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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0474300 |
Transcript ID | LotjaGi1g1v0474300.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ripening related protein family; TAIR: AT3G29030.1 expansin A5; Swiss-Prot: sp|Q6H5X0|RIP2_ORYSJ Putative ripening-related protein 2; TrEMBL-Plants: tr|K4AZI6|K4AZI6_SOLLC Uncharacterized protein; Found in the gene: LotjaGi1g1v0474300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98453321..98456813) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGAGTTTTTGCTCAAAGGCATCCTTTCTTTGTCTAATTTTGTTGGTTATCACAAACTGTGTGTTCTCTGAAGCACA AAAGTGTCGCCCAAGTGGTAGAATTAGAGGAAGGAAAGCCCCTCCTGGACAATGCAACAAAGAGAATGATTCTGATTGTT GTGTGCAAGGAAAAATGTACCCAACTTACAAGTGCTCTCCACTGGTGTCTACTAACACCAAGGCATATCTAACACTTAAT AGTTTCGAAGAGGGAGGAGATGGAGGTGGTCCTTCAGAATGTGATAACCAGTACCATTCTGATGACACACCAGTGGTTGC ACTTTCCACAGGATGGTTCAATGACAGAAGTAGGTGCCTCAACAACATTACCATCAGCGCCAATGGAAGAAGTGTGGTGG CAATGGTGGTTGATGAGTGTGACTCCACAGAGGGATGTGATGAAGATCATGATTACCAGCCTCCTTGTCCCAACAACATT GTTGATGCCTCCAAGGCTGTGTGGGAAGCCTTGGGTGTGCCCCAAGATCAATGGGGTGGCCTAGACATTACATGGTCTGA TGCTTGAAATTGTTGAAGTATTGTAGATATGAATATTGTTTGGGATTATGTATCTATGTTCAGTATTAGGTGAATTTTCA CTTTGTGCTTCGTGTATCTACACTGTTTATTCTATTGTAAAATACATATGAACATTTATGTTCTAATGTTTTTTGTTTGG TGAATTCTGTGGTACCTGCAATTTTTTTTGATGTGATACCCACATTAGGTGATTTAGTAGACTAATGACATGTTGTAATT GAATTTATAATTCTCAATGTTATAATTCTAGTCCTAATAGTACTCTCATTCATTGGGCAACTTAACTGTCACCCGACGAC CTTTGTTGACGTCCACCACGACTTTGTAGAGGTTGCAGTGAATCTCGACCTTAACATTGAGCCTGAGCGACATGATTTCG ATCAAGGGAGATGCTTAACACCTATCTAATCGACACCATTAATCTTAAGGCACAATATTGAGAAAATACAATCGCTAACT CATGTGATACATGAGTCTTTATTACTATGTTAAGTTATTTAGGGTACCATACCTTGACCTGAAGTAAGGTACCACAACAA GCACCTTTTTGTTTATATAGCTCAATCCTAATTTAATACCTTCAAACACGCTGAATTTTCCCTTATATAGATGATCATGG CTTAGAAACTATTGTAGCAAAATAGGATTTTGAGGCGGAATTCATAATGGTTCATGAAAATAATCGGCTTAACTGCACTT TTTTCTCATTTATTACGATTGCGCAATTTGACTTCTCAGTGTTTACGAGTGAATTAGATCCCAAATTTTTTAGTTTGTGA AAAATGTGTCCTTCTGTCTGTTAGAAGAAGGTCTGTCTCTCATTAATAACGTTAATCTGACTATGTATGTCACTTGGATG TTTTGTCATGATTTTTCTAGAAAAATGCTCCATCCCCAATCTACTCTTCTCCTCCATTGCCCAATAAATCGATCTCCTCC ATCACTCTGGTTTGAACCTAGCAACGCCTCAACCTTCAATCTAATATTCGAGTCACCTTCAATTAGATCTCGACCACACC