Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0470000 |
| Transcript ID | LotjaGi1g1v0470000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SET domain protein; TAIR: AT1G01920.2 SET domain-containing protein; Swiss-Prot: sp|Q43088|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; TrEMBL-Plants: tr|G7L2K0|G7L2K0_MEDTR SET domain protein; Found in the gene: LotjaGi1g1v0470000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98045073..98052610) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAAACCCAGAAGCAAAGCTCGAAACTTTCATGCAGTGGCTGCAGGTTCGTTATCTTCATTTCTAATTTACGGCCCA AAAGCTAAACATTTCAAACATTTCGTGTTCTTGTTTTTCATTTTGCTTTGAATTTCGATTTGTTATTGATTTCAGACAAA TGGGGTGGAGCTACGAGGTTGCAAGATCAAGTACTGTGATTCCAGAAAAGGGTTTGGCATCTTTTCTGATAATGATGTTT CTGATGGTAATATCAATATGAAAATGGAGTTATTGCTTGATAGCATGTAACATTGTTTTTTGCTGTTTTGAACTGGAAAG TATGTAGCTTTATGCAATTTATGTTACTGCATTTTTGTTGTGCAATCTTGGAATTGTGAAAAATCATCCCTTTGAATCAA AAAATTGAGATGTTATGTTTTTGCTTTTTCCAATACAAATCCTTGAAAACGGAAACAAAGTGAAAATAAGGTGGAAATTT TGTAACTAAGTGCTTATATCTCAAATACATTTTTGATTTTACCCTGAATGCTTGTGCCTTATAGCTCTGTAGACCTGTAT GTTGACTTTTGGAAACAGATGAAACCATTTTCATTTTTCTGAATGATAGGGGTTCTGGTGGTTGTTCCACTAGACTTAGC AATTACTCCGATGAGGGTGTTGCAAGACCCTCTTTTAGGACCAGAGTGTAGGGCAATGTTTGAAGAAGGAGATGTAGATG ACAGGTTATTAATGATGCTGTTGCTGACTGTGGAGCGTTTGCGTAAGAATTCTCCATGGAAGCCGTATGTATAGTTGTTT GTGTAACTTGTGTTATACTTTATAATTCAGATTATATTTTGAGTTTCACTTTTGGAGTGGTTAAAATTTGAATAGGTACC TTGCTATGCTTCCAACCACTTTTCAAAATACACTTTGGTTTAGTGATGATGAACTTCAAGAGCTAAGAGGAACCACATTA TATCGTGCAACTGAATTACAGGTAATTTATCATGGGACTTGGCTTTTTATACCATAAATCAATTTGATTTAAACTGTTTT TGAGTAATAATAGTCAATATGAATTAGTTGTCTGCAGTATATTTTGGGCAATTGCTTGAATGAGAGCATGCACTAGATAC GAAATGAAAATTACATATAAGCCAAACCTAGTTTTTTTAATATGATCACCAATAAGTATTAGAGATATATTTCCTTTTTG GCTGATTCGACCTGTGAGGTGAATCTGTTTAGTTTGTTTAATAAGGTCTGAGATAGAATTACATGTCAACTATGCTATTT TCTTCAGTCATCTTAACTTATAGTTTATTTCATAACTGTTTTGTCTTGCAGAAGAAAAGCCTGCTGTCATTGTATGAAAC TAAAGTGAAGGATGTAGTCAAGAAGCTTTTGGCTCTTGATGGAGATTCAGAGATGTATGTATGGAGTAAAATTGTCTTTT TACTGAGTTGTTTATTTTTTGTAGTGGTATATTCGTGGTTGACAAGTCTTGACACCTGTTGAAATCTTGACATCTTGTAG TTTTGAGTTAGTTAATGTCAGTTATATGTCGATGATATTTATTTTGTTTCGGGATTGAGAACTACAGTTTTGAAAGTATA