Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0466200 |
| Transcript ID | LotjaGi1g1v0466200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G07870.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SFC7|FB135_ARATH F-box protein At3g07870; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0466200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97443639..97445753) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGGGGTTCCAAATAGATTCACTGGATCCCCAGGGATCAAAGCTGCTGATCCAGAAATCCAACACCTTGAAACTTCTC TCACTGATCTTCCATCACACATCACTATTCAAATTCTTCTAAGACTTCCCCTTAAGTCTATTCTCAAATGCAAATGTGTT TGTAGAAGTTTGAAATCATTGATCTCAAACCCAGAATTCACCCATATACACTTCAAGGAAGCAAAACCCGGTGTCATGAT TCGGTCCAATGATTCAAGAACCCTACACTTACGTGATCAACTGGATATGTTTGAAGATGATGTTGATAAAGAAAAGGTAC TATTTTGTGGTTGTTTTCGTATCTTTTTCAACCATATATGTATAAATCCCTGGAAACTTGACCCTAAATTCAAGCTCCCT TTTCGTGAGAGCAATTATGGTGTGGTGAATTCATGTAACGGCTTTATTTGCTTGTGTGATCCATGGAATAGTAATCCTTT GGCTGTGAGCAACCCAGCTACAGGTGAGTTAATAAGACTTCCAGATTCTCACAGAGTTGATGGTGAAAGTCATGAAACCC TAATATACATTGGTTTTGGTTTCCAACCTAAAACTAATGAATATAAGGTGGTGAGAATTTTGAAGGAATCACCGAGACGT AGTACCTTTTTGTGGTATTCTGAGGATCTGGTTGTTCAAGTTCATACTGTAGGAACATCAACATGGAAGAATGTTGTTGT TGATCCCAGACTTTTCATTAGGAACCTTACATTTCCCACTTGTGTGAAGGGGGTACTTCATTGGATAGTTTCTCATGATT GGAGAGGTTCAATATTGTGTTTCAACTTTGAAAGTGACATCTTTGAATACCTCCCACCTCCTCCTGATGTATTTAAAAAT AATGGAATCACAGATACCGAAAGGATAAGCATGGCAGAGTTAAAGGGATTTCTCTACATATGTGATTCATCTTCTAATGA TACTCCTGTTGTAGTGTGGGTTATGAAGGAATATGGTATTGGAGAATCCTGGACAAAGATTTTCAGCGTTGACACTAGGG GCGAACAATGTTGGCCTTTAGGTGGTTTGTATTGGCTTGTGAAACATTTTGAGAAGGTTGATGCCATATTGATGTTTCAT TCTGACAATTACTTTATCTACTATGAACCCAAAAGGTCTTTTTTCAAGAGTCTTATGGTTCACGGGACTGGATCGGCATT TGAAGTTTTTTCTCACATTCCCAGCCTCATCTCACTGAAGGATGTTGTGAAAAAGGACAATGTAGAGGTTCTCAATGTCT ACTCACGGTAAGAACATAGGTTTTAATATTTTATTGACTAGTTGAATCTAATAGTGCTTTAAAATCACAAGAACTTTGAT ATTGTTAATCACAGGACATCAAGTGAACATGTGTGAGTTTCTATGTTTCCAACATTTATTTGAGCTGGTTCTTTTGGTTT ATTGTCAGGAAGAGAACATTATTTCTACTTATGAATATTGTTACTTAAGGTCAAGATATTTTGTGAATCAAATACTTATG CAAATGAACTATATGTATAATTTTATCTGCTTACTTTTCTACTGTCATTTACATCTTAACTCCTGTGGATACATACTTGC ATTCCTAATTACATATTTTAAACTTTCTTTATAACTACTGTATTGATGGAGGTGATTATGGACAATTGCTTGAATTTTTA ATTCTGGTATCTTCTTATGCTGTGAAGTAGTAGACATTATATCAAAGAGAAATGGTAGATACAGTTGATCATTTAGATCC TCTGCTACGTGCAATTGTAGCCATATTATTGCTCACTAATATTGGTATCATTTAATATAGGCGTGCACAGTAGTATTGTT TTGAAGACGAAAATGAAGTACTTTTCTTGGCTAAGGAGATTATTGATTATGGAATTTTACCTCACTTGACGGGATGGTGA AGAATAAAGTGAAGAATACAACTACAAAGAAGTAATTTTCATTATGTAAAAATGTTCTATATCACAATTTTGGGTTCAGC TATTTGTTATTTTGGATAAATATATCTTGTCTTAGCTTAAAAAATAAATGTTTTGTGTAAACATTAATCTAGAGGTTATG AAAACTTATCTATGGATTCAGGTGAAAGGTGGTAT
