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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0477400 |
| Transcript ID | LotjaGi1g1v0477400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Origin recognition complex subunit 5; TAIR: AT4G29910.1 origin recognition complex protein 5; Swiss-Prot: sp|Q6EWX0|ORC5_ARATH Origin of replication complex subunit 5; TrEMBL-Plants: tr|G7L4P5|G7L4P5_MEDTR Origin recognition complex subunit 5; Found in the gene: LotjaGi1g1v0477400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98922363..98927181) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTACATTAGTTTGGGTTAGGATTCACCGCATAAATCCCATTATCGACAAAGAATAGAAGAACCCTAAATCCCAAATT TTCGTTCCAAATTCGAATCCCTAATTCACCATCGAATCGATGCTTCGTTTCGTTTCACACTTCTTGCCATAGAGATCGAT GCTTCATTTCGTTTGCTTTGAAAAGGGTATCTGTTATAATTTCCTTTGATGTAGTGTTGCCTGCGTTCATCTTTGAAAGC TAAAATTCACAGCAAGGCCCTGTTTTATTTAGTCTTCTGGGTTTTTTGGTTGCTGGGACAAATGAAGAAATGATCGAGTT CATTGTTTCAGGATTTTGGGATTTTTCTGGAACTTGTAAACTTTTTTTTGTTGATATTTTTCTGGAATTTTGAAATTCTT TTGATTTGGTTCTACCACTTTTGCAGATTTTGAAATCTCCTTCTTCAAGAACAGCTCCCCCCTTCCCATTAATTTGGGCT CCTTCTCTCCCACTTCTCCTAAGGATTTGGGCTCTTTCGCTCTTCAATCACTGCTCCTCAGACTCACTTCACCTTGTTGG TAATGATTCTTTACTTGTTACTCCCCATTGGTTTCCATTTCTTTATCTCTGTTGTGGTTTTGTGACCATGTATGTTTATT TTGTCCAACGAGGTGGAAAATGGGGTCTCAAGCATTTGACTCTTAGGAATTGTTTGGTTGGAGGACAACGGAGGGGAGGG GAGGGGTTTTTAAAATCTAATTTTGTTTGGTTCAAACTTTAGGAGGGGAGTGGGGAAATGGAGGGGAGCAAAATCCCTCC AACCTCAATTTTTTGTTCCCCCAAAAGTGGGGGAATTAGGAAGGAAAATAATTTTCGGACAAAAATAACCCTACACAAAT CTAGAAATTCCAACTTTTAGTCCAAGGGTTTTAGGTGTATTTCCTTCCTTCTTCATATCAACCATTGCTGCCTCCGTCTC TGGTCTCTCTCTCCGCCGCCGGTGCCCCCTCACCGGTCTCTCACTCCGCTGTCGCCGCCGCTGGCCCCCCTCATCTGCAA CCCAAGTATGTGTTAGCCGCCCCTACTACAATTTCCGTTTCATTTGGTTGTTCCCTTGGCTGGCTGTATAGACTTTTTTT CTGCTGTGAAAGGAAGAAATCATAGTATAGGGTGATGCTATTTTTGCACAAGATTTTGGTTTTTTTGCAACTGATACCAC ATACACTGAGAAATCTTGTTGGTAGTTTGCTGTAAACTTTACTTATCTGTTGAATGAATTTTGGCATGTCTACAACACAA CAGGTATAAATTTCAATTTCTTTACTTGCACAGGGCTGTCCACATGAATAATTTTACATGTCTCTTCTCTTTTAAATTGG ACTACTGCCGTCTACTGGTCAATTTATTTGGGTGGGGTGAACTGTGATAATTTGCTCGGGGCATTGAGTACATAGTGAAA TTCAAGTCCTTTGATCACTTTGTAGCAATGTATTTGTGAACTTAATGGTGCATTTGCCTTCTCTTTTTTATTACTGTGCA