ATCTACTAGTTACCAGTTTACTGCTTCACCTTATATGGAAATATGAAACCAGTATACAATTAACAACAAAATGTGGATGT GCTACACTATGTTAAATGTGCACCTACTTGTCTTCATAAATCATGTTCAAGATGTTTTACTTTTACTCAGATGTGAGTCA TCTGATTTAGAATGAGATGTGAACCATAGGATTCATGCAACATGGGTAAACTAAAGGAATGCTTGGGGTGTAATTTGTAA TGAAAAGTATGACTTAAGCTTGTAGAATTTTTTTGCTACACAACTATAAGACCAGACCTGTAGAAGAACCAGTAAGGAGC GTAAGGGAGATGGCGAATAACTGAGTAGTTAGAGATTGAGAGAGACCAAGAAAAAAAGTCAGGCAAACCATTAAGAAAGG TTTGGATATAAATGGTTTGTTTCTACACATGATTCATGATAGGATGTTATGTTATCATTTGATTCATGTAGCCAACCCCT TGTTATGCTTGTGTGTCATTTGGTCATTGAAGTGCTATGATAATTGATGTGTCTTTCTGAAGAATGCTAAGATATAGTCC ATTTCATGTTAGAAAAATGCATAGGTTATAGGATCACATTCAGGTTACTTTCTTTTCATTTGGTTATAGTCTTATGTTGT AAGTACAAGATTGTTGAATTTGAAATGTATTTTATACAATGTAATTTACACCCTTACATTTCTGTTTACCCTAAATTTAT TAGCAATAAATATGACTTATTTCTTCATTGGATGAATTGAAATGTACTCTCTAGATTTTACTTTCAAACAGCCATTTCTT TGCTAAACTTTAGACATTTACATTTCATCTTTTCTGTCTGACCTTTTTTTTTCTTTTTCAGTGAGTCGTGCTTTGAAGAT TTCCTTTGGTATGTACTTCTAGTGAACTTTTATATGACTTAAACTAAGTCCTTGGAGGTTGATAGCAGACTTGCCTTGAT GCTAGGGCAAATTCAGTATTTTGGAGCCGGGCTTTGAACCTCCCTTTGCCTCGTTCTTATGTATTTCCAGAAATGCAAGA AGTTCAAGAGAGTTGCATTCTAGAAGCTGATGAAAAAAGTAACTTCATCTCTTTTTTCCTATCTAAGTAGTTTCCTATAA GAATTTTCTCTTCCTTGTGTGTCTAATTGAGAGGTGAGGTCATCATTTAAAATTTTTCTGAGTTTAAGAGTTAAAAGTAA TATTAAAATAGGGAAGTGTTTTTTTTCAGTAAGCCAGGATAAAAAACAGGACAATCTAACCAAGGAAATTACATGTAACA CAGTGCAAGGAGACACTGTATGGGTTGAAGGTCTTGTCCCTGGCATTGACTTCTGCAACCATGGTAACTTGTTGCTTGAC ATTCACTTTGCTATTTTTTTAAGTACTTTCCTTTTCCTTTATTCATTTATTGGGATCTGGTTGTTTCCCCGTTAGTTGTT GTTTGATATGAAACTCAGTCTAAGTGCTTCACCTAATAAAATTTAGTCAAATAATTTCTTGACATGGTAGCAAAGTCTCG ATGATCAAGTGACCAATATTTCAGCTTTCCCCTTTCTGATAAAATTTGGTACAAACTACAAAGCAATTGTTGCACTTCAA ACCCCAACGAGTGAAGAACTGTTGTGTGGGAGGGAATAATATATATCTTGAACATTTCTGTAAATTTATTGATAGGGGAT ATATTACCTTTATGATATGCCAGTTGCTGTTTGTCTTGACTCTCGTGATGTTAAAGGGGTATTCTCTTTTGCATAATAAC ACTTATCAAAGTGGTATTCTTTTGTTTTCATAGTGACAGTGCCATGTGGTACTGCTGTACTGGTATCATATATAAACTAA GTCATAAATCCAGATGCAAGGTTCACAAGTGATAGGAAATATCTATTATTGCTTTGAGAAATGAAAAGTTAATGAACTAT TTATATGCATATTAATGTGTGCTTGGCTTAGTTCCAGGGTGAGTTTTGGCTTATATGGTAGATATATCAAATACCTCATG CTAATATAGTAATTTACCTTAATTACATGGCCAATCAGATCTGAAGCCAAAAGCGACATGGGAAGTTGATGGAACTGGTT TAACAACAGGAGTTCCTTTCTCCATGTATCTCATTTCCGGTAACATTCTTTTCGTGGCTTTTCAGTGTCCTTGTTAACGA