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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0470200 |
| Transcript ID | LotjaGi1g1v0470200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A0R0JBR7|A0A0R0JBR7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0470200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98067042..98069642) extracted from Lotus japonicus Gifu genome v1.2.
CATTGATACTACATGATGGATTCCCAAAATCTGAACACCTTCCTCTTGTCTCAAGCGTGCAGCAAACAGCTCAATGCAGC GACGCCGACGACGGAGGAGGAGCACGGCGGAAAATCCCTCTCTCTCTTCCATTCTCCCCGACGAGTTGGTTGAAGCAATT TTACTGAGACTACCGGTGAGTTCTCTTCTCCGATTCAAATGCGTCTCCAAATTGTGGTTATCTCTAATTTCCAATCCCCA ATTTGCGAAATCCCAATTTGACCTAGCTGCTTCACCCACCCACCGTCTCCTCCTCAATTGCACTGACGATTCCCAAATCC AATCCCTAGACATTGAATCATCACCACCCAACGATGATGAATCTGCAGCAGTGCTCAATTACACCTATGTTAACATGTTT TATCGCTTCATCACTAGTCTTGAGGTTCTGGGTTCTTGCAGAGGGTTTCTGCTTTTCCTTTTACCCAATTTTCCACCTGA TTACATTGTGTGTAATCCAGCAACGGGTGTTCAAAGACGAATTCGATCGACCCGTTTTCGTTATTCTAATTATCTGTATG GTATTGGGTATGATGAATCAACTGATGATTACTTGTTAGTTGCTATAACATCGTGTCATTTTTGGCCTACAATTGAGCTT TTTTCTTTGAGAACCAATGTACCCTTCTCGCTGAGACTGAAAGGTAAATATAGGTATATCAATCTCAAATTTGATTGTAG AAGTGGTTTGTTCTTAAATGGGTCTCTTCATTGGTTGGTTACCGTTACGTCTAGTGATACGAATCCTCGTGTACTCCTTG CTTTTGATTTGGTTAGCAAGAGTTTATCGGAGATTGCTCTATCACCTGGTTTAGCTCTGGAGTTGAATAAAGGTTCATAT TGTTTAAGAGAGATGAGAGGATGTGTTGGTCTGTGTTACTCTGGTTATGGTGAAATGGCTGAAATATGGATAATGAAAGA GTACAAAGTGCAATCATCTTGGACTAAGATTGTTTTGTCTTATGACATTCTTAGCGCACCCCGCTTTTTTCCAATATGTT TCACCAAATGTGGTGATGTTTTTGGATCAAATGTGGATGGAAGATTATTGAGACTCAACAATGAAGGAAAGACGATTGCA TTCTGGCCACCGGGGGAGAGCAAATATCGTTCATTATATAGTTGTATGTATACAGCGAGTTTACTGTCACTCCCTAGTTA ATCTGAGGACCAACAAATACAGACATGACTAGTTAATTTGAGGACACCAACAAATACAGACATGAAGTATCAATGTATGT AATTCTCCAATCCTTTTCACCATTTTAGTACTATTACTATTTACTGCCGAATGCATGCTTACATGAAAATGATTCTGGAT TTACTGAATTCACTGTTGGATACTGCATAGGGAAAATATTTTGTCTTGCTTGCTCAGAATAATGAAAGGCAATTTCAGTG GAAAATTATGTTAGAGAAACAACTACGATCCAGAGTTAAATAACAGTTCTCAGACTAAAGTCACTAAACTCTTATACAAT GTATAGTTTGGTGATATTTACAATAAGCTCATTTTTCTTGCAGGCTTGAAGCATGCAAGAATACTCAGTATAGTCAGGTC AATGTCCTAGCTTTCCTTCAAATGATCATACTACAAGAAGAAAACATTGTATTTCAAAGAGAATGTAAATTATATCATGT GAAATAGTCTTGTATGCCCGGTGTCTGTTGTAGTGGTGATTTTAGTAAGGTAGGAGTGTAGATAGACTTTAGAATTTAAT CATGTTCCGTAGTATGAAAGTTAGCAAATCCTGGTTGGAATTAGTACTTGATATTTTGTTTCTTTATGTATTTCCCCTCT TAATATTGTTCTTGTGTTAGCAGTTTTTCCCCTTACTGGCTTTTAATATACTGGTTTTTTATCTTATGTTCTGCACATTT ATCAGTTCACTATATGATTTATTGTTTTTGTGTGTAAACAGAAAATGCCATAATTGAGTGTACAGATGAAACATGTTTAC AGGCATGCATAATGCATCATATGATACTATCTCTAAGTTAGGCATCACATCATGTGTAATTTGTAGTAAAAAACCAGACA CATGCTGAATATAAACTATCTGTTTTAAAGTCCCACACTGAAAATAAACTCACCAATGTTATGTTTCATCAAATGAATAT