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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0469900 |
| Transcript ID | LotjaGi1g1v0469900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar iron transporter-like protein; TAIR: AT2G01770.1 vacuolar iron transporter 1; Swiss-Prot: sp|Q9ZUA5|VIT1_ARATH Vacuolar iron transporter 1; TrEMBL-Plants: tr|A0A151TBJ0|A0A151TBJ0_CAJCA Fe(2+)/Mn(2+) transporter pcl1; Found in the gene: LotjaGi1g1v0469900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98041850..98044456) extracted from Lotus japonicus Gifu genome v1.2.
ACACCACCGATTACCGATCGGAAAAAAAGAAAAAGAAAAACTGTGTTACGTTATTCACTAATCACTGTGAAAAGTTGAAA CCTGATGAAAAGTGAAAACACCGTAGCAAAGTCATTAATCTTGCCACAACTTACCATTACCACAAGAAATAGTAATAAAA AAATAATGGGTGAGAGAGGTGGTAGCAGCGGTGGCGCCACCACAGGACTCCTCCAGGAGGTGGTGGAGGAGGGTGATGAA TGTGGTGGTGACTTAGAAAGGAACAGGACTGAAAGACCAAAAGAACCTTGGAGAGGAGAATATGTGAAGAGCATAGTGTA TGGTGGGCTTGATGCCATTATTACTTGTTTTTCTCTCATTTCTTCCATCTCAGCTAGCAGTAATTCATCTGGTAATTTTG CAATTCCCTTTTACTAATTATAATTATTCAAATTGATTTGGCAAATAAAATTATTTATTTCATTGATTACTAAGTCTAAT TTGGTGGTACTTAAATCTTCAAAAAACTTTCCCTTCAAAAAAATATCACCACATTCTCATGTTATATATATGCATTAGCA ATGGTGAATTCTACATGAAGTTAATTTATTTTCCCCTTTTCTATTATACCTATTTGAAATTTCAACATGTACTCTTGATC ATTGATAATTGTAGGGATGAGAATAAATGTTTTTGTGTTGTCAAGTACGTATCTATGCGTGTACGAAAATCAGAATGATT GAAATAAAAAAACTCATAATTGAGAGTTGTGGCCCCTTGCTATATACTTGGACATAAAACTTACAAGAACACTTGTCAAG AAATTGGATTTTTCAGTGCTATGATATGATAAAACAATATGTCTCTGCAGGACTACAATATTGTCCTTTTATAAGCAAAT TACACTAATCTGCCCCTGCCGACCTCTACTTCTAGACCATTATTATTATAGTACATATTCATGGCTTTTCTTACTATGGA CATGGTTAACTAAACACGTGCAAAATGAGTGGAGGAGGGTATGGATGAATTATAGAATGGTTGAAATTCTCTATAATTGA TTTGAAACTAAAATCAATTATGGAAAGATATTTTATCTGCGTAACTTATTAAAGACAAATTGATTTTGAGACAAGATAAG TTTAACTAAACATCCTATTAGTCTAGTAAAGGTAATATAGAACCCGTTTGCTCCAGCCAGCTAAGCTAAGCTAGTGCTTT TACAAGTACATTAGCTCCAGCCAGCTCCAATAAATTCGCATCAAAATTGACTCTTAGCTTGAGTTTCAGTGCCCAACCTA ATCTCTCTTTTTTTGGGTCCACCCTAGCTAGTGAATTGAGTGTAGTTTTGGGAGGGGCCCATGACTCTAGCCATGTGTGT GTATTTTTCCATTCATTTTTGTTTGATACTGATTCTCAATCCAATGTGATGCACCAAGATAGATTTTCTTAGATATGAAT GTGTAAGTGCTGTTTTAACTGATGTGTTGTGGTAAATTCTGAATGTAGTGGATGTGCTGGTTATTGGGCTTGCAAACCTA GTGGCAGATGCAATATCAATGGGGTTTGGAGACTATGTGTCTGCTAGTTCTGAGCAGGATGTGATCAATGAGGAAAGGAA AGTGACAAAATGGGATGTCTTGTATCAAAGGGACAAAGAACTGAGTGAGTTGGTCACACACTATGAAGCTCTTGGGATGG ACCACAATGATGCAACCATGGTAATATGGTATACATGTGGAAAATTTACCATTTAGATGTGATTGAGAGATATTTTTAGC AAGATTTCTTAAAATCTTCATTTTGTTTCAAATCATTATCAAGCTGTTAAATTGCGGCTGCAATGTAAAGGGATTTTCAG TCCCGGCAACAGCGTCACGACCACAATTGCACCAATTTCAATCTGCATTTATATGCAATTTTCCAGCCGCAACTGCAATT TAAAACTTGATAATTACATATTTGGCTTTCATAGGTAGTTCGTTCTAAAATCTAAATTGACTGAATTTGGTTAACTGGTA AAAGGTTGTGAACATATTTGCAAAATATAATGGCATCCTGGTGGACGAGAGAATGGTGACTGACAGAGGAATGCTGCCAG CTGACCAAGAAGTGAAGCCCTGGAAGAATGGCCTAGTCACATTTGCATCCTTCATGATCTTTGGCTCAGCTCCATTGCTC