CCAATAAAGTTATTTCCTTTTATGTACCTCTGCAGTTCTAATAGTTACTGTCATATCTCTAACATAATTTCCTTTTATTT TTCTCTTTCATTTAAGCATTTTTGTAATATTGTATGTCGTAAAACTATTCCTGTCTAATTAATATTTTTTTTATTGCAAA GCTGCTCAAAGTCCCTTGCAGACTGATCAAGAAATTTCCATTAGTTATGGCACCAAGGGAAATGAGGTACTTTATATTGT GTTATGATTGGAAAGAAAATGAAAAAATATAACCAAATTCCTTTATTCTTTTATACTCTAGAGTTTACTTTTCTCCCTCT TCTTTATCAAGCACTAATCTTTTTATGTGCATGCAGACACATGGGGGAAATAAGGTTTGTCATAGGAATTTTTCATGTGG CTAATACTGGTGCAATGTTTTGTTGGCAGTTTATTCAATATGAGTATATGACTAAAAGAAGGTTTAATAACCATATACAT AACTATTGTTCGATAAATGCAAATCTAGACATTGCACCATTGACTTGGCCTTTTGGCTTAGTTGAGTTTCTCATGAACCA ACTATCCAAAAAGTTGAAGTTGTTGGGTGAAGACACCTTATTGGTTTTATATTATATTTCTAACATGTTCCTTCATGCAA GAGCCCATTGGCCTTAATTTGGTGGACGGCCATGGTACAAGCTTCATAACCAAGGCCAATTGTCTCTTGCGTAGACAATG CACGCCTTTTTATTAAAATAATAGAGTCAACAAAGATTGAACTCTAGAACACTTAGTCATAGAGCCTCCAATGTCATGTC ATGAACCAACTATCCCAAAAACCTAAGTTGTTGGTTGAAGAGTGAACTGAAGACACATAAATGATTTTATATTTTATTCC TAACAGAGTTCACATCTACCATTATGAAACATTTAAAGTTTTGAATATATACTTTCATATATATATTTACTAAATGTGAG TAAAAGTCAGTAAATGGAGCTTCTATTCTGTTGAAGGCTATTTGAATCTTATTTCAAGTACTACATGGTTTCCATATTTT TCAACTTGATGCAGGAACTTCTATATCTGTACGGTTTTGTCATTGATGGTAACACAGATGACTATCTCATGGTAATGACT TACTCTTGTATTCAGTTTCTACTTTATTGAAGATTTATGTTGTTTATCACTTGATCTTTAGAACTATGCCCCCAATGTTT GTTGCTATTTGGCAGCTTTCATTTACCAGAAGTCTTACTAAAAATCTTTAATATTAATAATATCCAACTGTTCTTTATCC ATTTCCTTGCAATAGTAGTACAATTAGTTTTGGTTTGCAACTACAGTAGCATTTCATACTTTGACCATACTTTCTTAATT TTGCCCATGGCTGCTGCCATTTTGCTTCAGTTACTGTCTCTATATCATGGGCTGTTTAGCACGGTTCATACAGTTATAGA CATGGCTTACTAATCCGTGTTGTTGGGCTGTTCAGGTCCACTATCCAACAGAAGCAATTAGTACTATTTCTTTTTCAGAA GCCAAAAGCCAGCTTCTTGAAGTGCAGGTATGGTAATAATATATGTTAACCTTTAAGCCATTTTTTTAAGAAGTAGAATA TGATTTATCTCTCCAACTTTGTACTACCTATTTTCTAAAATTCCCCCCTTGTGTAACTTCACTTTATTTTTGTGTTTACA GAATGCTGAAATGAGATGTCTTTTACCCAAAGCTTTGCTGGAGCATGGATTTTTTCCATTAGGCACACGAAACAGTGGAG AAAATAACAAGTCCAACCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAAATGCCATCTTATGTAAACAAGCTGGTT TTTCCTGAGAAGTTTATAGCCACCTTGAGGACCATAGCCATGCAAGAAGATGAGCTTTTCAAGGTTTCCTCAATGCTGGA AGAGGTAAAGTTTCTATGCAGCATTTTATTTTTCATATTTCCCTTGGATGTCAGACTTAGCTCCTGCCCTGACTATTGAA ACTGTGTTTTCTTTTGCTTTGGTAAATTTTCTATCAAGATTTGCCACATTTCCTACCCTTTGCATCGCTTAACTAGGACA