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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0464000 |
| Transcript ID | LotjaGi1g1v0464000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT3G60900.1 FASCICLIN-like arabinogalactan-protein 10; Swiss-Prot: sp|Q9LZX4|FLA10_ARATH Fasciclin-like arabinogalactan protein 10; TrEMBL-Plants: tr|I3SLF3|I3SLF3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0464000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96950554..96953631) extracted from Lotus japonicus Gifu genome v1.2.
CCTGCATTAAATTTTAGTTGGGAGATTAAGTCATTTGATTATTTCTCATCTATCGGATCTTGTTATCTTTGAGAAAAAGC AGAAACTTCTTTCTTCATGCAATGTGATTTTGGACGATTTTGGCTTCATCCCACCATACAACAACAGAATATGATTATTA TCCTGTCTTATCCTATCCTATCCTGGTCACCAAACGGGCCCTTAGTGCCCTTAACCATGGTTAAGCAAACCCAATACACA CGCTGGCACATTGACAGTTAGACACCACCCTCACCTTCCTCTATCTTTAACTCTTGCTCAACCTCTTCACTCACACACTC TTCATCACTCTCCACTCACTCACTAACTCACTTCACAACCCTCTCTCTCTCTACCACCGCCATTGTCACCCATTTCACCA AAATGGGTAACTACTCCCCTTTCCTCTTCCTCCTTGCTCTCTCCCTCGCCGCCGCCGCCGCCGTCTCCGCCCACAACATC ACCGAGATTCTCGCCGCCAACCCCGACTACAGCTCCTACAACTCCTTCCTCTCCCAAACCAAGCTCGCCGACGAGATCAA CAGCCGCCAAACCATCACCGTCCTCGTCATCCCTAACTCCGCATTCTCCGCCATCACCGCCTCCCACCCTCTCCCCGTCG TCAAGAACGTGCTCAGCCTCCTCATCCTCCTCGACTACTTCGACAACACCAAACTCCACCAACTCACCGACGGCACCACA CTCTCCACCACTCTCTTCCAAACCACCGGCACCGCCACCGGCAACGTCGGATCCGTCAACATCACCGACCTCAAAGGCGG CAAGGTCGCCTTCGGCTCCGCCGCACCCGGCTCCAAACTCGCCTCCACCTACACCAAATCCGTCAAGCAAATCCCCTACA ACATCTCCGTCCTCGAGATCAGCGCTCCGATCATCGCTCCCGGAGTCCTCTCCGCTCCTCCGCCGTCTTCCTCCGTCAAT CTAACCGCTCTCATCGAGAAAGCCGGTTGCAAAACGTTTGCGTCGTTAGTCCTCTCTAACGGCCTCATCAAAACGTTCCA ATCTGCTGCTGACAAAGGCTTGACCATCTTCGCACCGTCGGATGAAGCTTTCAAGGCACGTGGCGTCCCTGATCTGAGCA AGCTCACCAACGCTGAGGTAGTCTCGCTCTTACAGTATCACGCCGTCGCTAAGTACCTGCCAGTTGGATCCCTCAAAACC ACCAAGGATCCAATCAGCACTCTCGCCACCAACGGCGCCGGGAAGTTCGAGTACACTGTCTCCGTCGCCGGCGACTCCGT CACTCTCCACACCGGCGTTGATTCCTCCAGGGTTGCCGACACCGTGCTTGACTCCACTCCACTCTCGATTTACTCTGTCG ACAGCGTGCTTCTTCCACCGGAGCTTTTCGCGAAGTCGCCGTCTCCCGCTCCGGCGCCGGAGCCTGCTAGTGCGCCTTCT CCGGCTCCGGCTTCTGGTCCCTCCCCAGCTTCGGCTCCCTCGCCGCTTCCGGCGTCGCCTCCGGCTCCTGCAGGTGAGAC TCCTGACGGTGCTCCGGCTGATGCTCCGTCTACTGCGGCGGAGAGGAGCACTTCCGGCAAGTCTGCTGGTGTCACGGTGA