AGGTCTGGAAAATTCTGGTTTGTGAGGTTGTGGTGAAGGCTTAAAATTATGCAGAATAATTTTTTCTGAAGAAGGATGTT ATATTGTGTTGTTAAATTCAAGTAAAATATGAAAGGGTATAAAAATAATTTTAATTATTAAATCTCTTCCCTCCCCTCCT GAACAAAAAAAAAAATAGTTATTTTCCCTCCCCTACCCTCCTATGAACCAAACATAATAAGTATTAAAATCCCTCCCCTC CCTTCCCCTCCCCTCCCCTCCCCTCCTTTGAACCAAACAGTATGTTAAAGGGTCACTTCTGTTTTCTAGGGGTGGTTTGT TTCATGGGTCTGTCCTTACATTTTCTCGGTTTTTTAGAAAGCCCTATTTTTCTGCTTCTTTGGAATGAGAGTTTTTTTCT TTCTTTTATTTGGGTTATTGATATTGAATGAGAGGGACTAAGTAAGAAGCCAAGGCCTCTCTTTTGTTATTGATATTGAA CGAGACTAAGTAAGAATCTAAGGCCTCCCTGGGCCATTGTTGCAGCTTTGTAGCCTTTTCTTTGCTTATGTTGGTATGCA TGATCAATTCAAGAATATTGATTCTCTTGTCATAGTTTCATTCTAATTTGATTTGTGTCACCCCCTTTTTCATTTGCTCC TTATTTTCCTGCAACACAGGTTCTGCAAGCCTTACCTTTTCAATTTCATTTCTAATTGGTGATTCCCTCATTCTTCAGCA GCTGAAATACATGGATACAGAGGAAGCCCCTAAAATCCCCAGAAGATTAACCAGGTCTTTGGCTTCATGTTCATCATCCA CTTCAAATATTGTACCTGCAGCAAAAGTAAATAACCTTGAACCTCTAACTATTGATGACCTTTTAGTTGGAGGAGGCCCC ATTAGCCTAGGTGATGTAATTTCTAGTTATCCTTGTAGAAGTAACCAGATTCTTGAGATTATGCGTCTTTTGGGTCCTTT GAATTCACCAATGCCTCCTTTGTTTGTGTATGGAAGTGCTTCTACTGGAAAAAGTAGTGTCATTCTTCAAGTATTCAGGC ATCTAAACAGACCCCTTATTTATTCTAGTTGTAGGACATGTTATAACCAGCGTATCTTGTTTGAGTCTATTCTAAATCAG TTGCTTCTCCATAGAAAAAATGCTGCCAATGGTTATTCTAATGTGAAGCGCTGTGAAAGACCATCTGATTTTGTCAATTT TCTCCGCGAAGCATTGACCAATGTTATAAACAATCTGAAAGAGAAGTCGATCTCAAATAAGACGAAACATGGAGGAATTG GGAATATGATCTACTTGGTATTTGATAATTTTCAGCTTGTTAGGGAGTGGGATAAGAACTCTACTATATTGCCCTTACTG TTTAATCTCTATGATCTGCTAAAGATGCCTGAGGTGGGTCTGATTTTTATCAGCAATACTTCCCCAGATACATTTTACTC TAACATGGGTTACGTGGATCCTATTCCCATTTACTTTCCTGATTACACAGAAGATGATATTCGTCAAATATTATTGAGAA ACCAAACGAACCAGAAGTTGTATTCCTCATTTCTAGAGTAAGACATTTTGATCCTTACATTAGTTTCCATTTTGAGCTTT ACATTATCTCATACGGTGAAGACTTTTGTTTCTTTTCATGCAGTGTAACTCTGAGGCCTTTCTGTAGAATTACTAGGCAG GTTGGTGAATTGACCACTGCTTTAAAGCCGCTATATGAAAAATATTGTGAACCTTTAAGTGACAGGGGAGTTGTTCCTAG TCAAGACATGATCCGAAGACTATTCAATCATATCAAGCCTCATATTGCCTCCTCTCTGAATGAGATATTTAAGGTTTCAT CTCCTCTTTCAAATGAAGTTGAGAATGGTAAAGAGACAAAGCGGAAAGGGAGTCCCAAGAGATTGGAGCAATCTGAAGAA ATTGGCAATCTTGATTTTCATATGTCTACTAGTGCTAAGTATCTCCTTATTTCAGCCTTTCTTGCCTCCAGAAACCCAGC TACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAGCGGAAGTAAGTATTGTGATTTA