AGTGATGTGACTCTGCTACTTGATATGTAGTTCCATGCTTCATGGGGACAGCATCTGGGAATTGTATGATACATTTATGA TTTATCTTTTATAGGCAAAACAGACCTTACCTCTTTTACATTGGAATTTCCCAATACTTGGAAGAAATTAATAATTCAAA CATAAAAGAATAAATGGAACCACTAATTGTAAATTGGTGCTGAACATAGTACAACAACAAAAGCTTTATTCAACTAAGTG AGGTCGGCTATATAGTAAATTGGTGCTGAACATAGTACATGATTTTTACAATGCATATAAGGTCATTTACATTTCTTTCC TTTAATTTCCTTTGATTGCTGGCCGATTTTAAGCTGGGATAAAATGAAGTTAATTTATTACATCTAGCCAAGACCAATAG AAAAGTACTAAGCATTATATTAATTTGAATTTTTTATTTTCAATTTCCTCTGATTTCAAACTTCATAAAAATTTTATGCT TTCTATTAAGCTTGCTGGACCTGAAAGGGAGAGACAACCGTCTGATACAGATGTCCAATCAGCAATATGGGAGGTGTGCG GCGATTCCGGAGCCTTACAATTGCTTGTTGATCTTCTTCATGTAAAGTGAGTCCCAGGAATTACACAGACACCATAATTG TGGATAGGATCATGTTAATCACAACCTGAAATATTTTTAGTACTTTACTCAAGTGCATGCATTGCAACTTTTTTCCTGGA AATGATGTTAAATTTTTTCTTTTTTATCTCCAATGTGCCATTTCATTTATGGAGCAAATAAGGACACATACTAGAACACC AACATTGATATATCTTATGTACAATGCCTAATTAACTTCACTCCATTCAAGGTTGATGGATCTTGAAGAGAGTTCTGGAA CAGAAGAAAGTGACCATGATTTACTCAAGAAAGCCCTTATTATTGATAGCCAGGATGATAGCAAACAGTGCACGAGCAAT TTAAGGTAAAAACTTGTGTACTTGATCTCAGTAATCATAATCATATACCTTAGATTATTGGAGACCGCTCTGGTACTTAT CTTTTATCAAGCGTACTGGTACTTGATTTACAACTTATGGTGACACTGCTAAATCTTCTTTTATGAATCAAATCACTTTT GAAATCCATGCTTTTATAATTCTTCCATGTTTAACATTTTTGGTTGCATACAAGTCTAGGATTGTTGAGTGTGAACTGTG AAGTGAGTGTGTATCTTACCCCTCCCTGGATTTAAGATGCTAAACTCCTGTGATTCATAATTTTCTTAGTCTGACAGTGT ACCATCTTTCTATTATAAATGTCAAATTGTGAAGTGTTTGTTGATTGAAAAGATTTGCAAAGTATCTAAAATTATCTCAT CAGCCAAAGAAAGCTTGCATTCCTCACCTGATTTATAATTTTCCTACTGATTTTTTTTGTCTTTCAGACCTAGCACAATA ATGTCAGATGATCCATATAGCCAACTTCACTTAGTTGGATAAGGATTTTGTTGTATTCTTTGTCTTTCTAATAGTTATTT TCCACAAAATTTCAGCACATTTGCAAATGACTCAGAAGAATCAAAGTTGATGATGACTAGAAACAAATGGTCAGCTATAG TGTACCGGCAAGGCCAGAAGGAGCTAACTCGATTATTCTTGAAAGAAGCAGAACATGCTCTGGAGTTATCACAAAACGAA GAGGTGAATGCTCCTTGA
CDS sequence (LotjaGi1g1v0470000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACCCAGAAGCAAAGCTCGAAACTTTCATGCAGTGGCTGCAGACAAATGGGGTGGAGCTACGAGGTTGCAAGAT CAAGTACTGTGATTCCAGAAAAGGGTTTGGCATCTTTTCTGATAATGATGTTTCTGATGGGGTTCTGGTGGTTGTTCCAC TAGACTTAGCAATTACTCCGATGAGGGTGTTGCAAGACCCTCTTTTAGGACCAGAGTGTAGGGCAATGTTTGAAGAAGGA GATGTAGATGACAGGTTATTAATGATGCTGTTGCTGACTGTGGAGCGTTTGCGTAAGAATTCTCCATGGAAGCCGTACCT TGCTATGCTTCCAACCACTTTTCAAAATACACTTTGGTTTAGTGATGATGAACTTCAAGAGCTAAGAGGAACCACATTAT