CACCAAGCCACCACCATTGAAACCCGTTTCTTAGACACTCCCTTCAATAGCAGACCATGCACATGCTTGGAGGTGGTGAA GGCGGCAAAGTTTAGATTTTGGGGGATAAAGAGGGAAAGAGGAAGGAGGAATGATACTTGAGTAATGAATTATTTGAGGA TCGATTTGTTGAGTTTGAAAGGGGAATGAAGGAGGAGGGAGAGGAGGAATCATAGCGTTTCGCCCGACCCTTTTCATGTG CTATTGAGTCTTCGGTCTTGAGAGAACCATCACAAAGAGGTTGCAGGCCGAAGAAGATGAAGAAGAACAAGCCTTAAGCA AAGCCTTCAATCTATAGGGGGTTTTAGTTAGTTTTAACTTTTTAATTAAATTTTTATTTGTAAACATATTATTATGATAT ATATTAAAGGGCTTTTTCTTGATTTATGTATATCATAAGTGACACATATTGTAAGATCCACGTTACTAATGAGCAAAGTG ATTTCCATTAATAATTGGACGTTCTTTTAAGGGGAGAATTCAATTTTCACAAATTAAAAATTCTGAGACAAAACTCGCTT ATTTTAATCATTGTGAAGTCAAATCTACAAACACAATAGAAGAGAGACTAAAAAGGCAAATTAAGCCAAAGTAATATTTG GCAATCTAAAATCACAAAGCGACAGAAAACACAGAAGAGAAAATGCGCACCATTCAGCAAAAAGAAAATTTTTAAGTAGA AGATACGGCCGGTAGAATTTGTACATGTATAAGAGGAACCGACATATTCAGGTTGATTGTGAACTCATCCTTTGTTTTTG TTTCCTGGTTGATGACAATTGCAACTTTGCTCTTATTATGTCTTTTAATCAGAATGTACTAGTACTAGTGTTCAAAATTC AGCATGAGTTATTGGTTTTTAGAAATAACAATCTCACTCCCCTATGTTTCAGGACATTGCCTCTGATGTTATTAAGAAAT GACAATTTTTAATAAGAAGACTCTCAAACAATTGAATAAAAAATTAAACAATCAGAATGTTGTATAATCAATTTCTAATG AAAAACCTCAGCATGTATTTAAAAAATCTTCCACTTTCCTTAACGGCTTAAAAAGCCATAAAGAAACAAACTAGAGGCTG TTCTAGTCATTGGCTAAACAAGGTAGTGTAAAACTTGTTCTTTGACCACAAAAACAATCATATAGTGTTGTTGACACCCT AATGTCATAACCAAGTGATATAATATAATTGGCCTAGAAATTAATCTCTATATATAGGCATTAGAATCCCAATCCAATCC ATCAAGCATTCAGGAGAAGCACAACCAAAAAGAAAACAGTGACAAGATGAAGAGTTCTTGCTCAAAGGTATCCTTTCTTT TTCTGATTTTGCTGGTTATCACAAATTGCATGTTCTCCGAAGCACAAAAGTGCCGGCCAAGTGGTAGAATCAGAGGAAAG AAAGCCCCTTCTGGACAATGCAACCAAGAGAATGATTCTGATTGTTGTGTGCAAGGAAAAATGTACACAACTTACAAGTG CTCTCCACCAGTGTCTACTAACACCAAGGCATATCTCACACTTAATAGTTTCCAAGGGGGAGGAGATGGAGGTGGTCCTT CAGAATGTGATAACAAGTACCATTCTGATGACACGCCAGTTGTTGCACTTTCTACAGGATGGTTCAACGACCGAAGCAGG TGCCTCAACAACATTACCATCAGTGCCAATGGAAGAAGTGTGGTGGCCATGGTGGTTGATGAGTGTGACTCCACAGAGGG ATGTGATGAAGATCATAATTACCAACCTCCATGTCCCAACAACATTGTTGATGCCTCCAAGGCTGTGTGGAAAGCCTTGG GTGTACCCATTAGTCAATGGGGTGGTTTGGATATTACATGGTCTGATGCTTGA