AAACTATTTTTTTTCTTTTTTTAAGATTTAGTTCTCAGGCTGTCGATGAAGGCTTTTCTGTATTTTATTTTTTATTTTTT ACTTACTTTCCTTGTCAATGTTGTCTTTGTGGGAATTATTTATTAAAGCTCTAACTATTTTCTGATTGGATTTGTTATTC TTTTGTGGTTGATGATAAAATGTTAGGTCTATTACATTTTCACATTTTTTATTCTTTTTTTATTGAGCATTGCCAGTTTC ATTTTGTTGTCTGAGTTATTCTTTTTCATGCTAGGCCCGCTGAGAAAGTGCTGAATAAGAAGGAAATTTTAGAAGAGGAA CTACTGATGAAAGGACCCGGAACTTTCCCATTAGAGAGGTTGTTAGCCATCTTTCTATGTCTTGTATCAGTTGCAGAAGA CCCGTCGGATGAAGAGGAACAAAGCAACTATGGATTAGGAGTTCCATGTGGCCATGATGAACTGATGTCTGACGTTCTTT TGCAACTTTCTAGCCTCTGCAATGCTAATTTTATATTTAAAGGAAGAAGCTGTCCAATAGAAGGCTCAATTCGGTATAGA TCAACTATATCTGAAGACTTGGCTTTGAAGGTAACATCTTTGTCTCACTTAATACTCGTACAAATATCTTCATTATATAT ATATATATATATATCAAACGATGAGTAATACTTACAATGTTGCTAAGCAGGTTGCAAGGAGCCTTAAGTTCCCATTATCT AAGTATTTGTATAGAAGATAGTTATATTTGACATGGACACTTCGCTAAGCTTGGTTGTCAAGGTTTTTGTGATATATTTG CTGAGAAAGTGAGAATGAATACATCCTCTACTGTGATCTACATTTATCAAAGTTGAAATGGCTGGAGTCTCCGATGAATG CAAACCAATGGTAGAATGGATAGTTTTGACCATGCAGTTCATTGGATGGATGGACTGAGTAGTGCTATTTAATGGACTTC TGAGTTGTTATGGTTTGGTTTATTGCTACTTTGTCTTCAATATTGCTCCGAATAGTTTTTCTAATTTTGTTGATTGTTAG TAAAGGTCCTGTAATCATGTTACTTGGAGCTGATATGAAATTGTAATATGGCAAAAAGTTGGGGTTAGTGCCAAATTTTG TTGTAAAAAGAATGCTCCTAGTTTGGTGGAAGTTTAATGGTGGGATTAGGAAGTTCTTGCTAATTCTTGCTGGTGTTATG TTCGCTAAGTTTTGATAGG
CDS sequence (LotjaGi1g1v0477400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACAGAGGAAGCCCCTAAAATCCCCAGAAGATTAACCAGGTCTTTGGCTTCATGTTCATCATCCACTTCAAATAT TGTACCTGCAGCAAAAGTAAATAACCTTGAACCTCTAACTATTGATGACCTTTTAGTTGGAGGAGGCCCCATTAGCCTAG GTGATGTAATTTCTAGTTATCCTTGTAGAAGTAACCAGATTCTTGAGATTATGCGTCTTTTGGGTCCTTTGAATTCACCA ATGCCTCCTTTGTTTGTGTATGGAAGTGCTTCTACTGGAAAAAGTAGTGTCATTCTTCAAGTATTCAGGCATCTAAACAG ACCCCTTATTTATTCTAGTTGTAGGACATGTTATAACCAGCGTATCTTGTTTGAGTCTATTCTAAATCAGTTGCTTCTCC ATAGAAAAAATGCTGCCAATGGTTATTCTAATGTGAAGCGCTGTGAAAGACCATCTGATTTTGTCAATTTTCTCCGCGAA GCATTGACCAATGTTATAAACAATCTGAAAGAGAAGTCGATCTCAAATAAGACGAAACATGGAGGAATTGGGAATATGAT CTACTTGGTATTTGATAATTTTCAGCTTGTTAGGGAGTGGGATAAGAACTCTACTATATTGCCCTTACTGTTTAATCTCT ATGATCTGCTAAAGATGCCTGAGGTGGGTCTGATTTTTATCAGCAATACTTCCCCAGATACATTTTACTCTAACATGGGT TACGTGGATCCTATTCCCATTTACTTTCCTGATTACACAGAAGATGATATTCGTCAAATATTATTGAGAAACCAAACGAA