AAGCTTCTGTGATTCTCACCGTTACTGTAACTGCCTTGTCTGCTTTTGTGATTTCATCTGTTCTCATGTCCTGAATGGTA ATTTCATAGCATTTTTCTGTTATTTTTGTAATTTCGAGTTTTCTTTTATTTTTTCTATTTTCGTGAATGTGATTGGACTG GAGAATTTTTTTGATTTTAATTTTTTTTGCTATTATAGAAGAATTTAGGCTTGTACGTTGAGATTTGAATCGTGTATGTG AAGCTTTTTTTTTGTTATTTTTAATTTTTGCGGTTATGGAAGATTCTAGAGGTGTTGCTATGATGTGGTGCGTGGTATTA TAATTTTTGTGTGGAGGCGAGTGAAGAGCACGTGGTGGGGGTGCGAGTGGGTCCTACGTGTTCCCTGTTTGTTATTGAAG ACAACTGGATCTGACTCTGAAAACTGTGCGGCGAATGGTTTTGCAATTTCCAACTATTTCTTTTTGTTATTAAATGCATG CCTTTTAGATGTTTCTAATCTAGGTGACGCGCGAGGAGGCGCGTTGTGAACTAGGACAATTAATTGACTGCATTCGCTTT AGTTTATCATTATGCCTTTTGTTCCTCAAAAAAAAAAATCATTATGCCTTTTGAGTTTTTAAACGACCTGGTTTTGACGT GGTGATTATGGCATTTGTATCCGTTAATTCACTTTCTTGACTCTGATGCTGTCCCAAATGTATTTTATAATGTGGCTCTT GAAATTATATTAAGAAGCATTTGCTGGATATGTTAGCCAAATTTTTTTTCTAAAAAAAGTGAAGTAGCATGCATAAATAT AGTTAGAAAACATGTTGACTCACGCCAGTATCGTTTAAATGGATGTGTTTATTTTTCATTGTTGTAATGAGAGTTGTGTT AGAGGATAATTTGTAAGTACTTTTATAGGCCTTGTGGCAAGCTATGATGATTTGTGGTGTTGATCGGAGTTGTACTCATT CAAAATTTATATTCATAAATAGTAAATAGTCTCCCTAAGAAAATATTTCCTGTTTAAAATTTGAGTTTAATGGATATGCA CTGACAGTGTAAAATAGTTTTACACAGACATCCAATTGAATTCCGCCAAATCAGAAAATATCTTATTATTTTAATTAAAA TTAAAGTCAAATGTAATTATCTCTCCTATGTGACATGCTTTGATTGGATGACTGTGTAAAACTATTTTACACTGTCAGTG CATATCCATTAAACTCTTAAAATTTTATACGTTCAATTTATGTCACATTAAGGGTGTTGGTTAAAACAGCCAAACAGCTT GATGGATGTTAGTAATGTGGTAGCGTAACGCCATAATCTGGTTATTATTTTTTTAACTTTTGACTATTCCTATTAATTAT TAATTATAATTCATAATGTAGCTGCAAGTGAGGCATACGGTCATTCCATGGCAATTTTTTTTCTTTTGATTTTCAGAATG GAATTTACTCTGTACTCTTGGAATATCTTTGACAGGCT
CDS sequence (LotjaGi1g1v0464000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAACTACTCCCCTTTCCTCTTCCTCCTTGCTCTCTCCCTCGCCGCCGCCGCCGCCGTCTCCGCCCACAACATCAC CGAGATTCTCGCCGCCAACCCCGACTACAGCTCCTACAACTCCTTCCTCTCCCAAACCAAGCTCGCCGACGAGATCAACA GCCGCCAAACCATCACCGTCCTCGTCATCCCTAACTCCGCATTCTCCGCCATCACCGCCTCCCACCCTCTCCCCGTCGTC AAGAACGTGCTCAGCCTCCTCATCCTCCTCGACTACTTCGACAACACCAAACTCCACCAACTCACCGACGGCACCACACT CTCCACCACTCTCTTCCAAACCACCGGCACCGCCACCGGCAACGTCGGATCCGTCAACATCACCGACCTCAAAGGCGGCA AGGTCGCCTTCGGCTCCGCCGCACCCGGCTCCAAACTCGCCTCCACCTACACCAAATCCGTCAAGCAAATCCCCTACAAC ATCTCCGTCCTCGAGATCAGCGCTCCGATCATCGCTCCCGGAGTCCTCTCCGCTCCTCCGCCGTCTTCCTCCGTCAATCT AACCGCTCTCATCGAGAAAGCCGGTTGCAAAACGTTTGCGTCGTTAGTCCTCTCTAACGGCCTCATCAAAACGTTCCAAT