CDS sequence (LotjaGi1g1v0474300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGTTTTTGCTCAAAGGCATCCTTTCTTTGTCTAATTTTGTTGGTTATCACAAACTGTGTGTTCTCTGAAGCACA AAAGTGTCGCCCAAGTGGTAGAATTAGAGGAAGGAAAGCCCCTCCTGGACAATGCAACAAAGAGAATGATTCTGATTGTT GTGTGCAAGGAAAAATGTACCCAACTTACAAGTGCTCTCCACTGGTGTCTACTAACACCAAGGCATATCTAACACTTAAT AGTTTCGAAGAGGGAGGAGATGGAGGTGGTCCTTCAGAATGTGATAACCAGTACCATTCTGATGACACACCAGTGGTTGC ACTTTCCACAGGATGGTTCAATGACAGAAGTAGGTGCCTCAACAACATTACCATCAGCGCCAATGGAAGAAGTGTGGTGG CAATGGTGGTTGATGAGTGTGACTCCACAGAGGGATGTGATGAAGATCATGATTACCAGCCTCCTTGTCCCAACAACATT GTTGATGCCTCCAAGGCTGTGTGGGAAGCCTTGGGTGTGCCCCAAGATCAATGGGGTGGCCTAGACATTACATGGCCACA AAAGTGCCGGCCAAGTGGTAGAATCAGAGGAAAGAAAGCCCCTTCTGGACAATGCAACCAAGAGAATGATTCTGATTGTT GTGTGCAAGGAAAAATGTACACAACTTACAAGTGCTCTCCACCAGTGTCTACTAACACCAAGGCATATCTCACACTTAAT AGTTTCCAAGGGGGAGGAGATGGAGGTGGTCCTTCAGAATGTGATAACAAGTACCATTCTGATGACACGCCAGTTGTTGC ACTTTCTACAGGATGGTTCAACGACCGAAGCAGGTGCCTCAACAACATTACCATCAGTGCCAATGGAAGAAGTGTGGTGG CCATGGTGGTTGATGAGTGTGACTCCACAGAGGGATGTGATGAAGATCATAATTACCAACCTCCATGTCCCAACAACATT GTTGATGCCTCCAAGGCTGTGTGGAAAGCCTTGGGTGTACCCATTAGTCAATGGGGTGGTTTGGATATTACATGGTCTGA TGCTTGA
Protein sequence (LotjaGi1g1v0474300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSFCSKASFLCLILLVITNCVFSEAQKCRPSGRIRGRKAPPGQCNKENDSDCCVQGKMYPTYKCSPLVSTNTKAYLTLN SFEEGGDGGGPSECDNQYHSDDTPVVALSTGWFNDRSRCLNNITISANGRSVVAMVVDECDSTEGCDEDHDYQPPCPNNI VDASKAVWEALGVPQDQWGGLDITWPQKCRPSGRIRGKKAPSGQCNQENDSDCCVQGKMYTTYKCSPPVSTNTKAYLTLN SFQGGGDGGGPSECDNKYHSDDTPVVALSTGWFNDRSRCLNNITISANGRSVVAMVVDECDSTEGCDEDHNYQPPCPNNI VDASKAVWKALGVPISQWGGLDITWSDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
PANTHER | 1 | 186 | 186 | 1.0E-217 | ||
SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
Phobius | 1 | 7 | 7 | - | – | |
PANTHER | 1 | 186 | 186 | 1.0E-217 | – | |
SignalP_EUK | 1 | 26 | 26 | - | – | |
Phobius | 1 | 24 | 24 | - | – | |
Phobius | 8 | 19 | 12 | - | – | |
Phobius | 20 | 24 | 5 | - | – | |
Phobius | 25 | 348 | 324 | - | – | |
SUPERFAMILY | 71 | 187 | 117 | 7.67E-14 | ||
Gene3D | 77 | 188 | 112 | 1.0E-16 | ||
PANTHER | 186 | 348 | 163 | 1.0E-217 | – | |
PANTHER | 186 | 348 | 163 | 1.0E-217 | ||
SUPERFAMILY | 225 | 346 | 122 | 1.71E-13 | ||
Gene3D | 238 | 347 | 110 | 1.6E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0474300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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