGCAAAGTCAAGTTCAAATTTTATCTTCCTAAAACATTAGCTGTTATTACATATGCACATTA TTTTCAGCATATTGCTACCCCTCATTTGACTTGGAAGCTAATACCAGGTACTTCAAAAGAGAACACTTGGCAGATGTTAC AGAGATCTACAATAAGCTGAAATGGGAGAAAAACAAGCGCTTGTTCAAAGTGGCAAACCTTGTCATAATATTTGTCTTTT CTATATTGAGGTATTATGATTCGAAATGCATTATTTTGTGAATTGCCCTGCCTTATCTCAAAGGAAAATTTGGTGATTGT TTTCTCATCTGATTGTGTTTTAGCTTGGTATGGACCCTTACGGAGGATGTGCATTAAGTGGTGGCTTACCTTCCATGCCT CCTGTAAGTTTCCAGTTCCTTTTTGTTTGAACTCTTAGAATCTGATTTAGGTTTAACCCTACCACAAAAGCTAGCTCAGG GGCGAGGATCGTTCTACCTTTTTTATAAGGAATATCTAGCCATATTTCTATTCAATGTGAGAGACCTTGACACACACCTC TCATGCCCAGGGCTAAATATTCGGAAGGTGAAGTTTGCAGGACCAAATATCTGGCCCATTTATGGGTGGCCTAATAAATG GATCTACAATATGCTATGATACCACCATTGATATCTTTTGAGTTAGCTTTTAGGGTATAGTTAGACCTAGCCTGAGTTGT AAGATAAACTTTTTGAAGGTTGTTATTCTTTTTATAAATTTATCAGCTGATCAACTTCTTGGAAATGTCAAAGAATTTAC AGGCTGAATTGCTGAGACATTCAAAACCTTTGTGGGAAAATCCATCTTCTGAGCTAAGTTCCATGGACAACAACCATGGT GAGAGCCATCTGCGACAGGCTGAGCTCCTTAGAGAGGGGACATGTGACAATCCACAGCGAAAACGGAGCTTGGGAAGGTG TGATACTCTTAGTGAAGTTTTAGATTCTTGATGTGAATTAGAGTATTTTAGGCAGAATAGAAGTTTAGAGCTTGTAATGA TTTTGGTACAAACATAAACTGATGTAACAACCCAGTCTTACGGTAACAACATTTTCTGATAGGTTAAATTAACATTATTT ATGAGATATGCATGCAACAAGGTTTAAATTCTCTTTTTTGCATGCACTTCTTCTTTTCTCTCTATCTCTCTCTTCTTCTT ATGAACAAGATCTTGCTTCCTCTTGTTGTTCTTTCAAAATACAAATTAGTCTGCTTGTAGTTGCACTACAAATTCATC
CDS sequence (LotjaGi1g1v0462700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAGTCTTATATTGGATCTCTACGTTTGTTCTCATCTTAACTCTTCTTTGTATGCTCGGTTACCAGCTTATTTT GTTGGTGGACCTGGAGTTTGATTATATCAACCCTTATGATTCAACATCTCGGATAAACCAGGTTGTCTTACCAGAGTTCA TAATCCTGGGAATCTTCTGCTTTACCAATCTTATAGCAGGACATTGGTTTACATTCTTCCTATCTCTCCCTTGCATGTAT TACAATGCGAGATTGTACTTCAAAAGAGAACACTTGGCAGATGTTACAGAGATCTACAATAAGCTGAAATGGGAGAAAAA CAAGCGCTTGTTCAAAGTGGCAAACCTTGTCATAATATTTGTCTTTTCTATATTGAGCTTGGTATGGACCCTTACGGAGG ATGTGCATTAA
Protein sequence (LotjaGi1g1v0462700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEVLYWISTFVLILTLLCMLGYQLILLVDLEFDYINPYDSTSRINQVVLPEFIILGIFCFTNLIAGHWFTFFLSLPCMY YNARLYFKREHLADVTEIYNKLKWEKNKRLFKVANLVIIFVFSILSLVWTLTEDVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 136 | 136 | 8.5E-73 | – | |
| PANTHER | 1 | 136 | 136 | 8.5E-73 | – | |
| SMART | 4 | 125 | 122 | 5.5E-48 | ||
| Pfam | 5 | 123 | 119 | 1.9E-35 | ||
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 5 | 26 | 22 | - | – | |
| Phobius | 27 | 52 | 26 | - | – | |
| Phobius | 53 | 81 | 29 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 82 | 109 | 28 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 110 | 131 | 22 | - | – | |
| Phobius | 132 | 136 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0462700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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