ATCGTGCAACTGAATTACAGAAGAAAAGCCTGCTGTCATTGTATGAAACTAAAGTGAAGGATGTAGTCAAGAAGCTTTTG GCTCTTGATGGAGATTCAGAGATTGAGTCGTGCTTTGAAGATTTCCTTTGGGCAAATTCAGTATTTTGGAGCCGGGCTTT GAACCTCCCTTTGCCTCGTTCTTATGTATTTCCAGAAATGCAAGAAGTTCAAGAGAGTTGCATTCTAGAAGCTGATGAAA AAATAAGCCAGGATAAAAAACAGGACAATCTAACCAAGGAAATTACATGTAACACAGTGCAAGGAGACACTGTATGGGTT GAAGGTCTTGTCCCTGGCATTGACTTCTGCAACCATGATCTGAAGCCAAAAGCGACATGGGAAGTTGATGGAACTGGTTT AACAACAGGAGTTCCTTTCTCCATGTATCTCATTTCCGCTGCTCAAAGTCCCTTGCAGACTGATCAAGAAATTTCCATTA GTTATGGCACCAAGGGAAATGAGGAACTTCTATATCTGTACGGTTTTGTCATTGATGGTAACACAGATGACTATCTCATG GTCCACTATCCAACAGAAGCAATTAGTACTATTTCTTTTTCAGAAGCCAAAAGCCAGCTTCTTGAAGTGCAGAATGCTGA AATGAGATGTCTTTTACCCAAAGCTTTGCTGGAGCATGGATTTTTTCCATTAGGCACACGAAACAGTGGAGAAAATAACA AGTCCAACCAAGTTTGCAACTATAGTTGGAGTGGTCAGCGCAAAATGCCATCTTATGTAAACAAGCTGGTTTTTCCTGAG AAGTTTATAGCCACCTTGAGGACCATAGCCATGCAAGAAGATGAGCTTTTCAAGGTTTCCTCAATGCTGGAAGAGCTTGC TGGACCTGAAAGGGAGAGACAACCGTCTGATACAGATGTCCAATCAGCAATATGGGAGGTGTGCGGCGATTCCGGAGCCT TACAATTGCTTGTTGATCTTCTTCATGTAAAGTTGATGGATCTTGAAGAGAGTTCTGGAACAGAAGAAAGTGACCATGAT TTACTCAAGAAAGCCCTTATTATTGATAGCCAGGATGATAGCAAACAGTCACATTTGCAAATGACTCAGAAGAATCAAAG TTGA
Protein sequence (LotjaGi1g1v0470000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENPEAKLETFMQWLQTNGVELRGCKIKYCDSRKGFGIFSDNDVSDGVLVVVPLDLAITPMRVLQDPLLGPECRAMFEEG DVDDRLLMMLLLTVERLRKNSPWKPYLAMLPTTFQNTLWFSDDELQELRGTTLYRATELQKKSLLSLYETKVKDVVKKLL ALDGDSEIESCFEDFLWANSVFWSRALNLPLPRSYVFPEMQEVQESCILEADEKISQDKKQDNLTKEITCNTVQGDTVWV EGLVPGIDFCNHDLKPKATWEVDGTGLTTGVPFSMYLISAAQSPLQTDQEISISYGTKGNEELLYLYGFVIDGNTDDYLM VHYPTEAISTISFSEAKSQLLEVQNAEMRCLLPKALLEHGFFPLGTRNSGENNKSNQVCNYSWSGQRKMPSYVNKLVFPE KFIATLRTIAMQEDELFKVSSMLEELAGPERERQPSDTDVQSAIWEVCGDSGALQLLVDLLHVKLMDLEESSGTEESDHD LLKKALIIDSQDDSKQSHLQMTQKNQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 497 | 494 | 3.3E-231 | – | |
| PANTHER | 4 | 497 | 494 | 3.3E-231 | – | |
| Gene3D | 5 | 310 | 306 | 3.6E-54 | – | |
| SUPERFAMILY | 7 | 314 | 308 | 6.7E-50 | – | |
| ProSiteProfiles | 25 | 296 | 272 | 8.784 | ||
| Pfam | 35 | 296 | 262 | 3.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0470000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…