TCTTTCATCATCCTCATACCTTTCACGGATAGTGAATCTGTGAAGTATGTTTGTGCTTGCCTTGTTTCTGCACTTGCACT GGCTCTTCTTGGGATGGCAAAGGCAAGGATTGCAGGTCAAAACATCATGTTCTCCATGGCAATCACTCTTTTCAGTGGTG GTGTAGCTGCAGCTGCTGCTTATTTAGTAGGGTGGGTGCTAAAGCATGTTGCAGGACTAGAAGGTTGATAAGCTAGAGCT AGGCTGAATTAGAAGCAGGATAGACAATAGAGAATTATTGGCATGCTTTTTAAACAGTTGTTTTGGTAATGAAAGGTGTA GGCCAAACCAGCCCAGTTAGAACTCCAAATTTTGGTATATATATGTACAAAAACTATCTTCTGGGCAGGTTATAAACGCA CTTAATATCATAACTGTTGCTTATCAGTTTTGTGATGATGGTTGGAG
CDS sequence (LotjaGi1g1v0469900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAGTGAAAACACCGTAGCAAAGTCATTAATCTTGCCACAACTTACCATTACCACAAGAAATAGTAATAAAAAAAT AATGGGTGAGAGAGGTGGTAGCAGCGGTGGCGCCACCACAGGACTCCTCCAGGAGGTGGTGGAGGAGGGTGATGAATGTG GTGGTGACTTAGAAAGGAACAGGACTGAAAGACCAAAAGAACCTTGGAGAGGAGAATATGTGAAGAGCATAGTGTATGGT GGGCTTGATGCCATTATTACTTGTTTTTCTCTCATTTCTTCCATCTCAGCTAGCAGTAATTCATCTGTGGATGTGCTGGT TATTGGGCTTGCAAACCTAGTGGCAGATGCAATATCAATGGGGTTTGGAGACTATGTGTCTGCTAGTTCTGAGCAGGATG TGATCAATGAGGAAAGGAAAGTGACAAAATGGGATGTCTTGTATCAAAGGGACAAAGAACTGAGTGAGTTGGTCACACAC TATGAAGCTCTTGGGATGGACCACAATGATGCAACCATGGTTGTGAACATATTTGCAAAATATAATGGCATCCTGGTGGA CGAGAGAATGGTGACTGACAGAGGAATGCTGCCAGCTGACCAAGAAGTGAAGCCCTGGAAGAATGGCCTAGTCACATTTG CATCCTTCATGATCTTTGGCTCAGCTCCATTGCTCTCTTTCATCATCCTCATACCTTTCACGGATAGTGAATCTGTGAAG TATGTTTGTGCTTGCCTTGTTTCTGCACTTGCACTGGCTCTTCTTGGGATGGCAAAGGCAAGGATTGCAGGTCAAAACAT CATGTTCTCCATGGCAATCACTCTTTTCAGTGGTGGTGTAGCTGCAGCTGCTGCTTATTTAGTAGGGTGGGTGCTAAAGC ATGTTGCAGGACTAGAAGGTTGA
Protein sequence (LotjaGi1g1v0469900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSENTVAKSLILPQLTITTRNSNKKIMGERGGSSGGATTGLLQEVVEEGDECGGDLERNRTERPKEPWRGEYVKSIVYG GLDAIITCFSLISSISASSNSSVDVLVIGLANLVADAISMGFGDYVSASSEQDVINEERKVTKWDVLYQRDKELSELVTH YEALGMDHNDATMVVNIFAKYNGILVDERMVTDRGMLPADQEVKPWKNGLVTFASFMIFGSAPLLSFIILIPFTDSESVK YVCACLVSALALALLGMAKARIAGQNIMFSMAITLFSGGVAAAAAYLVGWVLKHVAGLEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 209 | 209 | - | – | |
| PANTHER | 47 | 295 | 249 | 4.4E-92 | ||
| PANTHER | 47 | 295 | 249 | 4.4E-92 | – | |
| Pfam | 75 | 289 | 215 | 2.6E-50 | ||
| TMHMM | 209 | 231 | 23 | - | – | |
| Phobius | 210 | 233 | 24 | - | – | |
| Phobius | 234 | 238 | 5 | - | – | |
| Phobius | 239 | 257 | 19 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 258 | 268 | 11 | - | – | |
| Phobius | 269 | 292 | 24 | - | – | |
| TMHMM | 270 | 292 | 23 | - | – | |
| Phobius | 293 | 300 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion transmembrane transporter activity | Enables the transfer of manganese (Mn) ions from one side of a membrane to the other. | ||
| Biological process | Cellular manganese ion homeostasis | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. |
Expression pattern of LotjaGi1g1v0469900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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