ATCTTTCACAGTTTTTTGCTTTTTCAGAGATACAAATGGATTGAAATTTTAAGCTCTTTCTGGTAGGCATCTTCCTGAGT ATTGATTTCAGCTCTCAGCTTTAAAATTCTGTTCAAATATCATGCGATTGAACCTTTTGATATCACACTGTAGCTTGTAT ACTTCCTTTTTCTATTGTGTGCCTTCAAAATGCTTGGTTATTTTGTCACTCAAACTGACCCAGAATATTTGTCTGAGCCA CTTTTGGCTCAGAAGTTTGAAACTTAACAAACAGGACTAGCCCATGCTACCTTCTCAGCAAGTTGATTTTCTCATGGGTT AATTCTTTACTCAGTCTGGTTTACGAAACTATGTGCATGCATGGAATCCCTTATAAGGGAGAGAAGCAAGAACAATACCA AAAACTTGGTTCTTGAGTATTTTATGCATTACTCAGTAACA
CDS sequence (LotjaGi1g1v0470200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCGACGCCGACGACGGAGGAGGAGCACGGCGGAAAATCCCTCTCTCTCTTCCATTCTCCCCGACGAGTTGGTTGA AGCAATTTTACTGAGACTACCGGTGAGTTCTCTTCTCCGATTCAAATGCGTCTCCAAATTGTGGTTATCTCTAATTTCCA ATCCCCAATTTGCGAAATCCCAATTTGACCTAGCTGCTTCACCCACCCACCGTCTCCTCCTCAATTGCACTGACGATTCC CAAATCCAATCCCTAGACATTGAATCATCACCACCCAACGATGATGAATCTGCAGCAGTGCTCAATTACACCTATGTTAA CATGTTTTATCGCTTCATCACTAGTCTTGAGGTTCTGGGTTCTTGCAGAGGGTTTCTGCTTTTCCTTTTACCCAATTTTC CACCTGATTACATTGTGTGTAATCCAGCAACGGGTGTTCAAAGACGAATTCGATCGACCCGTTTTCGTTATTCTAATTAT CTGTATGGTATTGGGTATGATGAATCAACTGATGATTACTTGTTAGTTGCTATAACATCGTGTCATTTTTGGCCTACAAT TGAGCTTTTTTCTTTGAGAACCAATGTACCCTTCTCGCTGAGACTGAAAGGTAAATATAGGTATATCAATCTCAAATTTG ATTGTAGAAGTGGTTTGTTCTTAAATGGGTCTCTTCATTGGTTGGTTACCGTTACGTCTAGTGATACGAATCCTCGTGTA CTCCTTGCTTTTGATTTGGTTAGCAAGAGTTTATCGGAGATTGCTCTATCACCTGGTTTAGCTCTGGAGTTGAATAAAGG TTCATATTGTTTAAGAGAGATGAGAGGATGTGTTGGTCTGTGTTACTCTGGTTATGGTGAAATGGCTGAAATATGGATAA TGAAAGAGTACAAAGTGCAATCATCTTGGACTAAGATTGTTTTGTCTTATGACATTCTTAGCGCACCCCGCTTTTTTCCA ATATGTTTCACCAAATGTGGTGATGTTTTTGGATCAAATGTGGATGGAAGATTATTGAGACTCAACAATGAAGGAAAGAC GATTGCATTCTGGCCACCGGGGGAGAGCAAATATCGTTCATTATATAGTTGTATGTATACAGCGAGTTTACTGTCACTCC CTAGTTAA
Protein sequence (LotjaGi1g1v0470200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRRRRRRRSTAENPSLSSILPDELVEAILLRLPVSSLLRFKCVSKLWLSLISNPQFAKSQFDLAASPTHRLLLNCTDDS QIQSLDIESSPPNDDESAAVLNYTYVNMFYRFITSLEVLGSCRGFLLFLLPNFPPDYIVCNPATGVQRRIRSTRFRYSNY LYGIGYDESTDDYLLVAITSCHFWPTIELFSLRTNVPFSLRLKGKYRYINLKFDCRSGLFLNGSLHWLVTVTSSDTNPRV LLAFDLVSKSLSEIALSPGLALELNKGSYCLREMRGCVGLCYSGYGEMAEIWIMKEYKVQSSWTKIVLSYDILSAPRFFP ICFTKCGDVFGSNVDGRLLRLNNEGKTIAFWPPGESKYRSLYSCMYTASLLSLPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 96 | 91 | 1.2E-7 | – | |
| SUPERFAMILY | 13 | 82 | 70 | 1.02E-13 | ||
| ProSiteProfiles | 15 | 61 | 47 | 9.206 | ||
| PANTHER | 18 | 368 | 351 | 1.9E-68 | – | |
| PANTHER | 18 | 368 | 351 | 1.9E-68 | – | |
| Pfam | 19 | 56 | 38 | 3.1E-8 | ||
| SMART | 21 | 61 | 41 | 2.2E-5 | ||
| TIGRFAM | 121 | 311 | 191 | 1.1E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0470200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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