CCAGAAGTTGTATTCCTCATTTCTAGATGTAACTCTGAGGCCTTTCTGTAGAATTACTAGGCAGGTTGGTGAATTGACCA CTGCTTTAAAGCCGCTATATGAAAAATATTGTGAACCTTTAAGTGACAGGGGAGTTGTTCCTAGTCAAGACATGATCCGA AGACTATTCAATCATATCAAGCCTCATATTGCCTCCTCTCTGAATGAGATATTTAAGGTTTCATCTCCTCTTTCAAATGA AGTTGAGAATGGTAAAGAGACAAAGCGGAAAGGGAGTCCCAAGAGATTGGAGCAATCTGAAGAAATTGGCAATCTTGATT TTCATATGTCTACTAGTGCTAAGTATCTCCTTATTTCAGCCTTTCTTGCCTCCAGAAACCCAGCTACTCTTGATGCTTCA CTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAGCGGAAGCCCGCTGAGAAAGTGCTGAATAAGAAGGAAAT TTTAGAAGAGGAACTACTGATGAAAGGACCCGGAACTTTCCCATTAGAGAGGTTGTTAGCCATCTTTCTATGTCTTGTAT CAGTTGCAGAAGACCCGTCGGATGAAGAGGAACAAAGCAACTATGGATTAGGAGTTCCATGTGGCCATGATGAACTGATG TCTGACGTTCTTTTGCAACTTTCTAGCCTCTGCAATGCTAATTTTATATTTAAAGGAAGAAGCTGTCCAATAGAAGGCTC AATTCGGTATAGATCAACTATATCTGAAGACTTGGCTTTGAAGGTTGCAAGGAGCCTTAAGTTCCCATTATCTAAGTATT TGTATAGAAGATAG
Protein sequence (LotjaGi1g1v0477400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTEEAPKIPRRLTRSLASCSSSTSNIVPAAKVNNLEPLTIDDLLVGGGPISLGDVISSYPCRSNQILEIMRLLGPLNSP MPPLFVYGSASTGKSSVILQVFRHLNRPLIYSSCRTCYNQRILFESILNQLLLHRKNAANGYSNVKRCERPSDFVNFLRE ALTNVINNLKEKSISNKTKHGGIGNMIYLVFDNFQLVREWDKNSTILPLLFNLYDLLKMPEVGLIFISNTSPDTFYSNMG YVDPIPIYFPDYTEDDIRQILLRNQTNQKLYSSFLDVTLRPFCRITRQVGELTTALKPLYEKYCEPLSDRGVVPSQDMIR RLFNHIKPHIASSLNEIFKVSSPLSNEVENGKETKRKGSPKRLEQSEEIGNLDFHMSTSAKYLLISAFLASRNPATLDAS LFDSKGGSDNRKRKRKPAEKVLNKKEILEEELLMKGPGTFPLERLLAIFLCLVSVAEDPSDEEEQSNYGLGVPCGHDELM SDVLLQLSSLCNANFIFKGRSCPIEGSIRYRSTISEDLALKVARSLKFPLSKYLYRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| PANTHER | 53 | 535 | 483 | 1.8E-161 | ||
| SUPERFAMILY | 58 | 319 | 262 | 2.21E-16 | ||
| Gene3D | 60 | 237 | 178 | 5.2E-15 | – | |
| Pfam | 61 | 219 | 159 | 6.4E-12 | ||
| Pfam | 247 | 534 | 288 | 1.9E-58 | ||
| MobiDBLite | 346 | 369 | 24 | - | – | |
| MobiDBLite | 349 | 369 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Origin recognition complex | A multisubunit complex that is located at the replication origins of a chromosome. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi1g1v0477400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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