CTGCTGCTGACAAAGGCTTGACCATCTTCGCACCGTCGGATGAAGCTTTCAAGGCACGTGGCGTCCCTGATCTGAGCAAG CTCACCAACGCTGAGGTAGTCTCGCTCTTACAGTATCACGCCGTCGCTAAGTACCTGCCAGTTGGATCCCTCAAAACCAC CAAGGATCCAATCAGCACTCTCGCCACCAACGGCGCCGGGAAGTTCGAGTACACTGTCTCCGTCGCCGGCGACTCCGTCA CTCTCCACACCGGCGTTGATTCCTCCAGGGTTGCCGACACCGTGCTTGACTCCACTCCACTCTCGATTTACTCTGTCGAC AGCGTGCTTCTTCCACCGGAGCTTTTCGCGAAGTCGCCGTCTCCCGCTCCGGCGCCGGAGCCTGCTAGTGCGCCTTCTCC GGCTCCGGCTTCTGGTCCCTCCCCAGCTTCGGCTCCCTCGCCGCTTCCGGCGTCGCCTCCGGCTCCTGCAGGTGAGACTC CTGACGGTGCTCCGGCTGATGCTCCGTCTACTGCGGCGGAGAGGAGCACTTCCGGCAAGTCTGCTGGTGTCACGGTGAAA GCTTCTGTGATTCTCACCGTTACTGTAACTGCCTTGTCTGCTTTTGTGATTTCATCTGTTCTCATGTCCTGA
Protein sequence (LotjaGi1g1v0464000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNYSPFLFLLALSLAAAAAVSAHNITEILAANPDYSSYNSFLSQTKLADEINSRQTITVLVIPNSAFSAITASHPLPVV KNVLSLLILLDYFDNTKLHQLTDGTTLSTTLFQTTGTATGNVGSVNITDLKGGKVAFGSAAPGSKLASTYTKSVKQIPYN ISVLEISAPIIAPGVLSAPPPSSSVNLTALIEKAGCKTFASLVLSNGLIKTFQSAADKGLTIFAPSDEAFKARGVPDLSK LTNAEVVSLLQYHAVAKYLPVGSLKTTKDPISTLATNGAGKFEYTVSVAGDSVTLHTGVDSSRVADTVLDSTPLSIYSVD SVLLPPELFAKSPSPAPAPEPASAPSPAPASGPSPASAPSPLPASPPAPAGETPDGAPADAPSTAAERSTSGKSAGVTVK ASVILTVTVTALSAFVISSVLMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 19 | 19 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 31 | 31 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 6 | 422 | 417 | 4.7E-197 | ||
| PANTHER | 6 | 422 | 417 | 4.7E-197 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| ProSiteProfiles | 23 | 171 | 149 | 9.763 | ||
| Gene3D | 24 | 149 | 126 | 5.0E-6 | ||
| Phobius | 24 | 400 | 377 | - | – | |
| SUPERFAMILY | 29 | 173 | 145 | 6.67E-14 | ||
| Gene3D | 175 | 327 | 153 | 1.9E-12 | ||
| SUPERFAMILY | 179 | 327 | 149 | 2.75E-25 | ||
| ProSiteProfiles | 183 | 323 | 141 | 17.934 | ||
| Pfam | 195 | 325 | 131 | 4.1E-19 | ||
| SMART | 221 | 326 | 106 | 3.3E-18 | ||
| MobiDBLite | 332 | 393 | 62 | - | – | |
| MobiDBLite | 332 | 373 | 42 | - | – | |
| Phobius | 401 | 422 | 22 | - | – | |
| Phobius | 423 | 423 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0464000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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