CDS sequence (LotjaGi1g1v0466200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCGGTCCAATGATTCAAGAACCCTACACTTACGTGATCAACTGGATATGTTTGAAGATGATGTTGATAAAGAAAA GGTACTATTTTGTGGTTGTTTTCGTATCTTTTTCAACCATATATGTATAAATCCCTGGAAACTTGACCCTAAATTCAAGC TCCCTTTTCGTGAGAGCAATTATGGTGTGGTGAATTCATGTAACGGCTTTATTTGCTTGTGTGATCCATGGAATAGTAAT CCTTTGGCTGTGAGCAACCCAGCTACAGGTGAGTTAATAAGACTTCCAGATTCTCACAGAGTTGATGGTGAAAGTCATGA AACCCTAATATACATTGGTTTTGGTTTCCAACCTAAAACTAATGAATATAAGGTGGTGAGAATTTTGAAGGAATCACCGA GACGTAGTACCTTTTTGTGGTATTCTGAGGATCTGGTTGTTCAAGTTCATACTGTAGGAACATCAACATGGAAGAATGTT GTTGTTGATCCCAGACTTTTCATTAGGAACCTTACATTTCCCACTTGTGTGAAGGGGGTACTTCATTGGATAGTTTCTCA TGATTGGAGAGGTTCAATATTGTGTTTCAACTTTGAAAGTGACATCTTTGAATACCTCCCACCTCCTCCTGATGTATTTA AAAATAATGGAATCACAGATACCGAAAGGATAAGCATGGCAGAGTTAAAGGGATTTCTCTACATATGTGATTCATCTTCT AATGATACTCCTGTTGTAGTGTGGGTTATGAAGGAATATGGTATTGGAGAATCCTGGACAAAGATTTTCAGCGTTGACAC TAGGGGCGAACAATGTTGGCCTTTAGGTGGTTTGTATTGGCTTGTGAAACATTTTGAGAAGGTTGATGCCATATTGATGT TTCATTCTGACAATTACTTTATCTACTATGAACCCAAAAGGTCTTTTTTCAAGAGTCTTATGGTTCACGGGACTGGATCG GCATTTGAAGTTTTTTCTCACATTCCCAGCCTCATCTCACTGAAGGATGTTGTGAAAAAGGACAATGTAGAGGTTCTCAA TGTCTACTCACGGCGTGCACAGTAG
Protein sequence (LotjaGi1g1v0466200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRSNDSRTLHLRDQLDMFEDDVDKEKVLFCGCFRIFFNHICINPWKLDPKFKLPFRESNYGVVNSCNGFICLCDPWNSN PLAVSNPATGELIRLPDSHRVDGESHETLIYIGFGFQPKTNEYKVVRILKESPRRSTFLWYSEDLVVQVHTVGTSTWKNV VVDPRLFIRNLTFPTCVKGVLHWIVSHDWRGSILCFNFESDIFEYLPPPPDVFKNNGITDTERISMAELKGFLYICDSSS NDTPVVVWVMKEYGIGESWTKIFSVDTRGEQCWPLGGLYWLVKHFEKVDAILMFHSDNYFIYYEPKRSFFKSLMVHGTGS AFEVFSHIPSLISLKDVVKKDNVEVLNVYSRRAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 51 | 275 | 225 | 1.5E-27 | – | |
| PANTHER | 51 | 275 | 225 | 1.5E-27 | – | |
| TIGRFAM | 65 | 306 | 242 | 2.8E-26 | ||
| Pfam | 176 | 270 | 95 | 3.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0466200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…